CX295016

Overview
NameCX295016
Unique NameCX295016
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: DLDH_PEA (Dihydrolipoyl dehydrogenase, mitochondrial OS=Pisum sativum GN=LPD PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.105e-25
Identity = 79/242 (32.64%), Postives = 129/242 (53.31%), Query Frame = 1
Query:    7 AEGGTCVIRGCVPKKILVYGASFGGELEDA-RSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP--IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLL-FRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRITD---HGEE--IVADVVLFATGRAP 705
            A GGTC+  GC+P K L++ +    E + +  ++G +V   ++ D   ++ +K   +  L    + L     V   +G GK V P+E+ V  ++G       KHI+IATGS  +  P     ++  ++S  AL+L E+PK+ VV+G GYI +E  S+W  +GS V ++ F  E+ +   D E+R    R+LE +G+    +T +  +  S +GVK   +    GE+  I ADVVL + GR P
Sbjct:   71 ALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKV-SNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDEKKIVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI-VPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTP 310          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: TRXR2_BOVIN (Thioredoxin reductase 2, mitochondrial OS=Bos taurus GN=TXNRD2 PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.045e-24
Identity = 77/239 (32.22%), Postives = 118/239 (49.37%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQ-RAPIPGQ-ELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRIT------DHGEEIVADVVLFATGRAP 705
            GGTCV  GC+PKK++   A  GG + DA  YGW V  +    W  L     + +  LN  ++  L +  VK +  +   V  + V      G +   SA+HI+IATG R +    I G  E  ITSD+   L+E P + +V+G  Y+A+E A +  G+G    ++ R  +PLR FD +M ++V  ++ G G  +      +++ K      R+T      D  +    D VL+A GR P
Sbjct:   71 GGTCVNVGCIPKKLMHQAALLGGMIRDAPHYGWGV-AQAPHSWATLADAVQNHVKSLNWGHRIQLQDRKVKYFNVKASFVDTHTVCGVSKGGEETLLSAEHIVIATGGRPRYPTHIEGALEYGITSDDLFWLKESPGKTLVVGASYVALECAGLLTGLGLDTTVMIR-SVPLRAFDQQMASLVTEHMAGHGTRILRGCAPEKVEKLPGQQLRVTWVDLTSDRKDAGTFDTVLWAIGRVP 307          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: DLDH_DICDI (Dihydrolipoyl dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=lpd PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.328e-24
Identity = 74/240 (30.83%), Postives = 114/240 (47.50%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG--QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRIT-------DHGEEIVADVVLFATGRAP 705
            GGTC+  GC+P K L+  +    E     S        ++ D   ++Q K   +  L    + L     VK  +G GKI GPN VEVT  DG+  +   K+I+IATGS     P     +E  I+S  AL+L+ +PK+ +V+GGG I +E  S+W  +GS   ++        G D E+     ++LE + +  H  T +  ++K  +G   +T            + AD VL + GR P
Sbjct:   58 GGTCLNVGCIPSKALLNASHLYEEATTKMSKYGVKCSGVELDLGAMMQYKDKSVSGLTSGIEGLFKKNKVKYDKGFGKITGPNTVEVTLNDGSVKTIETKNIVIATGSEVTSLPNVNIDEESIISSTGALALKSVPKKLIVIGGGVIGLELGSVWSRLGSETTVVEFTNRIAAGADGEVAKKFQKSLEKQHMKFHLETKVTSVVKKSDGKVTVTVEQVGAGGFTGTLEADAVLVSVGRRP 297          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: TRXR2_DROME (Thioredoxin reductase 2, mitochondrial OS=Drosophila melanogaster GN=Trxr-2 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.509e-23
Identity = 73/238 (30.67%), Postives = 121/238 (50.84%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHE-KIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTK-LSYSAKHILIATGSRAQRAPIPGQ-ELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRI------TDHGEEIVADVVLFATGR 699
            GGTCV  GC+PKK++   +  G  + +A +YGW V +  I  DW+KL++   + I  +N + +  L +  V+           + +E   + G +    +++++++A G R +   IPG  EL ITSD+  S E  P R +V+G GY+ +E A   +G+G    ++ R  + LRGFD +M  ++A  +  RGI     T  K + +  +G   +      T      V D VL+A GR
Sbjct:   76 GGTCVNVGCIPKKLMHQASLLGEAVHEAVAYGWNVDDTNIRPDWRKLVRSVQNHIKSVNWVTRVDLRDKKVEYVNSMATFRDSHTIEYVAMPGAEHRQVTSEYVVVAVGGRPRYPDIPGAVELGITSDDIFSYEREPGRTLVVGAGYVGLECACFLKGLGYEPTVMVR-SIVLRGFDRQMSELLAAMMTERGIPFLGTTIPKAVERQADGRLLVRYRNTTTQMDGSDVFDTVLWAIGR 312          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: TRXR1_CAEEL (Thioredoxin reductase 1 OS=Caenorhabditis elegans GN=trxr-1 PE=2 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.509e-23
Identity = 64/192 (33.33%), Postives = 96/192 (50.00%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHE-KIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG-QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGI 582
            GGTCV  GC+PKK++   +  G  + DA+ YGW++ E K++  W  L     D I  LN  Y+  L    V      G+  GP E+  T         +A   LI+TG R +   IPG +E  ITSD+   L   P + + +G  Y+++E A    G G  V ++ R  L LRGFD +M   + +++   G+
Sbjct:  216 GGTCVNVGCIPKKLMHQASLLGHSIHDAKKYGWKLPEGKVEHQWNHLRDSVQDHIASLNWGYRVQLREKTVTYINSYGEFTGPFEISATNKKKKVEKLTADRFLISTGLRPKYPEIPGVKEYTITSDDLFQLPYSPGKTLCVGASYVSLECAGFLHGFGFDVTVMVRSIL-LRGFDQDMAERIRKHMIAYGM 406          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: TRXR_PLAF5 (Thioredoxin reductase OS=Plasmodium falciparum (isolate FCH-5) GN=TR PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.971e-23
Identity = 81/239 (33.89%), Postives = 123/239 (51.46%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELE-DARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGT---KLSYSAKHILIATGSRAQRAPIP-----GQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGV-KRITDHGEEIVADVVLFATGR 699
            GGTCV  GCVPKK++ Y    G   + D+++YGW+  + +  DWKKL+      I  LN  Y   L ++ VK   G  K+   N V    L G    + + + K+ILIATG R     IP      +EL+ITSD+  SL++ P + +V+G  Y+A+E +     +G  V +  R  + LRGFD +    V   +E +G+        K+L K ++ +    +D   E+  D VL+A GR
Sbjct:   85 GGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGWKF-DNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLAKLKDKNTVSY-YLKGDLSKEETVTGKYILIATGCRPH---IPDDVEGAKELSITSDDIFSLKKDPGKTLVVGASYVALECSGFLNSLGYDVTVAVR-SIVLRGFDQQCAVKVKLYMEEQGVMFKNGILPKKLTKMDDKILVEFSDKTSELY-DTVLYAIGR 316          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: TRXR2_PLAF7 (Thioredoxin reductase 2 OS=Plasmodium falciparum (isolate 3D7) GN=trxr2 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.971e-23
Identity = 81/239 (33.89%), Postives = 123/239 (51.46%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELE-DARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGT---KLSYSAKHILIATGSRAQRAPIP-----GQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGV-KRITDHGEEIVADVVLFATGR 699
            GGTCV  GCVPKK++ Y    G   + D+++YGW+  + +  DWKKL+      I  LN  Y   L ++ VK   G  K+   N V    L G    + + + K+ILIATG R     IP      +EL+ITSD+  SL++ P + +V+G  Y+A+E +     +G  V +  R  + LRGFD +    V   +E +G+        K+L K ++ +    +D   E+  D VL+A GR
Sbjct:  161 GGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGWKF-DNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLAKLKDKNTVSY-YLKGDLSKEETVTGKYILIATGCRPH---IPDDVEGAKELSITSDDIFSLKKDPGKTLVVGASYVALECSGFLNSLGYDVTVAVR-SIVLRGFDQQCAVKVKLYMEEQGVMFKNGILPKKLTKMDDKILVEFSDKTSELY-DTVLYAIGR 392          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: GSHR_PLAFK (Glutathione reductase OS=Plasmodium falciparum (isolate K1 / Thailand) GN=GR2 PE=1 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 2.574e-23
Identity = 80/250 (32.00%), Postives = 129/250 (51.60%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLS------------YSAKHILIATGSRAQRAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIK-SEEGVK------RITDHGEEIVADVVLFATGRAP 705
            GGTCV  GCVPKKI+   AS    LE++R YG++   K  F+   L++++   I RLN IY++ LS   V LYEG    +  N +    + GTK +               ++ILIA G++    P+ G E  I+SDE  +++E  K+  ++G GYIAVE  ++ + +G    +  R    LR FD+ +  V+  +++   IN+     + E+ K S++ +       RI +H      D V++  GR+P
Sbjct:   37 GGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDT--KFSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRI---LIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFPPVKGIENTISSDEFFNIKE-SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEH-----FDHVIYCVGRSP 275          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: GSHR_PLAF7 (Glutathione reductase OS=Plasmodium falciparum (isolate 3D7) GN=GR3 PE=2 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 2.574e-23
Identity = 80/250 (32.00%), Postives = 129/250 (51.60%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLS------------YSAKHILIATGSRAQRAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIK-SEEGVK------RITDHGEEIVADVVLFATGRAP 705
            GGTCV  GCVPKKI+   AS    LE++R YG++   K  F+   L++++   I RLN IY++ LS   V LYEG    +  N +    + GTK +               ++ILIA G++    P+ G E  I+SDE  +++E  K+  ++G GYIAVE  ++ + +G    +  R    LR FD+ +  V+  +++   IN+     + E+ K S++ +       RI +H      D V++  GR+P
Sbjct:   37 GGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDT--KFSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRI---LIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFPPVKGIENTISSDEFFNIKE-SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEH-----FDHVIYCVGRSP 275          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: MERA_BACCE (Mercuric reductase OS=Bacillus cereus GN=merA PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.390e-23
Identity = 78/238 (32.77%), Postives = 121/238 (50.84%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRL-NGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELA--ITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKR----ITDHGEEIVADVVLFATGRAP 705
            GGTCV  GCVP K L+         ++    G       + D   L+++K D +  + N  Y  L+ + G +L +GE K V  N VEV   +G +++  AK  LIATG+ +    IPG +    +TS   L L+++P R  V+G GYI +E   ++  +GS V L+ R E  L+ +D E+   + + L  +GINL    T  E ++ +  +K+    I      I A+ +L ATGR P
Sbjct:  204 GGTCVNVGCVPSKTLLRAGEINHLAKNNPFVGLHTSAS-NVDLAPLVKQKNDLVTEMRNEKYVNLIDDYGFELIKGESKFVNENTVEV---NGNQIT--AKRFLIATGASSTAPNIPGLDEVDYLTSTSLLELKKVPNRLTVIGSGYIGMELGQLFHNLGSEVTLIQRSERLLKEYDPEISEAITKALTEQGINLVTGATY-ERVEQDGDIKKVHVEINGKKRIIEAEQLLIATGRKP 434          
The following BLAST results are available for this feature:
BLAST of CX295016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
DLDH_PEA2.105e-2532.64Dihydrolipoyl dehydrogenase, mitochondrial OS=Pisu... [more]
TRXR2_BOVIN1.045e-2432.22Thioredoxin reductase 2, mitochondrial OS=Bos taur... [more]
DLDH_DICDI2.328e-2430.83Dihydrolipoyl dehydrogenase, mitochondrial OS=Dict... [more]
TRXR2_DROME1.509e-2330.67Thioredoxin reductase 2, mitochondrial OS=Drosophi... [more]
TRXR1_CAEEL1.509e-2333.33Thioredoxin reductase 1 OS=Caenorhabditis elegans ... [more]
TRXR_PLAF51.971e-2333.89Thioredoxin reductase OS=Plasmodium falciparum (is... [more]
TRXR2_PLAF71.971e-2333.89Thioredoxin reductase 2 OS=Plasmodium falciparum (... [more]
GSHR_PLAFK2.574e-2332.00Glutathione reductase OS=Plasmodium falciparum (is... [more]
GSHR_PLAF72.574e-2332.00Glutathione reductase OS=Plasmodium falciparum (is... [more]
MERA_BACCE4.390e-2332.77Mercuric reductase OS=Bacillus cereus GN=merA PE=1... [more]

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Properties
Property NameValue
Genbank descriptionC05065F09SK DroRLeaf1 Citrus clementina cDNA clone C05065F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295016 ID=CX295016; Name=CX295016; organism=Citrus clementina; type=EST; length=706bp
GATTCGGCCGAGGGTGGAACCTGTGTCATTCGTGGTTGTGTACCCAAAAA
GATATTGGTCTATGGAGCATCATTTGGAGGTGAACTTGAGGATGCAAGGA
GTTATGGATGGGAGGTACACGAGAAAATTGACTTCGACTGGAAAAAACTT
CTGCAAAAGAAGACAGATGAGATACTCAGATTAAATGGAATTTACAAGCG
ATTATTATCTAATGCTGGGGTAAAATTATATGAAGGGGAGGGAAAGATAG
TTGGTCCAAATGAAGTTGAGGTCACACAACTAGATGGCACTAAGTTAAGT
TACTCAGCAAAGCACATATTGATCGCAACTGGAAGTAGGGCTCAACGTGC
TCCTATTCCTGGCCAGGAGCTGGCTATAACCTCTGACGAGGCATTGAGCT
TGGAAGAATTACCCAAGCGTGCTGTGGTGCTTGGTGGAGGGTACATTGCT
GTTGAGTTTGCTTCCATATGGCGAGGGATGGGTTCTACTGTGGATCTATT
ATTTAGAAAGGAACTTCCATTAAGAGGGTTTGATGATGAAATGCGGGCAG
TAGTTGCCAGAAATCTGGAAGGGAGGGGAATTAATTTGCACCCGAGGACT
ACCATAAAGGAGTTGATTAAGTCAGAGGAGGGTGTAAAACGTATTACAGA
TCATGGTGAAGAGATTGTTGCAGATGTTGTACTCTTTGCCACTGGCAGGG
CACCTA
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