CX295003

Overview
NameCX295003
Unique NameCX295003
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2291 contig Ccv1_Contig2291:170..886. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295003 vs. ExPASy Swiss-Prot
Match: TREA_XANC8 (Periplasmic trehalase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=treA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 59/176 (33.52%), Postives = 86/176 (48.86%), Query Frame = 1
Query:    1 KAAIDSVFWNEENGQWLDYWISNGTSSQECQRWKASNQNNNTFASNFVPIWIDLFNSDTCIVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVVLAFL 528
            K AID+  WN   G + DY             W+    +N   A+   P++  L + D     K   +   + LL   G+AT+  ++G+QWD PNGWAPLQ + V+GL + G      +A+ I  R++      +     + EKY ++     GGGGEY  Q GFGW+NGV L  L
Sbjct:  388 KQAIDAHLWNAA-GYYADY------------DWQTRTLSNQVTAAALYPLFAGLASDDHA---KRTATSVRARLLRPGGLATTALKTGQQWDEPNGWAPLQWVAVDGLRRYGE---DGLARTIGERFLTQVQALFAREHKLVEKYGLDADAAGGGGGEYALQDGFGWTNGVTLMLL 544          
BLAST of CX295003 vs. ExPASy Swiss-Prot
Match: TREF_SHISS (Cytoplasmic trehalase OS=Shigella sonnei (strain Ss046) GN=treF PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.125e-19
Identity = 62/181 (34.25%), Postives = 91/181 (50.28%), Query Frame = 1
Query:    7 AIDSVFWNEENGQWLDYWISNGTSSQECQRWKASNQNNNTFASNFVPIWIDLFNSDTCIVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNV-EKCGDIGGGGEYIPQTGFGWSNGVVLAFLEEFGWP 546
            A++   W++ENG + DY             W+   Q     A+  VP+++ + N +    +++  + +S  LL   GI  S   +GEQWD PNGWAPLQ M ++G    G      +  +IA  W+ T    Y E   M EKY++ +     GGGGEY  Q GFGW+NGVV   +  +G P
Sbjct:  388 AVNRYLWDDENGIYRDY------------DWRRE-QLALFSAAAIVPLYVGMANHEQA--DRLANAVRSR-LLTPGGILASEYETGEQWDKPNGWAPLQWMAIQGFKMYGD---DLLGDEIARSWLKTVNQFYLEQHKMIEKYHIADGVPREGGGGEYPLQDGFGWTNGVVRRLIGLYGEP 549          
BLAST of CX295003 vs. ExPASy Swiss-Prot
Match: TREF_SHIFL (Cytoplasmic trehalase OS=Shigella flexneri GN=treF PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.125e-19
Identity = 62/181 (34.25%), Postives = 91/181 (50.28%), Query Frame = 1
Query:    7 AIDSVFWNEENGQWLDYWISNGTSSQECQRWKASNQNNNTFASNFVPIWIDLFNSDTCIVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNV-EKCGDIGGGGEYIPQTGFGWSNGVVLAFLEEFGWP 546
            A++   W++ENG + DY             W+   Q     A+  VP+++ + N +    +++  + +S  LL   GI  S   +GEQWD PNGWAPLQ M ++G    G      +  +IA  W+ T    Y E   M EKY++ +     GGGGEY  Q GFGW+NGVV   +  +G P
Sbjct:  388 AVNRYLWDDENGIYRDY------------DWRRE-QLALFSAAAIVPLYVGMANHEQA--DRLANAVRSR-LLTPGGILASEYETGEQWDKPNGWAPLQWMAIQGFKMYGD---DLLGDEIARSWLKTVNQFYLEQHKMIEKYHIADGVPREGGGGEYPLQDGFGWTNGVVRRLIGLYGEP 549          
BLAST of CX295003 vs. ExPASy Swiss-Prot
Match: TREF_SHIF8 (Cytoplasmic trehalase OS=Shigella flexneri serotype 5b (strain 8401) GN=treF PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.125e-19
Identity = 62/181 (34.25%), Postives = 91/181 (50.28%), Query Frame = 1
Query:    7 AIDSVFWNEENGQWLDYWISNGTSSQECQRWKASNQNNNTFASNFVPIWIDLFNSDTCIVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNV-EKCGDIGGGGEYIPQTGFGWSNGVVLAFLEEFGWP 546
            A++   W++ENG + DY             W+   Q     A+  VP+++ + N +    +++  + +S  LL   GI  S   +GEQWD PNGWAPLQ M ++G    G      +  +IA  W+ T    Y E   M EKY++ +     GGGGEY  Q GFGW+NGVV   +  +G P
Sbjct:  388 AVNRYLWDDENGIYRDY------------DWRRE-QLALFSAAAIVPLYVGMANHEQA--DRLANAVRSR-LLTPGGILASEYETGEQWDKPNGWAPLQWMAIQGFKMYGD---DLLGDEIARSWLKTVNQFYLEQHKMIEKYHIADGVPREGGGGEYPLQDGFGWTNGVVRRLIGLYGEP 549          
BLAST of CX295003 vs. ExPASy Swiss-Prot
Match: TREF_ECOSE (Cytoplasmic trehalase OS=Escherichia coli (strain SE11) GN=treF PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.125e-19
Identity = 62/181 (34.25%), Postives = 91/181 (50.28%), Query Frame = 1
Query:    7 AIDSVFWNEENGQWLDYWISNGTSSQECQRWKASNQNNNTFASNFVPIWIDLFNSDTCIVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNV-EKCGDIGGGGEYIPQTGFGWSNGVVLAFLEEFGWP 546
            A++   W++ENG + DY             W+   Q     A+  VP+++ + N +    +++  + +S  LL   GI  S   +GEQWD PNGWAPLQ M ++G    G      +  +IA  W+ T    Y E   M EKY++ +     GGGGEY  Q GFGW+NGVV   +  +G P
Sbjct:  388 AVNRYLWDDENGIYRDY------------DWRRE-QLALFSAAAIVPLYVGMANHEQA--DRLANAVRSR-LLTPGGILASEYETGEQWDKPNGWAPLQWMAIQGFKMYGD---DLLGDEIARSWLKTVNQFYLEQHKMIEKYHIADGVPREGGGGEYPLQDGFGWTNGVVRRLIGLYGEP 549          
BLAST of CX295003 vs. ExPASy Swiss-Prot
Match: TREF_ECOLC (Cytoplasmic trehalase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=treF PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.125e-19
Identity = 62/181 (34.25%), Postives = 91/181 (50.28%), Query Frame = 1
Query:    7 AIDSVFWNEENGQWLDYWISNGTSSQECQRWKASNQNNNTFASNFVPIWIDLFNSDTCIVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNV-EKCGDIGGGGEYIPQTGFGWSNGVVLAFLEEFGWP 546
            A++   W++ENG + DY             W+   Q     A+  VP+++ + N +    +++  + +S  LL   GI  S   +GEQWD PNGWAPLQ M ++G    G      +  +IA  W+ T    Y E   M EKY++ +     GGGGEY  Q GFGW+NGVV   +  +G P
Sbjct:  388 AVNRYLWDDENGIYRDY------------DWRRE-QLALFSAAAIVPLYVGMANHEQA--DRLANAVRSR-LLTPGGILASEYETGEQWDKPNGWAPLQWMAIQGFKMYGD---DLLGDEIARSWLKTVNQFYLEQHKMIEKYHIADGVPREGGGGEYPLQDGFGWTNGVVRRLIGLYGEP 549          
BLAST of CX295003 vs. ExPASy Swiss-Prot
Match: TREF_ECOHS (Cytoplasmic trehalase OS=Escherichia coli O9:H4 (strain HS) GN=treF PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.125e-19
Identity = 62/181 (34.25%), Postives = 91/181 (50.28%), Query Frame = 1
Query:    7 AIDSVFWNEENGQWLDYWISNGTSSQECQRWKASNQNNNTFASNFVPIWIDLFNSDTCIVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNV-EKCGDIGGGGEYIPQTGFGWSNGVVLAFLEEFGWP 546
            A++   W++ENG + DY             W+   Q     A+  VP+++ + N +    +++  + +S  LL   GI  S   +GEQWD PNGWAPLQ M ++G    G      +  +IA  W+ T    Y E   M EKY++ +     GGGGEY  Q GFGW+NGVV   +  +G P
Sbjct:  388 AVNRYLWDDENGIYRDY------------DWRRE-QLALFSAAAIVPLYVGMANHEQA--DRLANAVRSR-LLTPGGILASEYETGEQWDKPNGWAPLQWMAIQGFKMYGD---DLLGDEIARSWLKTVNQFYLEQHKMIEKYHIADGVPREGGGGEYPLQDGFGWTNGVVRRLIGLYGEP 549          
BLAST of CX295003 vs. ExPASy Swiss-Prot
Match: TREF_ECO8A (Cytoplasmic trehalase OS=Escherichia coli O8 (strain IAI1) GN=treF PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.125e-19
Identity = 62/181 (34.25%), Postives = 91/181 (50.28%), Query Frame = 1
Query:    7 AIDSVFWNEENGQWLDYWISNGTSSQECQRWKASNQNNNTFASNFVPIWIDLFNSDTCIVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNV-EKCGDIGGGGEYIPQTGFGWSNGVVLAFLEEFGWP 546
            A++   W++ENG + DY             W+   Q     A+  VP+++ + N +    +++  + +S  LL   GI  S   +GEQWD PNGWAPLQ M ++G    G      +  +IA  W+ T    Y E   M EKY++ +     GGGGEY  Q GFGW+NGVV   +  +G P
Sbjct:  388 AVNRYLWDDENGIYRDY------------DWRRE-QLALFSAAAIVPLYVGMANHEQA--DRLANAVRSR-LLTPGGILASEYETGEQWDKPNGWAPLQWMAIQGFKMYGD---DLLGDEIARSWLKTVNQFYLEQHKMIEKYHIADGVPREGGGGEYPLQDGFGWTNGVVRRLIGLYGEP 549          
BLAST of CX295003 vs. ExPASy Swiss-Prot
Match: TREF_ECO55 (Cytoplasmic trehalase OS=Escherichia coli (strain 55989 / EAEC) GN=treF PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.125e-19
Identity = 62/181 (34.25%), Postives = 91/181 (50.28%), Query Frame = 1
Query:    7 AIDSVFWNEENGQWLDYWISNGTSSQECQRWKASNQNNNTFASNFVPIWIDLFNSDTCIVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNV-EKCGDIGGGGEYIPQTGFGWSNGVVLAFLEEFGWP 546
            A++   W++ENG + DY             W+   Q     A+  VP+++ + N +    +++  + +S  LL   GI  S   +GEQWD PNGWAPLQ M ++G    G      +  +IA  W+ T    Y E   M EKY++ +     GGGGEY  Q GFGW+NGVV   +  +G P
Sbjct:  388 AVNRYLWDDENGIYRDY------------DWRRE-QLALFSAAAIVPLYVGMANHEQA--DRLANAVRSR-LLTPGGILASEYETGEQWDKPNGWAPLQWMAIQGFKMYGD---DLLGDEIARSWLKTVNQFYLEQHKMIEKYHIADGVPREGGGGEYPLQDGFGWTNGVVRRLIGLYGEP 549          
BLAST of CX295003 vs. ExPASy Swiss-Prot
Match: TREF_ECO24 (Cytoplasmic trehalase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=treF PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.125e-19
Identity = 62/181 (34.25%), Postives = 91/181 (50.28%), Query Frame = 1
Query:    7 AIDSVFWNEENGQWLDYWISNGTSSQECQRWKASNQNNNTFASNFVPIWIDLFNSDTCIVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNV-EKCGDIGGGGEYIPQTGFGWSNGVVLAFLEEFGWP 546
            A++   W++ENG + DY             W+   Q     A+  VP+++ + N +    +++  + +S  LL   GI  S   +GEQWD PNGWAPLQ M ++G    G      +  +IA  W+ T    Y E   M EKY++ +     GGGGEY  Q GFGW+NGVV   +  +G P
Sbjct:  388 AVNRYLWDDENGIYRDY------------DWRRE-QLALFSAAAIVPLYVGMANHEQA--DRLANAVRSR-LLTPGGILASEYETGEQWDKPNGWAPLQWMAIQGFKMYGD---DLLGDEIARSWLKTVNQFYLEQHKMIEKYHIADGVPREGGGGEYPLQDGFGWTNGVVRRLIGLYGEP 549          
The following BLAST results are available for this feature:
BLAST of CX295003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
TREA_XANC83.924e-1933.52Periplasmic trehalase OS=Xanthomonas campestris pv... [more]
TREF_SHISS5.125e-1934.25Cytoplasmic trehalase OS=Shigella sonnei (strain S... [more]
TREF_SHIFL5.125e-1934.25Cytoplasmic trehalase OS=Shigella flexneri GN=treF... [more]
TREF_SHIF85.125e-1934.25Cytoplasmic trehalase OS=Shigella flexneri serotyp... [more]
TREF_ECOSE5.125e-1934.25Cytoplasmic trehalase OS=Escherichia coli (strain ... [more]
TREF_ECOLC5.125e-1934.25Cytoplasmic trehalase OS=Escherichia coli (strain ... [more]
TREF_ECOHS5.125e-1934.25Cytoplasmic trehalase OS=Escherichia coli O9:H4 (s... [more]
TREF_ECO8A5.125e-1934.25Cytoplasmic trehalase OS=Escherichia coli O8 (stra... [more]
TREF_ECO555.125e-1934.25Cytoplasmic trehalase OS=Escherichia coli (strain ... [more]
TREF_ECO245.125e-1934.25Cytoplasmic trehalase OS=Escherichia coli O139:H28... [more]

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Properties
Property NameValue
Genbank descriptionC05065E08SK DroRLeaf1 Citrus clementina cDNA clone C05065E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295003 ID=CX295003; Name=CX295003; organism=Citrus clementina; type=EST; length=717bp
AAAGCGGCAATAGACTCTGTTTTCTGGAATGAAGAAAATGGGCAATGGCT
GGATTACTGGATAAGTAATGGAACTAGTAGCCAGGAATGCCAAAGATGGA
AAGCTTCAAACCAAAATAATAATACATTTGCCTCAAACTTTGTACCCATA
TGGATTGATTTATTCAACTCTGATACTTGTATAGTGGAGAAAGTCCGAAA
AAGCTTTCAAAGTTCAGGCTTACTCGGTGCTGCTGGAATTGCAACTTCGT
TGACAAGATCAGGTGAACAATGGGACTTTCCTAACGGCTGGGCGCCACTT
CAACACATGATAGTAGAAGGTTTGGGTAAGTCAGGATCACATGAAGCAAA
GTCGATGGCACAAGACATTGCTATGAGGTGGATCAATACCAATTATGTTG
CATACAAAGAAACTGGTGCTATGCATGAAAAATATAATGTAGAAAAATGT
GGAGATATTGGAGGTGGTGGTGAATACATACCCCAGACTGGTTTTGGCTG
GTCAAATGGAGTCGTGTTGGCGTTCTTGGAGGAGTTTGGGTGGCCAGCAG
ATCTGAAGATAGGTTGCAATGGAGTTATGCTCTGAAGAGATGAGCTTTGA
CTTGGTTTATAATTACCGACCTAATTATCCTGGATTCTCTCCCTTCTTTT
TCTTGTCTTGTCAATTCTATTGAACGTGGGAACTTGATATATTATGTACA
TTCATATTTTGCATTTT
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