CX295016

Overview
NameCX295016
Unique NameCX295016
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: STHA_YERPS (Soluble pyridine nucleotide transhydrogenase OS=Yersinia pseudotuberculosis GN=sthA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.975e-15
Identity = 62/232 (26.72%), Postives = 102/232 (43.97%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIP---GQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRITDHGEEIVADVVLFATGR 699
            GG C   G +P K L +  S   E      Y  +    I   +  +L      I +   + +         ++ G+   +  N V V   DGT  +  A +I+IATGSR  R P+      E    SD  L L   P+  ++ G G I  E+ASI+RG+   VDL+  ++  L   D EM   ++ +    G+ +      +++  + +GV      G+++ AD +L+A GR
Sbjct:   42 GGGCTHWGTIPSKALRHAVSRIIEFNQNPLYS-DNARTIKSSFADILNHADRVINQQTRMRQGFYDRNHCHMFSGDASFIDANTVNVRYADGTSDTLQADNIVIATGSRPYR-PVNVDFNHERIYDSDTILQLSHEPQHVIIYGAGVIGCEYASIFRGLSVKVDLINTRDRLLAFLDQEMSDALSYHFWNNGVVIRHNEEFEQIEGTTDGVIVHLKSGKKVKADCLLYANGR 271          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: STHA_YERPP (Soluble pyridine nucleotide transhydrogenase OS=Yersinia pestis (strain Pestoides F) GN=sthA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.975e-15
Identity = 62/232 (26.72%), Postives = 102/232 (43.97%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIP---GQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRITDHGEEIVADVVLFATGR 699
            GG C   G +P K L +  S   E      Y  +    I   +  +L      I +   + +         ++ G+   +  N V V   DGT  +  A +I+IATGSR  R P+      E    SD  L L   P+  ++ G G I  E+ASI+RG+   VDL+  ++  L   D EM   ++ +    G+ +      +++  + +GV      G+++ AD +L+A GR
Sbjct:   42 GGGCTHWGTIPSKALRHAVSRIIEFNQNPLYS-DNARTIKSSFADILNHADRVINQQTRMRQGFYDRNHCHMFSGDASFIDANTVNVRYADGTSDTLQADNIVIATGSRPYR-PVNVDFNHERIYDSDTILQLSHEPQHVIIYGAGVIGCEYASIFRGLSVKVDLINTRDRLLAFLDQEMSDALSYHFWNNGVVIRHNEEFEQIEGTTDGVIVHLKSGKKVKADCLLYANGR 271          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: STHA_YERPN (Soluble pyridine nucleotide transhydrogenase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=sthA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.975e-15
Identity = 62/232 (26.72%), Postives = 102/232 (43.97%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIP---GQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRITDHGEEIVADVVLFATGR 699
            GG C   G +P K L +  S   E      Y  +    I   +  +L      I +   + +         ++ G+   +  N V V   DGT  +  A +I+IATGSR  R P+      E    SD  L L   P+  ++ G G I  E+ASI+RG+   VDL+  ++  L   D EM   ++ +    G+ +      +++  + +GV      G+++ AD +L+A GR
Sbjct:   42 GGGCTHWGTIPSKALRHAVSRIIEFNQNPLYS-DNARTIKSSFADILNHADRVINQQTRMRQGFYDRNHCHMFSGDASFIDANTVNVRYADGTSDTLQADNIVIATGSRPYR-PVNVDFNHERIYDSDTILQLSHEPQHVIIYGAGVIGCEYASIFRGLSVKVDLINTRDRLLAFLDQEMSDALSYHFWNNGVVIRHNEEFEQIEGTTDGVIVHLKSGKKVKADCLLYANGR 271          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: STHA_YERPG (Soluble pyridine nucleotide transhydrogenase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=sthA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.975e-15
Identity = 62/232 (26.72%), Postives = 102/232 (43.97%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIP---GQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRITDHGEEIVADVVLFATGR 699
            GG C   G +P K L +  S   E      Y  +    I   +  +L      I +   + +         ++ G+   +  N V V   DGT  +  A +I+IATGSR  R P+      E    SD  L L   P+  ++ G G I  E+ASI+RG+   VDL+  ++  L   D EM   ++ +    G+ +      +++  + +GV      G+++ AD +L+A GR
Sbjct:   42 GGGCTHWGTIPSKALRHAVSRIIEFNQNPLYS-DNARTIKSSFADILNHADRVINQQTRMRQGFYDRNHCHMFSGDASFIDANTVNVRYADGTSDTLQADNIVIATGSRPYR-PVNVDFNHERIYDSDTILQLSHEPQHVIIYGAGVIGCEYASIFRGLSVKVDLINTRDRLLAFLDQEMSDALSYHFWNNGVVIRHNEEFEQIEGTTDGVIVHLKSGKKVKADCLLYANGR 271          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: STHA_YERPE (Soluble pyridine nucleotide transhydrogenase OS=Yersinia pestis GN=sthA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.975e-15
Identity = 62/232 (26.72%), Postives = 102/232 (43.97%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIP---GQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRITDHGEEIVADVVLFATGR 699
            GG C   G +P K L +  S   E      Y  +    I   +  +L      I +   + +         ++ G+   +  N V V   DGT  +  A +I+IATGSR  R P+      E    SD  L L   P+  ++ G G I  E+ASI+RG+   VDL+  ++  L   D EM   ++ +    G+ +      +++  + +GV      G+++ AD +L+A GR
Sbjct:   42 GGGCTHWGTIPSKALRHAVSRIIEFNQNPLYS-DNARTIKSSFADILNHADRVINQQTRMRQGFYDRNHCHMFSGDASFIDANTVNVRYADGTSDTLQADNIVIATGSRPYR-PVNVDFNHERIYDSDTILQLSHEPQHVIIYGAGVIGCEYASIFRGLSVKVDLINTRDRLLAFLDQEMSDALSYHFWNNGVVIRHNEEFEQIEGTTDGVIVHLKSGKKVKADCLLYANGR 271          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: STHA_YERPB (Soluble pyridine nucleotide transhydrogenase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=sthA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.975e-15
Identity = 62/232 (26.72%), Postives = 102/232 (43.97%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIP---GQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRITDHGEEIVADVVLFATGR 699
            GG C   G +P K L +  S   E      Y  +    I   +  +L      I +   + +         ++ G+   +  N V V   DGT  +  A +I+IATGSR  R P+      E    SD  L L   P+  ++ G G I  E+ASI+RG+   VDL+  ++  L   D EM   ++ +    G+ +      +++  + +GV      G+++ AD +L+A GR
Sbjct:   42 GGGCTHWGTIPSKALRHAVSRIIEFNQNPLYS-DNARTIKSSFADILNHADRVINQQTRMRQGFYDRNHCHMFSGDASFIDANTVNVRYADGTSDTLQADNIVIATGSRPYR-PVNVDFNHERIYDSDTILQLSHEPQHVIIYGAGVIGCEYASIFRGLSVKVDLINTRDRLLAFLDQEMSDALSYHFWNNGVVIRHNEEFEQIEGTTDGVIVHLKSGKKVKADCLLYANGR 271          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: STHA_YERPA (Soluble pyridine nucleotide transhydrogenase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=sthA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.975e-15
Identity = 62/232 (26.72%), Postives = 102/232 (43.97%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIP---GQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRITDHGEEIVADVVLFATGR 699
            GG C   G +P K L +  S   E      Y  +    I   +  +L      I +   + +         ++ G+   +  N V V   DGT  +  A +I+IATGSR  R P+      E    SD  L L   P+  ++ G G I  E+ASI+RG+   VDL+  ++  L   D EM   ++ +    G+ +      +++  + +GV      G+++ AD +L+A GR
Sbjct:   42 GGGCTHWGTIPSKALRHAVSRIIEFNQNPLYS-DNARTIKSSFADILNHADRVINQQTRMRQGFYDRNHCHMFSGDASFIDANTVNVRYADGTSDTLQADNIVIATGSRPYR-PVNVDFNHERIYDSDTILQLSHEPQHVIIYGAGVIGCEYASIFRGLSVKVDLINTRDRLLAFLDQEMSDALSYHFWNNGVVIRHNEEFEQIEGTTDGVIVHLKSGKKVKADCLLYANGR 271          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: STHA_YERP3 (Soluble pyridine nucleotide transhydrogenase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=sthA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.975e-15
Identity = 62/232 (26.72%), Postives = 102/232 (43.97%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIP---GQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRITDHGEEIVADVVLFATGR 699
            GG C   G +P K L +  S   E      Y  +    I   +  +L      I +   + +         ++ G+   +  N V V   DGT  +  A +I+IATGSR  R P+      E    SD  L L   P+  ++ G G I  E+ASI+RG+   VDL+  ++  L   D EM   ++ +    G+ +      +++  + +GV      G+++ AD +L+A GR
Sbjct:   42 GGGCTHWGTIPSKALRHAVSRIIEFNQNPLYS-DNARTIKSSFADILNHADRVINQQTRMRQGFYDRNHCHMFSGDASFIDANTVNVRYADGTSDTLQADNIVIATGSRPYR-PVNVDFNHERIYDSDTILQLSHEPQHVIIYGAGVIGCEYASIFRGLSVKVDLINTRDRLLAFLDQEMSDALSYHFWNNGVVIRHNEEFEQIEGTTDGVIVHLKSGKKVKADCLLYANGR 271          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: DLDH_BUCAP (Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=lpdA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.975e-15
Identity = 68/238 (28.57%), Postives = 119/238 (50.00%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP-IPGQELAI-TSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG---VKRITDHGEEIVA--DVVLFATGRAP 705
            GG C+  GC+P K L++ A    +  +    G   ++ I  D KK+   K   I +L      +     V++ +G+      + V V        +   KH +IATGS+  + P +P ++  I  S +ALSL+ +P R +++GGG I +E A+I+  +GS VD++ R    L   D ++  +  ++++ R   L   T +K + KS++    VK   ++ +E V   D +L A GR+P
Sbjct:   42 GGVCLNVGCIPSKSLLHIAKIIKDASELSESGVFFNKPI-IDIKKINNWKEKIIKKLTTGLSNMGEKRKVRIVQGKALFNTDHSVLVKNKKND-FTIFFKHAIIATGSKPIKIPSLPNEDNRIWNSTDALSLKSIPNRFLIIGGGIIGLEMATIYSALGSKVDIVDRFNAFLPSVDKDITDIYIKSIKKR-FKLLLNTHVKSVEKSKDNDLIVKIAEENSDENVCCYDNILVAIGRSP 276          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: STHA_PROMH (Soluble pyridine nucleotide transhydrogenase OS=Proteus mirabilis (strain HI4320) GN=sthA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.580e-15
Identity = 62/231 (26.84%), Postives = 102/231 (44.16%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIP--GQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRITDHGEEIVADVVLFATGR 699
            GG C   G +P K L +  S   E      Y  +    I+  + ++L++ +  I +   + +         +Y GE   +  + + V   DGT    SA + +IATGSR    P           SD  L LE  P+  ++ G G I  E+ASI+RG+   VDL+  ++  L   D EM   ++ +    GI +        +   ++GV      G+++ AD +L+A GR
Sbjct:   41 GGGCTHWGTIPSKALRHAVSRIIEFNQNPLYS-DQSRLINSSFSQILRQASTVISQQTKMRQGFYERNHCTMYSGEAAFIDDHRISVRYPDGTCDILSADNFIIATGSRPYCPPDVDFSHSRIYNSDTILDLEHEPRHVIIYGAGVIGCEYASIFRGLRVKVDLINTRDHLLSFLDQEMSDALSYHFWNNGIVIRHNEEYDTIEGVDDGVIVHLKSGKKVKADCLLYANGR 270          
The following BLAST results are available for this feature:
BLAST of CX295016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
STHA_YERPS1.975e-1526.72Soluble pyridine nucleotide transhydrogenase OS=Ye... [more]
STHA_YERPP1.975e-1526.72Soluble pyridine nucleotide transhydrogenase OS=Ye... [more]
STHA_YERPN1.975e-1526.72Soluble pyridine nucleotide transhydrogenase OS=Ye... [more]
STHA_YERPG1.975e-1526.72Soluble pyridine nucleotide transhydrogenase OS=Ye... [more]
STHA_YERPE1.975e-1526.72Soluble pyridine nucleotide transhydrogenase OS=Ye... [more]
STHA_YERPB1.975e-1526.72Soluble pyridine nucleotide transhydrogenase OS=Ye... [more]
STHA_YERPA1.975e-1526.72Soluble pyridine nucleotide transhydrogenase OS=Ye... [more]
STHA_YERP31.975e-1526.72Soluble pyridine nucleotide transhydrogenase OS=Ye... [more]
DLDH_BUCAP1.975e-1528.57Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola... [more]
STHA_PROMH2.580e-1526.84Soluble pyridine nucleotide transhydrogenase OS=Pr... [more]

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Properties
Property NameValue
Genbank descriptionC05065F09SK DroRLeaf1 Citrus clementina cDNA clone C05065F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295016 ID=CX295016; Name=CX295016; organism=Citrus clementina; type=EST; length=706bp
GATTCGGCCGAGGGTGGAACCTGTGTCATTCGTGGTTGTGTACCCAAAAA
GATATTGGTCTATGGAGCATCATTTGGAGGTGAACTTGAGGATGCAAGGA
GTTATGGATGGGAGGTACACGAGAAAATTGACTTCGACTGGAAAAAACTT
CTGCAAAAGAAGACAGATGAGATACTCAGATTAAATGGAATTTACAAGCG
ATTATTATCTAATGCTGGGGTAAAATTATATGAAGGGGAGGGAAAGATAG
TTGGTCCAAATGAAGTTGAGGTCACACAACTAGATGGCACTAAGTTAAGT
TACTCAGCAAAGCACATATTGATCGCAACTGGAAGTAGGGCTCAACGTGC
TCCTATTCCTGGCCAGGAGCTGGCTATAACCTCTGACGAGGCATTGAGCT
TGGAAGAATTACCCAAGCGTGCTGTGGTGCTTGGTGGAGGGTACATTGCT
GTTGAGTTTGCTTCCATATGGCGAGGGATGGGTTCTACTGTGGATCTATT
ATTTAGAAAGGAACTTCCATTAAGAGGGTTTGATGATGAAATGCGGGCAG
TAGTTGCCAGAAATCTGGAAGGGAGGGGAATTAATTTGCACCCGAGGACT
ACCATAAAGGAGTTGATTAAGTCAGAGGAGGGTGTAAAACGTATTACAGA
TCATGGTGAAGAGATTGTTGCAGATGTTGTACTCTTTGCCACTGGCAGGG
CACCTA
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