CX295016

Overview
NameCX295016
Unique NameCX295016
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10777 contig Ccv1_Contig10777:354..1059. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: TRXR3_MOUSE (Thioredoxin reductase 3 (Fragment) OS=Mus musculus GN=Txnrd3 PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.193e-28
Identity = 81/244 (33.20%), Postives = 122/244 (50.00%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG-QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTT--------------IKELIKSEEGVKRITDHGEEIVADVVLFATGR 699
            GGTCV  GC+PKK++   A  G  L+DA+ YGWE ++++  +W+ + +     I  LN  Y+  L   GV      G+ V  ++++ T   G +  Y+A   +IATG R +   I G +E  ITSD+  SL   P   +V+G  Y+ +E A    G+G  V ++ R  L LRGFD EM   V   LE +G+    + T              +K + KS EG + +     E + + VL A GR
Sbjct:  254 GGTCVNVGCIPKKLMHQAALLGHALQDAKKYGWEYNQQVKHNWEAMTEAIQSHIGSLNWGYRVTLREKGVTYVNSFGEFVDLHKIKATNKKGQETFYTASKFVIATGERPRYLGIQGDKEYCITSDDLFSLPYCPGCTLVVGASYVGLECAGFLAGLGLDVTVMVRSVL-LRGFDQEMAEKVGSYLEQQGVKFQRKFTPILVQQLEKGLPGKLKVVAKSTEGPETV-----EGIYNTVLLAIGR 491          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: TRXR2_RAT (Thioredoxin reductase 2, mitochondrial OS=Rattus norvegicus GN=Txnrd2 PE=1 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 1.193e-28
Identity = 80/239 (33.47%), Postives = 122/239 (51.05%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQ-RAPIPGQ-ELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRIT----DHGEEIVA--DVVLFATGRAP 705
            GGTCV  GC+PKK++   A  GG + DA+ YGWEV + +  +WK + +   + +  LN  ++  L +  VK +  +   V  + V      G     SAKHI+IATG R +    + G  E  ITSD+   L+E P + +V+G  Y+A+E A    G+G    ++ R  +PLRGFD +M ++V  ++E  G           + K      ++T      G+E V   D VL+A GR P
Sbjct:   85 GGTCVNVGCIPKKLMHQAALLGGMIRDAQHYGWEVAQPVQHNWKAMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVNEHTVHGVDKAGKVTQLSAKHIVIATGGRPKYPTQVKGALEHGITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTVMMR-SVPLRGFDQQMASLVTEHMESHGTRFLKGCVPSLIRKLPTNQLQVTWEDLASGKEDVGTFDTVLWAIGRVP 322          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: GSHR_MOUSE (Glutathione reductase, mitochondrial OS=Mus musculus GN=Gsr PE=2 SV=3)

HSP 1 Score: 125.176 bits (313), Expect = 3.470e-28
Identity = 78/213 (36.62%), Postives = 115/213 (53.99%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIV-GPNEVEVTQLDGTKLSYSAKHILIATG---SRAQRAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVK 639
            GGTCV  GCVPKK++   A     + D   YG++  E   F W  + QK+   + RLN IY+  L+ + +++  G      GP      +++G K  ++A HILIATG   +    + IPG  L ITSD    LE+LP R+V++G GYIAVE A I   +GS   L+ R +  LR FD  + +     LE  G+ +   T +KE+ K+  G++
Sbjct:   77 GGTCVNVGCVPKKVMWNTAVHSEFMHDHVDYGFQSCEG-KFSWHVIKQKRDAYVSRLNTIYQNNLTKSHIEIIHGYATFADGPRPT--VEVNGKK--FTAPHILIATGGVPTVPHESQIPGASLGITSDGFFQLEDLPSRSVIVGAGYIAVEIAGILSALGSKTSLMIRHDKVLRNFDSLISSNCTEELENAGVEVLKFTQVKEVKKTSSGLE 284          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: DLDH_MYCPN (Dihydrolipoyl dehydrogenase OS=Mycoplasma pneumoniae GN=pdhD PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.532e-28
Identity = 76/239 (31.80%), Postives = 131/239 (54.81%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG------QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRITDHGEE--IVADVVLFATGRAP 705
            GG C+  GC+P K L+  A     L  A+ YG  ++ ++  +W +LL++K   + +L G  K ++++A  +   GE K++ PN VEV        +Y+ K I++ATGSR +   +PG          I S +ALSLE +P++ VV+GGG I +EFA ++  +GS V +L   +  L  FD E+  +VA+ L+ + + +    T  ++ ++       + +G+E  +V D +L + GR P
Sbjct:   37 GGVCLNVGCIPTKTLLKRAKIVDYLRHAQDYGISINGQVALNWNQLLEQKGKVVSKLVGGVKAIIASAKAETVMGEAKVLDPNTVEV-----AGKTYTTKSIVVATGSRPRYLTLPGFAEARQNGFVIDSTQALSLEGVPRKLVVVGGGVIGIEFAFLYASLGSEVTILQGVDRILEIFDTEVSDLVAKLLQTKNVKI---ITNAQVTRANNNEVFYSQNGQEGSVVGDRILVSIGRIP 267          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: DLDH_MYCGE (Dihydrolipoyl dehydrogenase OS=Mycoplasma genitalium GN=pdhD PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.249e-27
Identity = 74/237 (31.22%), Postives = 131/237 (55.27%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELA------ITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRITDHGEE--IVADVVLFATGR 699
            GG C+  GC+P K L+  A     L  A+ YG  ++ +   DWK+LL++K + + +L    K ++  A V+  EGE  ++  N+V+V        +Y+  +I++ATGSR +   +PG E A      I S +AL+LE +PK+ VV+GGG I VEFA ++  +GS V ++   +  L   D ++  ++++ L+ +G+ +    T   ++++E      T +G E  ++ D +L + GR
Sbjct:   37 GGVCLNVGCIPTKTLLKRAKIIDYLVHAKDYGITINGQAKLDWKQLLKQKQEVVDKLVAGVKTIIKGAKVESIEGEATVIDKNKVQV-----NNTTYTTNNIIVATGSRPRYLTLPGFEKAQQAGFIIDSTQALALEGVPKKFVVVGGGVIGVEFAFLFASLGSEVTIIQGVDRILEVCDSDVSELISKTLKNKGVQI---ITNAHVVRAENNQLFYTVNGVEQSVIGDKILVSIGR 265          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: TRXR3_HUMAN (Thioredoxin reductase 3 OS=Homo sapiens GN=TXNRD3 PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.837e-27
Identity = 81/244 (33.20%), Postives = 120/244 (49.18%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG-QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPR--------------TTIKELIKSEEGVKRITDHGEEIVADVVLFATGR 699
            GGTCV  GC+PKK++   A  G  L D+R +GWE ++++  +W+ + +   + I  LN  Y+  L    V      G+ V  ++++ T   G +  Y+A   +IATG R +   I G +E  ITSD+  SL   P + +V+G  Y+A+E A    G G  V ++ R  L LRGFD EM   V   +E  G+    +                +K L KS EG + I     E V + VL A GR
Sbjct:  311 GGTCVNVGCIPKKLMHQAALLGQALCDSRKFGWEYNQQVRHNWETMTKAIQNHISSLNWGYRLSLREKAVAYVNSYGEFVEHHKIKATNKKGQETYYTAAQFVIATGERPRYLGIQGDKEYCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVTVMVRSIL-LRGFDQEMAEKVGSYMEQHGVKFLRKFIPVMVQQLEKGSPGKLKVLAKSTEGTETI-----EGVYNTVLLAIGR 548          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: GSHR_DEBHA (Glutathione reductase OS=Debaryomyces hansenii GN=GLR1 PE=3 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 1.904e-26
Identity = 82/253 (32.41%), Postives = 127/253 (50.20%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV-HEKI---DFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPN-EVEVTQLDGTKLSY---------------SAKHILIATGSRAQRAP-IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMR-AVVARNLEGRGINLHPRT-TIKELIKSEEGVKRIT-DHGEEIVADVVLFATGR 699
            GGTCV  GCVPKK++ Y      +    +SYG     +K+   DFDW     K+   + RLNGIY+R L N GV    G       N +VEVT     +LS+               +    LIATG  A   P + G EL  TSD    L++ PK   V+G GYI VE + I++ +GS   L+ R +  LR FD+ ++ ++     +  G+N+  ++ ++ ++ K +   K+IT  +G+ +  D +++  GR
Sbjct:   46 GGTCVNVGCVPKKVMWYAGDLAEKRHHLKSYGLSTTDDKVKYGDFDWSTFKDKRDAYVKRLNGIYERNLKNEGVDYIYGFAHFANSNGDVEVTLTGDQELSFLEEGKEFKKDEKLVFAGSKTLIATGGYAINPPNVEGHELGTTSDGFFELQKQPKSVAVVGAGYIGVELSGIFKALGSETHLVIRGDTVLRSFDESIQNSITDYYTDKLGVNIIKQSGSVSKVEKIDGDRKKITLGNGQVLEVDELIWTMGR 298          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: DLDH1_ARATH (Dihydrolipoyl dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=LPD1 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.248e-26
Identity = 76/241 (31.54%), Postives = 124/241 (51.45%), Query Frame = 1
Query:    7 AEGGTCVIRGCVPKKILVYGASFGGELEDA-RSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP--IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRITDHGEE-----IVADVVLFATGRAP 705
            A GGTC+  GC+P K L++ +    E + +  ++G +V   ++ D   +L +K + +  L    + L     V   +G GK + PNEV V  +DG       KHI++ATGS  +  P     ++  ++S  ALSL E+PK+ +V+G GYI +E  S+W  +GS V ++      +   D E+R    R+LE + +    +T +  +  S +GVK   +  E      + ADVVL + GR P
Sbjct:   77 ALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGIKV-SSVEVDLPAMLAQKDNAVKNLTRGIEGLFKKNKVTYVKGYGKFISPNEVSVETIDGGNTIVKGKHIIVATGSDVKSLPGITIDEKKIVSSTGALSLSEVPKKLIVIGAGYIGLEMGSVWGRLGSEVTVVEFAGDIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVSVDSSSDGVKLTVEPAEGGEQSILEADVVLVSAGRTP 316          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: DLDH_ACHLA (Dihydrolipoyl dehydrogenase (Fragment) OS=Acholeplasma laidlawii GN=pdhD PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.236e-26
Identity = 79/243 (32.51%), Postives = 124/243 (51.03%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQE------LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRITDH-------GEE--IVADVVLFATG 696
            GG C+  GC+P K  +  A     ++ +  +G     ++ FDW K++ +K   + +L      LL   GV +Y G G I   NEV V   +G  L    K+++IATGS A   PIPG +      + +TS E L+++  PK  V++GGG I VEFA+++   GS V ++   +  L   DD++R   A+ L+  GI +        L K+E  VK++ DH       G+E  I  D++L + G
Sbjct:   39 GGICLNHGCIPTKTFLKSAKVFNTVKKSMDFGVSTSGEVGFDWSKIVSRKDGVVKQLTNGVAFLLKKNGVDVYNGFGDIKSANEVVV---NGESLK--TKNVIIATGSSAVVPPIPGVKEAYEKGIVVTSRELLNVKNYPKSIVIVGGGVIGVEFATVFNSFGSKVTIIEMMDGILPTMDDDIRVAYAKTLKRDGIEI--------LTKAE--VKKVDDHKVTYSLDGKETTIEGDLILMSVG 266          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: DLDH2_ARATH (Dihydrolipoyl dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=LPD2 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.236e-26
Identity = 76/241 (31.54%), Postives = 124/241 (51.45%), Query Frame = 1
Query:    7 AEGGTCVIRGCVPKKILVYGASFGGELEDA-RSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP--IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRITDHGE-----EIVADVVLFATGRAP 705
            A GGTC+  GC+P K L++ +    E +    ++G +V   ++ D   +L +K   +  L    + L     V   +G GK + P+EV V  +DG  +    KHI++ATGS  +  P     ++  ++S  ALSL E+PK+ +V+G GYI +E  S+W  +GS V ++      +   D E+R    R+LE + +    +T +  +  S +GVK I +  E      + ADVVL + GR P
Sbjct:   77 ALGGTCLNVGCIPSKALLHSSHMYHEAKHVFANHGVKV-SSVEVDLPAMLAQKDTAVKNLTRGVEGLFKKNKVNYVKGYGKFLSPSEVSVDTIDGENVVVKGKHIIVATGSDVKSLPGITIDEKKIVSSTGALSLTEIPKKLIVIGAGYIGLEMGSVWGRLGSEVTVVEFAADIVPAMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDSSGDGVKLIVEPAEGGEQTTLEADVVLVSAGRTP 316          
The following BLAST results are available for this feature:
BLAST of CX295016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
TRXR3_MOUSE1.193e-2833.20Thioredoxin reductase 3 (Fragment) OS=Mus musculus... [more]
TRXR2_RAT1.193e-2833.47Thioredoxin reductase 2, mitochondrial OS=Rattus n... [more]
GSHR_MOUSE3.470e-2836.62Glutathione reductase, mitochondrial OS=Mus muscul... [more]
DLDH_MYCPN4.532e-2831.80Dihydrolipoyl dehydrogenase OS=Mycoplasma pneumoni... [more]
DLDH_MYCGE2.249e-2731.22Dihydrolipoyl dehydrogenase OS=Mycoplasma genitali... [more]
TRXR3_HUMAN3.837e-2733.20Thioredoxin reductase 3 OS=Homo sapiens GN=TXNRD3 ... [more]
GSHR_DEBHA1.904e-2632.41Glutathione reductase OS=Debaryomyces hansenii GN=... [more]
DLDH1_ARATH3.248e-2631.54Dihydrolipoyl dehydrogenase 1, mitochondrial OS=Ar... [more]
DLDH_ACHLA7.236e-2632.51Dihydrolipoyl dehydrogenase (Fragment) OS=Acholepl... [more]
DLDH2_ARATH7.236e-2631.54Dihydrolipoyl dehydrogenase 2, mitochondrial OS=Ar... [more]

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Properties
Property NameValue
Genbank descriptionC05065F09SK DroRLeaf1 Citrus clementina cDNA clone C05065F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295016 ID=CX295016; Name=CX295016; organism=Citrus clementina; type=EST; length=706bp
GATTCGGCCGAGGGTGGAACCTGTGTCATTCGTGGTTGTGTACCCAAAAA
GATATTGGTCTATGGAGCATCATTTGGAGGTGAACTTGAGGATGCAAGGA
GTTATGGATGGGAGGTACACGAGAAAATTGACTTCGACTGGAAAAAACTT
CTGCAAAAGAAGACAGATGAGATACTCAGATTAAATGGAATTTACAAGCG
ATTATTATCTAATGCTGGGGTAAAATTATATGAAGGGGAGGGAAAGATAG
TTGGTCCAAATGAAGTTGAGGTCACACAACTAGATGGCACTAAGTTAAGT
TACTCAGCAAAGCACATATTGATCGCAACTGGAAGTAGGGCTCAACGTGC
TCCTATTCCTGGCCAGGAGCTGGCTATAACCTCTGACGAGGCATTGAGCT
TGGAAGAATTACCCAAGCGTGCTGTGGTGCTTGGTGGAGGGTACATTGCT
GTTGAGTTTGCTTCCATATGGCGAGGGATGGGTTCTACTGTGGATCTATT
ATTTAGAAAGGAACTTCCATTAAGAGGGTTTGATGATGAAATGCGGGCAG
TAGTTGCCAGAAATCTGGAAGGGAGGGGAATTAATTTGCACCCGAGGACT
ACCATAAAGGAGTTGATTAAGTCAGAGGAGGGTGTAAAACGTATTACAGA
TCATGGTGAAGAGATTGTTGCAGATGTTGTACTCTTTGCCACTGGCAGGG
CACCTA
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