CX295011 | Citrus Genome Database

Overview


Name	CX295011
Unique Name	CX295011
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	682

Libraries


Library Name	Type
DroRLeaf1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX295011 vs. ExPASy Swiss-Prot
Match: MAO1_SHIFL (NAD-dependent malic enzyme OS=Shigella flexneri GN=sfcA PE=3 SV=4)

HSP 1 Score: 90.8929 bits (224), Expect = 6.777e-18
Identity = 42/113 (37.17%), Postives = 75/113 (66.37%), Query Frame = 2

Query:  344 SGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYIS 682
            +G  LL  P  NKG AF+ +ER    L GLLP  V + + Q ++     + ++  + K++ +  +++ NE LFY+L+ ++++E++PV+YTPTVG AC+++  I+RR +G++IS
Sbjct:   16 AGPVLLEFPLLNKGSAFSMEERRNFNLLGLLPEVVETIEEQAERAWIQYQGFKTEIDKHIYLRNIQDTNETLFYRLVNNHLDEMMPVIYTPTVGAACERFSEIYRRSRGVFIS 128

[Close]

BLAST of CX295011 vs. ExPASy Swiss-Prot
Match: MAO1_SHIF8 (NAD-dependent malic enzyme OS=Shigella flexneri serotype 5b (strain 8401) GN=sfcA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.777e-18
Identity = 42/113 (37.17%), Postives = 75/113 (66.37%), Query Frame = 2

Query:  344 SGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYIS 682
            +G  LL  P  NKG AF+ +ER    L GLLP  V + + Q ++     + ++  + K++ +  +++ NE LFY+L+ ++++E++PV+YTPTVG AC+++  I+RR +G++IS
Sbjct:   16 AGPVLLEFPLLNKGSAFSMEERRNFNLLGLLPEVVETIEEQAERAWIQYQGFKTEIDKHIYLRNIQDTNETLFYRLVNNHLDEMMPVIYTPTVGAACERFSEIYRRSRGVFIS 128

[Close]

BLAST of CX295011 vs. ExPASy Swiss-Prot
Match: MAO1_SHIBS (NAD-dependent malic enzyme OS=Shigella boydii serotype 4 (strain Sb227) GN=sfcA PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 6.777e-18
Identity = 42/113 (37.17%), Postives = 75/113 (66.37%), Query Frame = 2

Query:  344 SGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYIS 682
            +G  LL  P  NKG AF+ +ER    L GLLP  V + + Q ++     + ++  + K++ +  +++ NE LFY+L+ ++++E++PV+YTPTVG AC+++  I+RR +G++IS
Sbjct:   16 AGPVLLEFPLLNKGSAFSMEERRNFNLLGLLPEVVETIEEQAERAWIQYQGFKTEIDKHIYLRNIQDTNETLFYRLVNNHLDEMMPVIYTPTVGAACERFSEIYRRSRGVFIS 128

[Close]

BLAST of CX295011 vs. ExPASy Swiss-Prot
Match: MAO1_SHIB3 (NAD-dependent malic enzyme OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=sfcA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.777e-18
Identity = 42/113 (37.17%), Postives = 75/113 (66.37%), Query Frame = 2

Query:  344 SGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYIS 682
            +G  LL  P  NKG AF+ +ER    L GLLP  V + + Q ++     + ++  + K++ +  +++ NE LFY+L+ ++++E++PV+YTPTVG AC+++  I+RR +G++IS
Sbjct:   16 AGPVLLEFPLLNKGSAFSMEERRNFNLLGLLPEVVETIEEQAERAWIQYQGFKTEIDKHIYLRNIQDTNETLFYRLVNNHLDEMMPVIYTPTVGAACERFSEIYRRSRGVFIS 128

[Close]

BLAST of CX295011 vs. ExPASy Swiss-Prot
Match: MAO1_SHEPA (NAD-dependent malic enzyme OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=sfcA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.777e-18
Identity = 40/113 (35.40%), Postives = 73/113 (64.60%), Query Frame = 2

Query:  344 SGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYIS 682
            +G  +L  P  NKG AFT++ER    L GLLP  + + + Q  +  +  + +   L K++ +  +++ NE L+Y+L+ +++ E++P++YTPTVG AC+++   +RR +GL+IS
Sbjct:   13 AGPAILEAPLINKGSAFTDEERIFFNLEGLLPHVIETIEEQASRAYDQYKNFSNDLDKHIYLRNIQDTNETLYYRLVQNHITEMMPIIYTPTVGMACERFSKDYRRNRGLFIS 125

[Close]

BLAST of CX295011 vs. ExPASy Swiss-Prot
Match: MAO1_SHELP (NAD-dependent malic enzyme OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=sfcA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.777e-18
Identity = 41/113 (36.28%), Postives = 73/113 (64.60%), Query Frame = 2

Query:  344 SGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYIS 682
            +G  +L  P  NKG AFTE+ER    L GLLP  + + + Q  +  +  + +   L +++ +  +++ NE L+Y+LL +++ E++P++YTPTVG AC+++   +RR +GL+IS
Sbjct:   13 AGPAILEAPLINKGSAFTEEERIFFNLEGLLPHVIETIEEQASRAYDQYKNFGNDLDRHIYLRNIQDTNETLYYRLLQNHITEMMPIIYTPTVGLACERFSKNYRRNRGLFIS 125

[Close]

BLAST of CX295011 vs. ExPASy Swiss-Prot
Match: MAO1_ESCF3 (NAD-dependent malic enzyme OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=sfcA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.777e-18
Identity = 42/113 (37.17%), Postives = 75/113 (66.37%), Query Frame = 2

Query:  344 SGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYIS 682
            +G  LL  P  NKG AF+ +ER    L GLLP  V + + Q ++     + ++  + K++ +  +++ NE LFY+L+ ++++E++PV+YTPTVG AC+++  I+RR +G++IS
Sbjct:   16 AGPVLLEFPLLNKGSAFSMEERRNFNLLGLLPEVVETIEEQAERAWIQYQGFKTEIDKHIYLRNIQDTNETLFYRLVNNHLDEMMPVIYTPTVGAACERFSEIYRRSRGVFIS 128

[Close]

BLAST of CX295011 vs. ExPASy Swiss-Prot
Match: MAO1_ECOUT (NAD-dependent malic enzyme OS=Escherichia coli (strain UTI89 / UPEC) GN=sfcA PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 6.777e-18
Identity = 42/113 (37.17%), Postives = 75/113 (66.37%), Query Frame = 2

Query:  344 SGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYIS 682
            +G  LL  P  NKG AF+ +ER    L GLLP  V + + Q ++     + ++  + K++ +  +++ NE LFY+L+ ++++E++PV+YTPTVG AC+++  I+RR +G++IS
Sbjct:   16 AGPVLLEFPLLNKGSAFSMEERRNFNLLGLLPEVVETIEEQAERAWIQYQGFKTEIDKHIYLRNIQDTNETLFYRLVNNHLDEMMPVIYTPTVGAACERFSEIYRRSRGVFIS 128

[Close]

BLAST of CX295011 vs. ExPASy Swiss-Prot
Match: MAO1_ECOSM (NAD-dependent malic enzyme OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=sfcA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.777e-18
Identity = 42/113 (37.17%), Postives = 75/113 (66.37%), Query Frame = 2

Query:  344 SGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYIS 682
            +G  LL  P  NKG AF+ +ER    L GLLP  V + + Q ++     + ++  + K++ +  +++ NE LFY+L+ ++++E++PV+YTPTVG AC+++  I+RR +G++IS
Sbjct:   16 AGPVLLEFPLLNKGSAFSMEERRNFNLLGLLPEVVETIEEQAERAWIQYQGFKTEIDKHIYLRNIQDTNETLFYRLVNNHLDEMMPVIYTPTVGAACERFSEIYRRSRGVFIS 128

[Close]

BLAST of CX295011 vs. ExPASy Swiss-Prot
Match: MAO1_ECOLU (NAD-dependent malic enzyme OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=sfcA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.777e-18
Identity = 42/113 (37.17%), Postives = 75/113 (66.37%), Query Frame = 2

Query:  344 SGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYIS 682
            +G  LL  P  NKG AF+ +ER    L GLLP  V + + Q ++     + ++  + K++ +  +++ NE LFY+L+ ++++E++PV+YTPTVG AC+++  I+RR +G++IS
Sbjct:   16 AGPVLLEFPLLNKGSAFSMEERRNFNLLGLLPEVVETIEEQAERAWIQYQGFKTEIDKHIYLRNIQDTNETLFYRLVNNHLDEMMPVIYTPTVGAACERFSEIYRRSRGVFIS 128

The following BLAST results are available for this feature:

BLAST of CX295011 vs. ExPASy Swiss-Prot

BLAST of CX295011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140


Match Name	E-value	Identity	Description
MAO1_SHIFL	6.777e-18	37.17	NAD-dependent malic enzyme OS=Shigella flexneri GN...	[more]
MAO1_SHIF8	6.777e-18	37.17	NAD-dependent malic enzyme OS=Shigella flexneri se...	[more]
MAO1_SHIBS	6.777e-18	37.17	NAD-dependent malic enzyme OS=Shigella boydii sero...	[more]
MAO1_SHIB3	6.777e-18	37.17	NAD-dependent malic enzyme OS=Shigella boydii sero...	[more]
MAO1_SHEPA	6.777e-18	35.40	NAD-dependent malic enzyme OS=Shewanella pealeana ...	[more]
MAO1_SHELP	6.777e-18	36.28	NAD-dependent malic enzyme OS=Shewanella loihica (...	[more]
MAO1_ESCF3	6.777e-18	37.17	NAD-dependent malic enzyme OS=Escherichia ferguson...	[more]
MAO1_ECOUT	6.777e-18	37.17	NAD-dependent malic enzyme OS=Escherichia coli (st...	[more]
MAO1_ECOSM	6.777e-18	37.17	NAD-dependent malic enzyme OS=Escherichia coli (st...	[more]
MAO1_ECOLU	6.777e-18	37.17	NAD-dependent malic enzyme OS=Escherichia coli O17...	[more]

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Properties


Property Name	Value
Genbank description	C05065F04SK DroRLeaf1 Citrus clementina cDNA clone C05065F04, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX295011 ID=CX295011; Name=CX295011; organism=Citrus clementina; type=EST; length=682bp
CAGTACAGCGCGCACTCGGAACCTCCACTTGAATCAATCAGTCAACTGAC
AACGACTTAGATTTTTTATATCTACACTGTACAGTTCGGACTCGTTTCTA
TTCTATGAGGCATTTAGCACGGCGAAAGTCAAGGGAGTGAGTGTTTGTTT
GTTTTCGTTTTTGTGAAAAGCAGAAAAAGTAAAAAGAGTGAGAATGGAGA
GCACCATGAAGGAGATGAGAGACGGAGCTTCGGTTCTCGACTTCGACTCG
AAATCCACCGTCGAAGGCGGCGTTGAAGACGTCTACGGTGAGGATCGTGC
CACCGAGGACCAGCTCGTCACTCCCTGGACCATCTCTGTTGCCAGCGGGT
ACTGTTTGTTGAGGGATCCACGCCATAACAAAGGGCTTGCTTTCACTGAG
AAAGAGAGGGATGCCCACTACTTGCGCGGCCTTTTGCCTCCAGCTGTTAT
AAGTCAACAACTTCAGGAGAAGAAATTGATGAACAGCATCAGACAATATG
AAGTTCCGCTGCAAAAATATGTGGCCATGATGGAACTTGAGGAGAGAAAT
GAAAGACTGTTCTATAAGCTACTGATTGATAATGTTGAGGAACTTCTCCC
AGTCGTTTACACTCCAACTGTTGGTGAAGCTTGCCAGAAATATGGAAGTA
TCTTCAGGCGTCCTCAGGGTCTATACATAAGT