CX295003

Overview
NameCX295003
Unique NameCX295003
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2291 contig Ccv1_Contig2291:170..886. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295003 vs. ExPASy Swiss-Prot
Match: TREA_RALSO (Periplasmic trehalase OS=Ralstonia solanacearum GN=treA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16
Identity = 49/150 (32.67%), Postives = 78/150 (52.00%), Query Frame = 1
Query:   97 WKASNQNNNTFASNFVPIWIDLFNSDTCIVEKVRKSFQSS--GLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLEEFG 540
            WK     +N  A+   P+++ +         + R++ + +   LL   G++T+   + +QWD PNGWAPLQ + ++    S  +    +AQ I  R++ +    Y     + EKY V+  G  GGGGEY  Q GFGW+NGV L  L+ +G
Sbjct:  407 WKLGKVRDNLSAAATYPLFVQMAPWG-----RARQTLRQTQTALLQVGGLSTTTLHTQQQWDAPNGWAPLQWIALQA---SQHYGQALLAQTIGERFLGSVERLYAAEQKLVEKYIVDGSGTGGGGGEYPLQDGFGWTNGVTLRLLDAYG 548          
BLAST of CX295003 vs. ExPASy Swiss-Prot
Match: TREA_CANAL (Neutral trehalase OS=Candida albicans GN=NTC1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.011e-11
Identity = 55/188 (29.26%), Postives = 84/188 (44.68%), Query Frame = 1
Query:    1 KAAIDSVFWNEENGQWLDYWISNGTSSQECQRWKASNQNNNTFASNFVPIWIDLFNSDTC--IVEKVRKSFQSSGLLGAAGIAT----SLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHEAKSMAQDIAMRWI---NTNYVAYKETGAMHEKYNVEK----------CGDIGGGGEYIPQTGFGWSN 507
            K  +D   WNE++G + DY +            K   Q N   A+ F P++  L +S+    ++++    F+  G L A  + +     LTR   QWD+P GWAP Q +   GL   G      +A+ +A RW+     ++V Y   G + EKYNV K           G+ G   + +   GFGW N
Sbjct:  697 KLNVDKYLWNEQDGIYYDYNV------------KLQQQTNYESATTFWPLYAKLASSNQAAKLIDQSLHKFEEHGGLVAGTLKSRGEVGLTRPSRQWDYPFGWAPQQILAWIGLVNYG---YDGIARRLAYRWLFMMTKSFVDY--NGVIVEKYNVTKGAVPHRVDAEYGNQGLDFKGVATEGFGWVN 867          
The following BLAST results are available for this feature:
BLAST of CX295003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
TREA_RALSO6.926e-1632.67Periplasmic trehalase OS=Ralstonia solanacearum GN... [more]
TREA_CANAL3.011e-1129.26Neutral trehalase OS=Candida albicans GN=NTC1 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionC05065E08SK DroRLeaf1 Citrus clementina cDNA clone C05065E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295003 ID=CX295003; Name=CX295003; organism=Citrus clementina; type=EST; length=717bp
AAAGCGGCAATAGACTCTGTTTTCTGGAATGAAGAAAATGGGCAATGGCT
GGATTACTGGATAAGTAATGGAACTAGTAGCCAGGAATGCCAAAGATGGA
AAGCTTCAAACCAAAATAATAATACATTTGCCTCAAACTTTGTACCCATA
TGGATTGATTTATTCAACTCTGATACTTGTATAGTGGAGAAAGTCCGAAA
AAGCTTTCAAAGTTCAGGCTTACTCGGTGCTGCTGGAATTGCAACTTCGT
TGACAAGATCAGGTGAACAATGGGACTTTCCTAACGGCTGGGCGCCACTT
CAACACATGATAGTAGAAGGTTTGGGTAAGTCAGGATCACATGAAGCAAA
GTCGATGGCACAAGACATTGCTATGAGGTGGATCAATACCAATTATGTTG
CATACAAAGAAACTGGTGCTATGCATGAAAAATATAATGTAGAAAAATGT
GGAGATATTGGAGGTGGTGGTGAATACATACCCCAGACTGGTTTTGGCTG
GTCAAATGGAGTCGTGTTGGCGTTCTTGGAGGAGTTTGGGTGGCCAGCAG
ATCTGAAGATAGGTTGCAATGGAGTTATGCTCTGAAGAGATGAGCTTTGA
CTTGGTTTATAATTACCGACCTAATTATCCTGGATTCTCTCCCTTCTTTT
TCTTGTCTTGTCAATTCTATTGAACGTGGGAACTTGATATATTATGTACA
TTCATATTTTGCATTTT
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