CX295016

Overview
NameCX295016
Unique NameCX295016
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10777 contig Ccv1_Contig10777:354..1059. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: GSHR_SCHPO (Glutathione reductase OS=Schizosaccharomyces pombe GN=pgr1 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 5.720e-31
Identity = 87/235 (37.02%), Postives = 122/235 (51.91%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLS-YSAKHILIATGSR-AQRAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRT-TIKELIKSEEGVKRI-TDHGEEIVADVVLFATGRAP 705
            GGTCV  GCVPKKI+   A    +++ A+  G+   +   FDW  + +K+   I RLNGIY+R ++  GV    G    V P EV V   DG+    +SAK+ILIA G      + IPG E  I SD    LE  PKR  ++G GYIAVE A ++  +G+   +  R+   LR FD  +   +  + +  GIN+H  +   K++ K   G   I    G     D +L+A GRAP
Sbjct:   43 GGTCVNYGCVPKKIMWNIADLVAKMKTAKQNGFPNSQLGSFDWGMIKRKRDAYIGRLNGIYERNVNKDGVAYISGHASFVSPTEVAVDMNDGSGTQVFSAKYILIAVGGHPIWPSHIPGAEYGIDSDGFFELESQPKRVAIVGAGYIAVELAGVFAALGTETHMFIRQSKFLRKFDPIISDGIMDHFQHIGINVHTNSLEFKKVEKLPSGELCIHQQDGSTFNVDTLLWAIGRAP 277          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: TRXR1_BOVIN (Thioredoxin reductase 1, cytoplasmic OS=Bos taurus GN=TXNRD1 PE=2 SV=3)

HSP 1 Score: 134.035 bits (336), Expect = 7.471e-31
Identity = 82/239 (34.31%), Postives = 125/239 (52.30%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG-QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-------VKRITDHGEEIVAD--VVLFATGR 699
            GGTCV  GC+PKK++   A  G  L D+R+YGW V E +  DW+++ +   + I  LN  Y+  L    V      G+ VGP+ ++ T   G +  YSA+  LIATG R +   IPG +E  I+SD+  SL   P + +V+G  Y+A+E A    G+G  V ++ R  L LRGFD +M   +  +++  GI    +    ++ + E G       + + TD  + I  +   VL A GR
Sbjct:   56 GGTCVNVGCIPKKLMHQAALLGQALRDSRNYGWNVEETVKHDWERMTEAVQNHIGSLNWGYRVALREKKVTYENAYGEFVGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSIL-LRGFDQDMANKIGEHMQEHGIKFIRQFVPIKVEQIEAGTPGRLRVIAKSTDSDQTIEGEYNTVLLAIGR 293          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: TRXR1_PIG (Thioredoxin reductase 1, cytoplasmic OS=Sus scrofa GN=TXNRD1 PE=2 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 2.839e-30
Identity = 83/239 (34.73%), Postives = 125/239 (52.30%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG-QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG------VKRITDHGEEIVA---DVVLFATGR 699
            GGTCV   C+PKK++   A  G  L D+R+YGW V E I  DW+++ +   + I  LN  Y+  L    V      G+ VGP+ ++ T   G +  YSA+  LIATG R +   IPG +E  I+SD+  SL   P + +V+G  Y+A+E A    G+G  V ++ R  L LRGFD +M   +  ++E  GI    +    ++ + E G      V   + + EEI+    + V+ A GR
Sbjct:   56 GGTCVNVSCIPKKLMHQAALLGQALRDSRNYGWNVEETIKHDWERMTEAVQNHIGSLNWGYRVALREKKVTYENAYGQFVGPHRIKATNNKGKEKIYSAEKFLIATGERPRYLGIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSIL-LRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGR 293          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: GSHR_CALJA (Glutathione reductase, mitochondrial OS=Callithrix jacchus GN=GSR PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.324e-30
Identity = 79/212 (37.26%), Postives = 114/212 (53.77%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATG---SRAQRAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVK 639
            GGTCV  GCVPKK++   A     L D   YG+   E   F+W+ + +K+   + RLN IY+  L+ A +++  G        +  + ++ G K  Y+A HILIATG   S    + IPG  L ITSD    LEELP R+V++G GYIAVE A I   +GS   L+ R +  LR FD  +       LE  G+ +   + +KE+ K+  G++
Sbjct:   99 GGTCVNVGCVPKKVMWNTAVHSEFLHDHGDYGFSSCEG-KFNWRVIKEKRDTYVSRLNTIYQNNLTKAHIEIIHGHAVFTSDTKPTI-EVSGRK--YTAPHILIATGGMPSSPHESQIPGASLGITSDGFFELEELPSRSVIVGAGYIAVEIAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTSSGLE 306          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: GSHR_CAEEL (Probable glutathione reductase 2 OS=Caenorhabditis elegans GN=trxr-2 PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 6.324e-30
Identity = 79/237 (33.33%), Postives = 125/237 (52.74%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV--HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDG--TKLSYSAKHILIATGSRAQRAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRITDHGEEIVA--DVVLFATGRAP 705
            GGTC   GC+PKK++   A  G EL+ A  YGW     EKI  DW  L +   D +   N IY+  L+   +  +    + V  +++ +T  D   TK   SA +++I+TG R +   IPG EL ITSD+  +L  +P + +++GGGY+A+E A         V++L R  +PL+GFD +    V  +L+  G+ +     + E +++    K++T  G   V   D V++A GR P
Sbjct:   64 GGTCANVGCIPKKLMHQAAIVGKELKHADKYGWNGIDQEKIKHDWNVLSKNVNDRVKANNWIYRVQLNQKKINYFNAYAEFVDKDKIVITGTDKNKTKNFLSAPNVVISTGLRPKYPNIPGAELGITSDDLFTLASVPGKTLIVGGGYVALECAGFLSAFNQNVEVLVR-SIPLKGFDRDCVHFVMEHLKTTGVKVKEHVEV-ERVEAVGSKKKVTFTGNGGVEEYDTVIWAAGRVP 298          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: TRXR1_DROME (Thioredoxin reductase 1, mitochondrial OS=Drosophila melanogaster GN=Trxr-1 PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 8.260e-30
Identity = 85/236 (36.02%), Postives = 131/236 (55.51%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQ-ELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG---VK-RITDHGEEI--VADVVLFATGR 699
            GGTCV  GC+PKK++   +  G  + +A +YGW V EKI  DW KL+Q   + I  +N + +  L +  V+   G G  V  + + + +L   + + +A+  +IA G R +   IPG  E  ITSD+  SL+  P + +V+G GYI +E A   +G+G    ++ R  + LRGFD +M  +VA ++E RGI    +T    + K ++G   VK +  + GEE   V D VL+A GR
Sbjct:  159 GGTCVNVGCIPKKLMHQASLLGEAVHEAAAYGWNVDEKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTL-LAKLKSGERTITAQTFVIAVGGRPRYPDIPGAVEYGITSDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVR-SIVLRGFDQQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEEAEDVYDTVLWAIGR 392          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: TRXR2_MOUSE (Thioredoxin reductase 2, mitochondrial OS=Mus musculus GN=Txnrd2 PE=1 SV=4)

HSP 1 Score: 127.487 bits (319), Expect = 6.992e-29
Identity = 80/239 (33.47%), Postives = 122/239 (51.05%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQ-RAPIPGQ-ELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRIT--DH--GEEIVA--DVVLFATGRAP 705
            GGTCV  GC+PKK++   A  GG + DA  YGWEV + +  +WK + +   + +  LN  ++  L +  VK +  +   V  + V      G     SA+HI+IATG R +    + G  E  ITSD+   L+E P + +V+G  Y+A+E A    G+G    ++ R  +PLRGFD +M ++V  ++E  G           + K      ++T  DH  G+E     D VL+A GR P
Sbjct:   83 GGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGWEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGALEYGITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTVMMR-SIPLRGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVP 320          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: GSHR_HUMAN (Glutathione reductase, mitochondrial OS=Homo sapiens GN=GSR PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 6.992e-29
Identity = 85/243 (34.98%), Postives = 124/243 (51.03%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATG---SRAQRAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG--VKRITDHGEEIV-------ADVVLFATGRAP 705
            GGTCV  GCVPKK++   A     + D   YG+   E   F+W+ + +K+   + RLN IY+  L+ + +++  G        +  + ++ G K  Y+A HILIATG   S    + IPG  L ITSD    LEELP R+V++G GYIAVE A I   +GS   L+ R +  LR FD  +       LE  G+ +   + +KE+ K+  G  V  +T     +         D +L+A GR P
Sbjct:   99 GGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEG-KFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTI-EVSGKK--YTAPHILIATGGMPSTPHESQIPGASLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVP 337          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: TRXR2_HUMAN (Thioredoxin reductase 2, mitochondrial OS=Homo sapiens GN=TXNRD2 PE=1 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 9.132e-29
Identity = 79/239 (33.05%), Postives = 125/239 (52.30%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQ-RAPIPGQ-ELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRIT----DHGEEIVA--DVVLFATGRAP 705
            GGTCV  GC+PKK++   A  GG ++DA +YGWEV + +  DW+K+ +   + +  LN  ++  L +  VK +  +   V  + V      G ++  SA HI+IATG R +    I G  E  ITSD+   L+E P + +V+G  Y+A+E A    G+G    ++ R  +PLRGFD +M ++V  ++   G           + +  +G  ++T      G+E     D VL+A GR P
Sbjct:   83 GGTCVNVGCIPKKLMHQAALLGGLIQDAPNYGWEVAQPVPHDWRKMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVCGVAKGGKEILLSADHIIIATGGRPRYPTHIEGALEYGITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTIMMR-SIPLRGFDQQMSSMVIEHMASHGTRFLRGCAPSRVRRLPDGQLQVTWEDSTTGKEDTGTFDTVLWAIGRVP 320          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: GSHR_ECOLI (Glutathione reductase OS=Escherichia coli (strain K12) GN=gor PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.132e-29
Identity = 79/233 (33.91%), Postives = 118/233 (50.64%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELED-ARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRI-TDHGEEIVADVVLFATGRAP 705
            GGTCV  GCVPKK++ + A     +      YG++      F+W+ L+  +T  I R++  Y+ +L    V + +G  + V    +EV   +G  ++  A HILIATG R     IPG E  I SD   +L  LP+R  V+G GYIAVE A +  G+G+   L  RK  PLR FD  +   +   +   G  LH     K ++K+ +G   +  + G     D +++A GR P
Sbjct:   39 GGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTIN-KFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEV---NGETIT--ADHILIATGGRPSHPDIPGVEYGIDSDGFFALPALPERVAVVGAGYIAVELAGVINGLGAKTHLFVRKHAPLRSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREP 265          
The following BLAST results are available for this feature:
BLAST of CX295016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
GSHR_SCHPO5.720e-3137.02Glutathione reductase OS=Schizosaccharomyces pombe... [more]
TRXR1_BOVIN7.471e-3134.31Thioredoxin reductase 1, cytoplasmic OS=Bos taurus... [more]
TRXR1_PIG2.839e-3034.73Thioredoxin reductase 1, cytoplasmic OS=Sus scrofa... [more]
GSHR_CALJA6.324e-3037.26Glutathione reductase, mitochondrial OS=Callithrix... [more]
GSHR_CAEEL6.324e-3033.33Probable glutathione reductase 2 OS=Caenorhabditis... [more]
TRXR1_DROME8.260e-3036.02Thioredoxin reductase 1, mitochondrial OS=Drosophi... [more]
TRXR2_MOUSE6.992e-2933.47Thioredoxin reductase 2, mitochondrial OS=Mus musc... [more]
GSHR_HUMAN6.992e-2934.98Glutathione reductase, mitochondrial OS=Homo sapie... [more]
TRXR2_HUMAN9.132e-2933.05Thioredoxin reductase 2, mitochondrial OS=Homo sap... [more]
GSHR_ECOLI9.132e-2933.91Glutathione reductase OS=Escherichia coli (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC05065F09SK DroRLeaf1 Citrus clementina cDNA clone C05065F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295016 ID=CX295016; Name=CX295016; organism=Citrus clementina; type=EST; length=706bp
GATTCGGCCGAGGGTGGAACCTGTGTCATTCGTGGTTGTGTACCCAAAAA
GATATTGGTCTATGGAGCATCATTTGGAGGTGAACTTGAGGATGCAAGGA
GTTATGGATGGGAGGTACACGAGAAAATTGACTTCGACTGGAAAAAACTT
CTGCAAAAGAAGACAGATGAGATACTCAGATTAAATGGAATTTACAAGCG
ATTATTATCTAATGCTGGGGTAAAATTATATGAAGGGGAGGGAAAGATAG
TTGGTCCAAATGAAGTTGAGGTCACACAACTAGATGGCACTAAGTTAAGT
TACTCAGCAAAGCACATATTGATCGCAACTGGAAGTAGGGCTCAACGTGC
TCCTATTCCTGGCCAGGAGCTGGCTATAACCTCTGACGAGGCATTGAGCT
TGGAAGAATTACCCAAGCGTGCTGTGGTGCTTGGTGGAGGGTACATTGCT
GTTGAGTTTGCTTCCATATGGCGAGGGATGGGTTCTACTGTGGATCTATT
ATTTAGAAAGGAACTTCCATTAAGAGGGTTTGATGATGAAATGCGGGCAG
TAGTTGCCAGAAATCTGGAAGGGAGGGGAATTAATTTGCACCCGAGGACT
ACCATAAAGGAGTTGATTAAGTCAGAGGAGGGTGTAAAACGTATTACAGA
TCATGGTGAAGAGATTGTTGCAGATGTTGTACTCTTTGCCACTGGCAGGG
CACCTA
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