CX295003

Overview
NameCX295003
Unique NameCX295003
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2291 contig Ccv1_Contig2291:170..886. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295003 vs. ExPASy Swiss-Prot
Match: TREA_SALDC (Periplasmic trehalase OS=Salmonella dublin (strain CT_02021853) GN=treA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.151e-21
Identity = 60/175 (34.29%), Postives = 87/175 (49.71%), Query Frame = 1
Query:    7 AIDSVFWNEENGQWLDYWISNGTSSQECQRWKASNQNNNTFASNFVPIWIDLFNSDTCIVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLE 531
            AI+   WN + G + DY + N     +              A+   P++++    D     KV  + Q+  LL   G+AT+  +SG+QWD PNGWAPLQ +  EGL   G  +   +A ++  R++      Y     + EKY+V   G  GGGGEY  Q GFGW+NGV L  L+
Sbjct:  381 AIEMHLWNNKEGWYADYDLKNNKIRDQLT------------AAALFPLYVNAAAKDRAA--KVAAAAQAH-LLQPGGLATTSVKSGQQWDAPNGWAPLQWVAAEGLQNYGQDD---VAMEVTWRFLTNVQHTYDREKKLVEKYDVSSTGTGGGGGEYPLQDGFGWTNGVTLKMLD 537          
BLAST of CX295003 vs. ExPASy Swiss-Prot
Match: TREA_ECOLU (Periplasmic trehalase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=treA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.339e-21
Identity = 58/174 (33.33%), Postives = 85/174 (48.85%), Query Frame = 1
Query:   10 IDSVFWNEENGQWLDYWISNGTSSQECQRWKASNQNNNTFASNFVPIWIDLFNSDTCIVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLE 531
            I+   WN++ G + DY +            K+    N   A+   P++++    D         +   + LL   G+ T+  +SG+QWD PNGWAPLQ +  EGL   G +E   +A DI+  ++      Y     + EKY+V   G  GGGGEY  Q GFGW+NGV L  L+
Sbjct:  375 IEKYLWNDQQGWYADYDL------------KSHKVRNQLTAAALFPLYVNAAAKDRA---SKMATATKTHLLQPGGLNTTSVKSGQQWDAPNGWAPLQWVATEGLQNYGQNE---VAMDISWHFLTNVQHTYDREKKLVEKYDVSTTGTGGGGGEYPLQDGFGWTNGVTLKMLD 530          
BLAST of CX295003 vs. ExPASy Swiss-Prot
Match: TREA_ECO27 (Periplasmic trehalase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=treA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.339e-21
Identity = 58/174 (33.33%), Postives = 84/174 (48.28%), Query Frame = 1
Query:   10 IDSVFWNEENGQWLDYWISNGTSSQECQRWKASNQNNNTFASNFVPIWIDLFNSDTCIVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLE 531
            I+   WN++ G + DY +            K+    N   A+   P++++    D         +   + LL   G+ T+  +SG+QWD PNGWAPLQ +  EGL   G    K +A DI+  ++      Y     + EKY+V   G  GGGGEY  Q GFGW+NGV L  L+
Sbjct:  375 IEKYLWNDQQGWYADYDL------------KSHKVRNQLTAAALFPLYVNAAAKDRA---SKMATATKTHLLQPGGLNTTSVKSGQQWDAPNGWAPLQWVATEGLQNYGQ---KEVAMDISWHFLTNVQHTYDREKKLMEKYDVSTTGTGGGGGEYPLQDGFGWTNGVTLKMLD 530          
BLAST of CX295003 vs. ExPASy Swiss-Prot
Match: TREA_SHIFL (Periplasmic trehalase OS=Shigella flexneri GN=treA PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.220e-20
Identity = 58/174 (33.33%), Postives = 84/174 (48.28%), Query Frame = 1
Query:   10 IDSVFWNEENGQWLDYWISNGTSSQECQRWKASNQNNNTFASNFVPIWIDLFNSDTCIVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLE 531
            I+   WN++ G + DY +            K+    N   A+   P++++    D         +   + LL   G+ T+  +SG+QWD PNGWAPLQ +  EGL   G    K +A DI+  ++      Y     + EKY+V   G  GGGGEY  Q GFGW+NGV L  L+
Sbjct:  375 IEKYLWNDQQGWYADYDL------------KSHKVRNQLTAAALFPLYVNAAAKDRA---NKMATATKTHLLQPGGLNTTSVKSGQQWDAPNGWAPLQWVATEGLQNYGQ---KEVAMDISWHFLTNVQHTYDREKKLVEKYDVSTTGTGGGGGEYPLQDGFGWTNGVTLKMLD 530          
BLAST of CX295003 vs. ExPASy Swiss-Prot
Match: TREA_SHIF8 (Periplasmic trehalase OS=Shigella flexneri serotype 5b (strain 8401) GN=treA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.220e-20
Identity = 58/174 (33.33%), Postives = 84/174 (48.28%), Query Frame = 1
Query:   10 IDSVFWNEENGQWLDYWISNGTSSQECQRWKASNQNNNTFASNFVPIWIDLFNSDTCIVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLE 531
            I+   WN++ G + DY +            K+    N   A+   P++++    D         +   + LL   G+ T+  +SG+QWD PNGWAPLQ +  EGL   G    K +A DI+  ++      Y     + EKY+V   G  GGGGEY  Q GFGW+NGV L  L+
Sbjct:  375 IEKYLWNDQQGWYADYDL------------KSHKVRNQLTAAALFPLYVNAAAKDRA---NKMATATKTHLLQPGGLNTTSVKSGQQWDAPNGWAPLQWVATEGLQNYGQ---KEVAMDISWHFLTNVQHTYDREKKLVEKYDVSTTGTGGGGGEYPLQDGFGWTNGVTLKMLD 530          
BLAST of CX295003 vs. ExPASy Swiss-Prot
Match: TREA_SHIDS (Periplasmic trehalase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=treA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.220e-20
Identity = 58/174 (33.33%), Postives = 84/174 (48.28%), Query Frame = 1
Query:   10 IDSVFWNEENGQWLDYWISNGTSSQECQRWKASNQNNNTFASNFVPIWIDLFNSDTCIVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLE 531
            I+   WN++ G + DY +            K+    N   A+   P++++    D         +   + LL   G+ T+  +SG+QWD PNGWAPLQ +  EGL   G    K +A DI+  ++      Y     + EKY+V   G  GGGGEY  Q GFGW+NGV L  L+
Sbjct:  375 IEKYLWNDQQGWYADYDL------------KSHKVRNQLTAAALFPLYVNAAAKDRA---NKMATATKTHLLQPGGLNTTSVKSGQQWDAPNGWAPLQWVATEGLQNYGQ---KEVAMDISWHFLTNVQHTYDREKKLVEKYDVSTTGTGGGGGEYPLQDGFGWTNGVTLKMLD 530          
BLAST of CX295003 vs. ExPASy Swiss-Prot
Match: TREA_ECOUT (Periplasmic trehalase OS=Escherichia coli (strain UTI89 / UPEC) GN=treA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.220e-20
Identity = 58/174 (33.33%), Postives = 84/174 (48.28%), Query Frame = 1
Query:   10 IDSVFWNEENGQWLDYWISNGTSSQECQRWKASNQNNNTFASNFVPIWIDLFNSDTCIVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLE 531
            I+   WN++ G + DY +            K+    N   A+   P++++    D         +   + LL   G+ T+  +SG+QWD PNGWAPLQ +  EGL   G    K +A DI+  ++      Y     + EKY+V   G  GGGGEY  Q GFGW+NGV L  L+
Sbjct:  375 IEKYLWNDQQGWYADYDL------------KSHKVRNQLTAAALFPLYVNAAAKDRA---SKMATATKTHLLQPGGLNTTSVKSGQQWDAPNGWAPLQWVATEGLQNYGQ---KEVAMDISWHFLTNVQHTYDREKKLVEKYDVSTTGTGGGGGEYPLQDGFGWTNGVTLKMLD 530          
BLAST of CX295003 vs. ExPASy Swiss-Prot
Match: TREA_ECOSM (Periplasmic trehalase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=treA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.220e-20
Identity = 58/174 (33.33%), Postives = 84/174 (48.28%), Query Frame = 1
Query:   10 IDSVFWNEENGQWLDYWISNGTSSQECQRWKASNQNNNTFASNFVPIWIDLFNSDTCIVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLE 531
            I+   WN++ G + DY +            K+    N   A+   P++++    D         +   + LL   G+ T+  +SG+QWD PNGWAPLQ +  EGL   G    K +A DI+  ++      Y     + EKY+V   G  GGGGEY  Q GFGW+NGV L  L+
Sbjct:  375 IEKYLWNDQQGWYADYDL------------KSHKVRNQLTAAALFPLYVNAAAKDRA---SKMATATKTHLLQPGGLNTTSVKSGQQWDAPNGWAPLQWVATEGLQNYGQ---KEVAMDISWHFLTNVQNTYDREKKLVEKYDVSATGTGGGGGEYPLQDGFGWTNGVTLKMLD 530          
BLAST of CX295003 vs. ExPASy Swiss-Prot
Match: TREA_ECOSE (Periplasmic trehalase OS=Escherichia coli (strain SE11) GN=treA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.220e-20
Identity = 58/174 (33.33%), Postives = 84/174 (48.28%), Query Frame = 1
Query:   10 IDSVFWNEENGQWLDYWISNGTSSQECQRWKASNQNNNTFASNFVPIWIDLFNSDTCIVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLE 531
            I+   WN++ G + DY +            K+    N   A+   P++++    D         +   + LL   G+ T+  +SG+QWD PNGWAPLQ +  EGL   G    K +A DI+  ++      Y     + EKY+V   G  GGGGEY  Q GFGW+NGV L  L+
Sbjct:  375 IEKYMWNDQQGWYADYDL------------KSHKVRNQLTAAALFPLYVNAAAKDRA---NKMATATKTHLLQPGGLNTTSVKSGQQWDAPNGWAPLQWVATEGLQNYGQ---KEVAMDISWHFLTNVQHTYDREKKLVEKYDVSTTGTGGGGGEYPLQDGFGWTNGVTLKMLD 530          
BLAST of CX295003 vs. ExPASy Swiss-Prot
Match: TREA_ECOLI (Periplasmic trehalase OS=Escherichia coli (strain K12) GN=treA PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.220e-20
Identity = 58/174 (33.33%), Postives = 84/174 (48.28%), Query Frame = 1
Query:   10 IDSVFWNEENGQWLDYWISNGTSSQECQRWKASNQNNNTFASNFVPIWIDLFNSDTCIVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLE 531
            I+   WN++ G + DY +            K+    N   A+   P++++    D         +   + LL   G+ T+  +SG+QWD PNGWAPLQ +  EGL   G    K +A DI+  ++      Y     + EKY+V   G  GGGGEY  Q GFGW+NGV L  L+
Sbjct:  375 IEKYLWNDQQGWYADYDL------------KSHKVRNQLTAAALFPLYVNAAAKDRA---NKMATATKTHLLQPGGLNTTSVKSGQQWDAPNGWAPLQWVATEGLQNYGQ---KEVAMDISWHFLTNVQHTYDREKKLVEKYDVSTTGTGGGGGEYPLQDGFGWTNGVTLKMLD 530          
The following BLAST results are available for this feature:
BLAST of CX295003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
TREA_SALDC7.151e-2134.29Periplasmic trehalase OS=Salmonella dublin (strain... [more]
TREA_ECOLU9.339e-2133.33Periplasmic trehalase OS=Escherichia coli O17:K52:... [more]
TREA_ECO279.339e-2133.33Periplasmic trehalase OS=Escherichia coli O127:H6 ... [more]
TREA_SHIFL1.220e-2033.33Periplasmic trehalase OS=Shigella flexneri GN=treA... [more]
TREA_SHIF81.220e-2033.33Periplasmic trehalase OS=Shigella flexneri serotyp... [more]
TREA_SHIDS1.220e-2033.33Periplasmic trehalase OS=Shigella dysenteriae sero... [more]
TREA_ECOUT1.220e-2033.33Periplasmic trehalase OS=Escherichia coli (strain ... [more]
TREA_ECOSM1.220e-2033.33Periplasmic trehalase OS=Escherichia coli (strain ... [more]
TREA_ECOSE1.220e-2033.33Periplasmic trehalase OS=Escherichia coli (strain ... [more]
TREA_ECOLI1.220e-2033.33Periplasmic trehalase OS=Escherichia coli (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC05065E08SK DroRLeaf1 Citrus clementina cDNA clone C05065E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295003 ID=CX295003; Name=CX295003; organism=Citrus clementina; type=EST; length=717bp
AAAGCGGCAATAGACTCTGTTTTCTGGAATGAAGAAAATGGGCAATGGCT
GGATTACTGGATAAGTAATGGAACTAGTAGCCAGGAATGCCAAAGATGGA
AAGCTTCAAACCAAAATAATAATACATTTGCCTCAAACTTTGTACCCATA
TGGATTGATTTATTCAACTCTGATACTTGTATAGTGGAGAAAGTCCGAAA
AAGCTTTCAAAGTTCAGGCTTACTCGGTGCTGCTGGAATTGCAACTTCGT
TGACAAGATCAGGTGAACAATGGGACTTTCCTAACGGCTGGGCGCCACTT
CAACACATGATAGTAGAAGGTTTGGGTAAGTCAGGATCACATGAAGCAAA
GTCGATGGCACAAGACATTGCTATGAGGTGGATCAATACCAATTATGTTG
CATACAAAGAAACTGGTGCTATGCATGAAAAATATAATGTAGAAAAATGT
GGAGATATTGGAGGTGGTGGTGAATACATACCCCAGACTGGTTTTGGCTG
GTCAAATGGAGTCGTGTTGGCGTTCTTGGAGGAGTTTGGGTGGCCAGCAG
ATCTGAAGATAGGTTGCAATGGAGTTATGCTCTGAAGAGATGAGCTTTGA
CTTGGTTTATAATTACCGACCTAATTATCCTGGATTCTCTCCCTTCTTTT
TCTTGTCTTGTCAATTCTATTGAACGTGGGAACTTGATATATTATGTACA
TTCATATTTTGCATTTT
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