CX295013

Overview
NameCX295013
Unique NameCX295013
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295013 vs. ExPASy Swiss-Prot
Match: PIPNB_PONAB (Phosphatidylinositol transfer protein beta isoform OS=Pongo abelii GN=PITPNB PE=2 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 1.242e-17
Identity = 55/142 (38.73%), Postives = 76/142 (53.52%), Query Frame = 2
Query:  296 SKAPAWLKTFAPADALVMHEEAWNSYPRCKTVI--KCPYFTKFSLTIETVHKADNGRSDNVHNLSEEQLAARQVEVLDIASTARDYWSYAIASNNVDFSKFKSKRTGRGPLSEGWQDRCN-----PVMTAYKLVTIDAPYWG 700
            SK PA+++  AP  +LV HE+AWN+YP C+T++  +C     F + IET HK D G  +NVH L        ++  +DIA   R     A    + D + F+S +T RGPL   W+         P M AYKLVTI   +WG
Sbjct:   66 SKVPAFVRMIAPEGSLVFHEKAWNAYPYCRTIVTNEC-MKDDFFIKIETWHKPDLGTLENVHGLDPNTWKTVEIVHIDIAD--RSQVEPADYKADEDPALFQSVKTKRGPLGPNWKKELANSPDCPQMCAYKLVTIKFKWWG 204          
BLAST of CX295013 vs. ExPASy Swiss-Prot
Match: PITC1_HUMAN (Cytoplasmic phosphatidylinositol transfer protein 1 OS=Homo sapiens GN=PITPNC1 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.767e-17
Identity = 52/139 (37.41%), Postives = 74/139 (53.24%), Query Frame = 2
Query:  296 SKAPAWLKTFAPADALVMHEEAWNSYPRCKTVIKCPYFTKFSLTIETVHKADNGRSDNVHNLSEEQLAARQVEVLDIASTARDYWSYAIASNNVDFSKFKSKRTGRGPLSEGWQDRCNPVMTAYKLVTIDAPYWGFGYR 712
            SK P+W +   P    V  E+AWN YP   T   C +  KFS+ IET ++ + G +D + + +E +   R+V  +DIA        Y     + D   FKS++TGRG L EGW+D   P+M +YKLVT+    WG   R
Sbjct:   66 SKLPSWARAVVPKIFYVT-EKAWNYYPYTITEYTCSFLPKFSIHIETKYEDNKGSNDTIFD-NEAKDVEREVCFIDIACDEIPERYY---KESEDPKHFKSEKTGRGQLREGWRDSHQPIMCSYKLVTVKFEVWGLQTR 199          
BLAST of CX295013 vs. ExPASy Swiss-Prot
Match: PITC1_DROME (Cytoplasmic phosphatidylinositol transfer protein 1 OS=Drosophila melanogaster GN=rdgBbeta PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.614e-17
Identity = 48/135 (35.56%), Postives = 75/135 (55.56%), Query Frame = 2
Query:  296 SKAPAWLKTFAPADALVMHEEAWNSYPRCKTVIKCPYFTKFSLTIETVHKADNGRSDNVHNLSEEQLAARQVEVLDIASTARDYWSYAIASNNVDFSKFKSKRTGRGPLSEGWQDRCNPVMTAYKLVTIDAPYWG 700
            S+ P W++   P    V+ E++WN YP   T   C +  K ++ I+T ++ +NG ++N  +L+E++L  R V+ LDIA    D  S        D   FKS++T RGPL EGW++   P+M +YK+V      WG
Sbjct:   67 SRLPYWIQAICPRVFYVI-EKSWNYYPYTLTEYTCSFIPKLNVLIKTKYEDNNGSTENCLDLTEDELKVRTVDHLDIAF---DEVSAKHYKKEEDPKFFKSEKTNRGPLIEGWRETDKPIMCSYKVVHASFEVWG 197          
BLAST of CX295013 vs. ExPASy Swiss-Prot
Match: PITC1_XENTR (Cytoplasmic phosphatidylinositol transfer protein 1 OS=Xenopus tropicalis GN=pitpnc1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.051e-17
Identity = 51/139 (36.69%), Postives = 73/139 (52.52%), Query Frame = 2
Query:  296 SKAPAWLKTFAPADALVMHEEAWNSYPRCKTVIKCPYFTKFSLTIETVHKADNGRSDNVHNLSEEQLAARQVEVLDIASTARDYWSYAIASNNVDFSKFKSKRTGRGPLSEGWQDRCNPVMTAYKLVTIDAPYWGFGYR 712
            SK P+W +   P    V  E+AWN YP   T   C +  KFS+ IET ++ + G +DN+   SE + A R++  +DIA        Y     + D   F S++TGRG L EGW++   P+M +YKLV +    WG   R
Sbjct:   66 SKLPSWARAVVPKIFYVT-EKAWNYYPYTITEYTCSFLPKFSIHIETKYEDNKGSNDNIFE-SEAKDAEREICFVDIACDEIPERYY---KESEDPKNFVSEKTGRGQLKEGWREAQEPIMCSYKLVAVKFEVWGLQSR 199          
The following BLAST results are available for this feature:
BLAST of CX295013 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
PIPNB_PONAB1.242e-1738.73Phosphatidylinositol transfer protein beta isoform... [more]
PITC1_HUMAN2.767e-1737.41Cytoplasmic phosphatidylinositol transfer protein ... [more]
PITC1_DROME3.614e-1735.56Cytoplasmic phosphatidylinositol transfer protein ... [more]
PITC1_XENTR8.051e-1736.69Cytoplasmic phosphatidylinositol transfer protein ... [more]

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Properties
Property NameValue
Genbank descriptionC05065F06SK DroRLeaf1 Citrus clementina cDNA clone C05065F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295013 ID=CX295013; Name=CX295013; organism=Citrus clementina; type=EST; length=712bp
TGTATTTGGAAGAGGTCAATACACTTTTAAAGTGTATCGTTTCCAAAGGT
AATTCAATGAATCAGAAATAATCTTAATCTGCTAAAGTTTAGTTGTTTTT
ATTATTTGATGATTGGTTCTACCAGATTATGAGCTTACTATAGTCTATTT
TAGTCTCGCTACTATTTATATATGGGTTTAGAAAAAGGAGTTGCAAATTT
TATTTGGTCAGTATAAGTTTATTACCAGCTGCATTGCAGATAGAAGATTT
CAAAATTGGGGGTTATGATTGCCTAACATTACATTTTCTGTTTGTAGTAA
AGCTCCTGCTTGGCTTAAAACTTTTGCGCCAGCAGATGCTCTTGTAATGC
ACGAGGAAGCCTGGAATTCATATCCAAGATGCAAAACAGTAATCAAGTGC
CCGTATTTCACCAAATTCAGTCTCACCATTGAAACTGTTCATAAAGCTGA
CAATGGGCGGTCAGACAATGTGCATAACTTGAGCGAAGAACAACTAGCAG
CCAGACAGGTTGAAGTTCTTGATATTGCTTCAACTGCAAGGGATTATTGG
AGCTATGCCATTGCTAGTAACAACGTAGACTTCTCTAAATTCAAATCAAA
GAGAACTGGACGTGGTCCACTTTCAGAGGGCTGGCAGGATAGGTGCAATC
CTGTTATGACAGCATATAAATTGGTGACTATAGATGCACCATACTGGGGA
TTTGGTTATCGA
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