CX295016

Overview
NameCX295016
Unique NameCX295016
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10777 contig Ccv1_Contig10777:354..1059. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: DLDH_HUMAN (Dihydrolipoyl dehydrogenase, mitochondrial OS=Homo sapiens GN=DLD PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.339e-22
Identity = 76/244 (31.15%), Postives = 118/244 (48.36%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFG--GELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG----QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLL-FRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRIT------DHGEEIVADVVLFATGRAP 705
            GGTC+  GC+P K L+  + +      +D  S G E+ E +  +  K++++K+  +  L G    L     V    G GKI G N+V  T+ DG       K+ILIATGS     P PG    ++  ++S  ALSL+++P++ VV+G G I VE  S+W+ +G+ V  + F   +   G D E+     R L+ +G      T +    K  +G   ++         E I  DV+L   GR P
Sbjct:   77 GGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSE-VRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEV--TPFPGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRP 317          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: DLDH_HALVO (Dihydrolipoyl dehydrogenase OS=Halobacterium volcanii GN=lpdA PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.339e-22
Identity = 77/242 (31.82%), Postives = 125/242 (51.65%), Query Frame = 1
Query:    7 AEGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVT---QLDGTKLSYSAKHILIATGSRAQRAP--IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG--VKRITDHGE--EIVADVVLFATGRAP 705
            A GGTC+  GC+P K L+ GA+   E  +A   G  +H     D  +L   K+  + +L G  ++L    GV L EG  +    N V +    +  G++ +   +H +IATGSR  + P    G E   +S +AL  + +P+R VV+GGGYI +E ++ +  +G+ V ++   +  L G++ ++  VV +  E  GI++H         + ++G  V   T+ GE  E  AD VL A GR+P
Sbjct:   42 AYGGTCLNYGCIPSKALITGANLAHEAGNAEEMG--IHADPVVDMSQLRDWKSGVVDQLTGGVEKLCKANGVNLVEGTARFKDENAVRIAHGGEGQGSE-TIEFEHCIIATGSRVIQIPGFDFGDEPVWSSRDALEADTVPERLVVVGGGYIGMELSTTFAKLGADVTVVEMLDDILPGYESDVARVVRKRAEELGIDMHLGEGATGWREEDDGIMVTTETEDGEENEYRADKVLVAVGRSP 280          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: DLDH_ZYMMO (Dihydrolipoyl dehydrogenase OS=Zymomonas mobilis GN=lpd PE=3 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 8.279e-22
Identity = 68/211 (32.23%), Postives = 111/211 (52.61%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP---IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGV 636
            GG C+  GC+P K L+  A    E+++A +YG     K DFD  K++ +  +   RL    K LL    V++  G G++ G  ++ V   +G +    AK I+IATG+RA++ P     G+ +  T   AL    +PK+ +V+G G I +EFAS +   G+ V ++      L   D E+ A VA+  + RGI +  ++ ++ L   +EGV
Sbjct:   39 GGICLNWGCIPTKSLLRSAEVYHEMQNAEAYGLTSF-KPDFDLDKIIARSREVATRLASGVKTLLRKNKVEVISGVGQLTGNQQMLVETTEGEEKILEAKDIIIATGARARQLPNVHSDGKHIW-TYHHALKPPAMPKKLLVIGSGAIGIEFASFYADFGAEVSIVEHAPQILPMEDAEVSAYVAKAFKKRGIRILTQSALQNLTPDDEGV 247          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: DLDH_STAAW (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain MW2) GN=pdhD PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.081e-21
Identity = 72/235 (30.64%), Postives = 122/235 (51.91%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP-IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRITD-HGEE--IVADVVLFATGRAP 705
            GG C+  GC+P K L++ +    E + + + G  + E +  +++K+ + K+  + +L G  + LL    V + +GE   V  N + V   + +  +Y+ K+ +IATGSR    P     +  I S  AL+L+E+P + VV+GGGYI  E  + +   GS V +L   +  L GF+ +M   V + ++ +G+ +      K   +++ GVK   +  GEE  I AD VL   GR P
Sbjct:   44 GGVCLNVGCIPSKALLHASHRFVEAQHSENLG-VIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAYFVDNNSLRVMD-EKSAQTYNFKNAIIATGSRPIEIPNFKFGKRVIDSTGALNLQEVPGKLVVVGGGYIGSELGTAFANFGSEVTILEGAKDILGGFEKQMTQPVKKGMKEKGVEIVTEAMAKSAEETDNGVKVTYEAKGEEKTIEADYVLVTVGRRP 276          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: DLDH_STAAU (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus GN=pdhD PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.081e-21
Identity = 72/235 (30.64%), Postives = 122/235 (51.91%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP-IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRITD-HGEE--IVADVVLFATGRAP 705
            GG C+  GC+P K L++ +    E + + + G  + E +  +++K+ + K+  + +L G  + LL    V + +GE   V  N + V   + +  +Y+ K+ +IATGSR    P     +  I S  AL+L+E+P + VV+GGGYI  E  + +   GS V +L   +  L GF+ +M   V + ++ +G+ +      K   +++ GVK   +  GEE  I AD VL   GR P
Sbjct:   44 GGVCLNVGCIPSKALLHASHRFVEAQHSENLG-VIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAYFVDNNSLRVMD-EKSAQTYNFKNAIIATGSRPIEIPNFKFGKRVIDSTGALNLQEVPGKLVVVGGGYIGSELGTAFANFGSEVTILEGAKDILGGFEKQMTQPVKKGMKEKGVEIVTEAMAKSAEETDNGVKVTYEAKGEEKTIEADYVLVTVGRRP 276          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: DLDH_STAAS (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain MSSA476) GN=pdhD PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.081e-21
Identity = 72/235 (30.64%), Postives = 122/235 (51.91%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP-IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRITD-HGEE--IVADVVLFATGRAP 705
            GG C+  GC+P K L++ +    E + + + G  + E +  +++K+ + K+  + +L G  + LL    V + +GE   V  N + V   + +  +Y+ K+ +IATGSR    P     +  I S  AL+L+E+P + VV+GGGYI  E  + +   GS V +L   +  L GF+ +M   V + ++ +G+ +      K   +++ GVK   +  GEE  I AD VL   GR P
Sbjct:   44 GGVCLNVGCIPSKALLHASHRFVEAQHSENLG-VIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAYFVDNNSLRVMD-EKSAQTYNFKNAIIATGSRPIEIPNFKFGKRVIDSTGALNLQEVPGKLVVVGGGYIGSELGTAFANFGSEVTILEGAKDILGGFEKQMTQPVKKGMKEKGVEIVTEAMAKSAEETDNGVKVTYEAKGEEKTIEADYVLVTVGRRP 276          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: DLDH_STAAR (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain MRSA252) GN=pdhD PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.081e-21
Identity = 72/235 (30.64%), Postives = 122/235 (51.91%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP-IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRITD-HGEE--IVADVVLFATGRAP 705
            GG C+  GC+P K L++ +    E + + + G  + E +  +++K+ + K+  + +L G  + LL    V + +GE   V  N + V   + +  +Y+ K+ +IATGSR    P     +  I S  AL+L+E+P + VV+GGGYI  E  + +   GS V +L   +  L GF+ +M   V + ++ +G+ +      K   +++ GVK   +  GEE  I AD VL   GR P
Sbjct:   44 GGVCLNVGCIPSKALLHASHRFVEAQHSENLG-VIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAYFVDNNSLRVMD-EKSAQTYNFKNAIIATGSRPIEIPNFKFGKRVIDSTGALNLQEVPGKLVVVGGGYIGSELGTAFANFGSEVTILEGAKDILGGFEKQMTQPVKKGMKEKGVEIVTEAMAKSAEETDNGVKVTYEAKGEEKTIEADYVLVTVGRRP 276          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: DLDH_STAAN (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain N315) GN=pdhD PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.081e-21
Identity = 72/235 (30.64%), Postives = 122/235 (51.91%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP-IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRITD-HGEE--IVADVVLFATGRAP 705
            GG C+  GC+P K L++ +    E + + + G  + E +  +++K+ + K+  + +L G  + LL    V + +GE   V  N + V   + +  +Y+ K+ +IATGSR    P     +  I S  AL+L+E+P + VV+GGGYI  E  + +   GS V +L   +  L GF+ +M   V + ++ +G+ +      K   +++ GVK   +  GEE  I AD VL   GR P
Sbjct:   44 GGVCLNVGCIPSKALLHASHRFVEAQHSENLG-VIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAYFVDNNSLRVMD-EKSAQTYNFKNAIIATGSRPIEIPNFKFGKRVIDSTGALNLQEVPGKLVVVGGGYIGSELGTAFANFGSEVTILEGAKDILGGFEKQMTQPVKKGMKEKGVEIVTEAMAKSAEETDNGVKVTYEAKGEEKTIEADYVLVTVGRRP 276          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: DLDH_STAAM (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pdhD PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.081e-21
Identity = 72/235 (30.64%), Postives = 122/235 (51.91%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP-IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRITD-HGEE--IVADVVLFATGRAP 705
            GG C+  GC+P K L++ +    E + + + G  + E +  +++K+ + K+  + +L G  + LL    V + +GE   V  N + V   + +  +Y+ K+ +IATGSR    P     +  I S  AL+L+E+P + VV+GGGYI  E  + +   GS V +L   +  L GF+ +M   V + ++ +G+ +      K   +++ GVK   +  GEE  I AD VL   GR P
Sbjct:   44 GGVCLNVGCIPSKALLHASHRFVEAQHSENLG-VIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAYFVDNNSLRVMD-EKSAQTYNFKNAIIATGSRPIEIPNFKFGKRVIDSTGALNLQEVPGKLVVVGGGYIGSELGTAFANFGSEVTILEGAKDILGGFEKQMTQPVKKGMKEKGVEIVTEAMAKSAEETDNGVKVTYEAKGEEKTIEADYVLVTVGRRP 276          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: DLDH_STAAC (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain COL) GN=pdhD PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.081e-21
Identity = 72/235 (30.64%), Postives = 122/235 (51.91%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP-IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRITD-HGEE--IVADVVLFATGRAP 705
            GG C+  GC+P K L++ +    E + + + G  + E +  +++K+ + K+  + +L G  + LL    V + +GE   V  N + V   + +  +Y+ K+ +IATGSR    P     +  I S  AL+L+E+P + VV+GGGYI  E  + +   GS V +L   +  L GF+ +M   V + ++ +G+ +      K   +++ GVK   +  GEE  I AD VL   GR P
Sbjct:   44 GGVCLNVGCIPSKALLHASHRFVEAQHSENLG-VIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAYFVDNNSLRVMD-EKSAQTYNFKNAIIATGSRPIEIPNFKFGKRVIDSTGALNLQEVPGKLVVVGGGYIGSELGTAFANFGSEVTILEGAKDILGGFEKQMTQPVKKGMKEKGVEIVTEAMAKSAEETDNGVKVTYEAKGEEKTIEADYVLVTVGRRP 276          
The following BLAST results are available for this feature:
BLAST of CX295016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
DLDH_HUMAN6.339e-2231.15Dihydrolipoyl dehydrogenase, mitochondrial OS=Homo... [more]
DLDH_HALVO6.339e-2231.82Dihydrolipoyl dehydrogenase OS=Halobacterium volca... [more]
DLDH_ZYMMO8.279e-2232.23Dihydrolipoyl dehydrogenase OS=Zymomonas mobilis G... [more]
DLDH_STAAW1.081e-2130.64Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH_STAAU1.081e-2130.64Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH_STAAS1.081e-2130.64Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH_STAAR1.081e-2130.64Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH_STAAN1.081e-2130.64Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH_STAAM1.081e-2130.64Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH_STAAC1.081e-2130.64Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]

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Properties
Property NameValue
Genbank descriptionC05065F09SK DroRLeaf1 Citrus clementina cDNA clone C05065F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295016 ID=CX295016; Name=CX295016; organism=Citrus clementina; type=EST; length=706bp
GATTCGGCCGAGGGTGGAACCTGTGTCATTCGTGGTTGTGTACCCAAAAA
GATATTGGTCTATGGAGCATCATTTGGAGGTGAACTTGAGGATGCAAGGA
GTTATGGATGGGAGGTACACGAGAAAATTGACTTCGACTGGAAAAAACTT
CTGCAAAAGAAGACAGATGAGATACTCAGATTAAATGGAATTTACAAGCG
ATTATTATCTAATGCTGGGGTAAAATTATATGAAGGGGAGGGAAAGATAG
TTGGTCCAAATGAAGTTGAGGTCACACAACTAGATGGCACTAAGTTAAGT
TACTCAGCAAAGCACATATTGATCGCAACTGGAAGTAGGGCTCAACGTGC
TCCTATTCCTGGCCAGGAGCTGGCTATAACCTCTGACGAGGCATTGAGCT
TGGAAGAATTACCCAAGCGTGCTGTGGTGCTTGGTGGAGGGTACATTGCT
GTTGAGTTTGCTTCCATATGGCGAGGGATGGGTTCTACTGTGGATCTATT
ATTTAGAAAGGAACTTCCATTAAGAGGGTTTGATGATGAAATGCGGGCAG
TAGTTGCCAGAAATCTGGAAGGGAGGGGAATTAATTTGCACCCGAGGACT
ACCATAAAGGAGTTGATTAAGTCAGAGGAGGGTGTAAAACGTATTACAGA
TCATGGTGAAGAGATTGTTGCAGATGTTGTACTCTTTGCCACTGGCAGGG
CACCTA
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