CX295017

Overview
NameCX295017
Unique NameCX295017
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295017 vs. ExPASy Swiss-Prot
Match: ARP3_ACACA (Actin-related protein 3 OS=Acanthamoeba castellanii GN=ARP3 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.589e-41
Identity = 87/211 (41.23%), Postives = 122/211 (57.82%), Query Frame = 1
Query:  133 LVCDNGTGMVKAGFAGDDAPRAVFPSIVG----------RPRHTGVMVGMGQK----DAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTER 699
            +V DNGTG  K G+AG+  P+ + P+ +           R R        G+     D ++GDEA     +  +  P+ HG V NW  ME+ W H  +  LR  PE+H  LLTE PLN   NRE   +IMFETFNVP +Y+A+QAVL+L AS  +        TG V+DSGDGV+H +P+ EGY +  +I  + LAGRD+T+ ++++L ER
Sbjct:    9 VVIDNGTGYTKMGYAGNTEPQYIIPTAIATKGIAEDPRCRARRWWCPWAAGKNIADLDFFIGDEAYENSKVYQITMPVRHGQVENWTHMEQFWEHCIFKYLRCEPEDHHFLLTEPPLNAPENREYTAEIMFETFNVPGLYIAVQAVLALAASWTSKQVTEKTLTGTVIDSGDGVTHVIPVAEGYVIGSSIKHIPLAGRDITNFVLQLLRER 219          
BLAST of CX295017 vs. ExPASy Swiss-Prot
Match: ACL7B_MACFA (Actin-like protein 7B OS=Macaca fascicularis GN=ACTL7B PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.589e-41
Identity = 84/196 (42.86%), Postives = 123/196 (62.76%), Query Frame = 1
Query:  124 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMF 711
            I+ +V D G+   K G+AG+  P     S VG+        G  +K   VG E  +    L L  P++HGIV +WD ++ IW + F   +++ PEEH VL+++ PL+P +NREK  ++MF TF +PAM+V  Q++LS+Y+ G+T+G+V++SG GVSH VPI EG  LP    R D AG DLT+ LM++L E G+ F
Sbjct:   49 IKAVVIDLGSQYCKCGYAGEPRPTYFISSTVGKRCPEAADAGDTRKGTLVGHELLNTETPLKLVNPLKHGIVVDWDCVQDIWEYIFRTAMKILPEEHAVLVSDPPLSPSSNREKYAELMFGTFGIPAMHVTSQSLLSIYSYGKTSGLVVESGHGVSHVVPISEGDVLPGLTSRADYAGGDLTNYLMQLLNEAGHAF 244          
BLAST of CX295017 vs. ExPASy Swiss-Prot
Match: ACTL9_RAT (Actin-like protein 9 OS=Rattus norvegicus GN=Actl9 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.121e-41
Identity = 81/182 (44.51%), Postives = 121/182 (66.48%), Query Frame = 1
Query:  133 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDAL 678
            +V D GTG+ K GFAG   P  +  +IVG        +   + + ++G+ A + R  LTL +P+ +GIV +W+  E IW H   N+LR+  ++HP+L T+ P NP +NREK+ ++ FE+ + PA+YVA Q+VLS+YA+GR  G+V+D+G GVS+TVP+++GY LP  I R+DLAG  LT  L
Sbjct:   47 VVIDMGTGICKMGFAGQTRPTYIVRNIVGCQPKRRTTMEQPKMEMFIGEAAHA-RPELTLMHPVRNGIVVDWEAAEFIWRHILENDLRLDTQDHPLLFTDPPFNPASNREKLVEVAFESLHSPAIYVASQSVLSVYANGRVNGLVVDTGHGVSYTVPVFQGYNLPSGIQRMDLAGHYLTKFL 227          
BLAST of CX295017 vs. ExPASy Swiss-Prot
Match: ARP3_CAEBR (Actin-related protein 3 OS=Caenorhabditis briggsae GN=arx-1 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.995e-41
Identity = 89/210 (42.38%), Postives = 123/210 (58.57%), Query Frame = 1
Query:  136 VCDNGTGMVKAGFAGDDAPRAVFPSIVG-------------RPRHTGVMVGMGQKDAYVGDEAQSKRGI-LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTER 699
            V DNGTG  K G+AG+  P+ + PS +              R  +     G+   D ++GDEA S      T+KYPI HGIV +WD ME+ W    +  LR  PE+H  LLTE PLN   NRE   +IMFE+FNVP +Y+A+QAVL+L AS ++        TG+V+DSGDGV+H +P+ +GY +   I  + +AGRD+T  +  +L ER
Sbjct:   10 VIDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVASSNAQALRWNNRVGGAGIDDLDFFIGDEALSPAASNYTVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDHFFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALTASWQSREASDRSLTGLVIDSGDGVTHCIPVADGYVIGSCIKHIPIAGRDITYFIQNLLRER 219          
BLAST of CX295017 vs. ExPASy Swiss-Prot
Match: ARP3_SCHPO (Actin-related protein 3 OS=Schizosaccharomyces pombe GN=act2 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.044e-40
Identity = 91/222 (40.99%), Postives = 126/222 (56.76%), Query Frame = 1
Query:  130 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVG---------MGQK--------------DAYVGDEAQSKRGI-LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTER 699
            P++ DNGTG  K G+AG+DAP  VFP+++   R  G   G         M  K              D ++G++A  K     +L YPI HG + NWD ME+ W  + +  LR  PE+H  LLTE PLNP  NRE   +IMFE+FN   +Y+A+QAVL+L AS  +        TG V+DSGDGV+H +P+ EGY +  +I  + LAGRD+T  +  +L +R
Sbjct:    7 PIIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSKRATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDR 227          
BLAST of CX295017 vs. ExPASy Swiss-Prot
Match: ARP3B_MOUSE (Actin-related protein 3B OS=Mus musculus GN=Actr3b PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.364e-40
Identity = 89/211 (42.18%), Postives = 124/211 (58.77%), Query Frame = 1
Query:  115 AEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVG--------RPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTER 699
            A  + P V D GTG  K G+AG+  P+ + PS +               V+ G+   D ++GDEA  K    T K+PI HGIV +WD ME+      +  LR  PE+H  L+TE PLN   NRE + +IMFE+FNVP +Y+A+QAVL+L AS  +        TGIV+DSGDGV+H +P+ EGY +   I  + +AGRD+T  + ++L ER
Sbjct:    2 AGSLPPCVVDCGTGYTKLGYAGNTEPQFIIPSCIAIRESAKVVDQAQRRVLRGVDDLDFFIGDEAIDKPTYAT-KWPIRHGIVEDWDLMERFMEQVVFKYLRAEPEDHYFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRER 211          
BLAST of CX295017 vs. ExPASy Swiss-Prot
Match: ARP3_NEUCR (Actin-related protein 3 OS=Neurospora crassa GN=arp-3 PE=2 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.781e-40
Identity = 92/230 (40.00%), Postives = 125/230 (54.35%), Query Frame = 1
Query:  133 LVCDNGTGMVKAGFAGDDAPRAVFPSIV--------------GRPR----------------HTGVMVGMGQKDAYVGDEAQSKRGI--LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERG 702
            +V DNGTG  K GFAG+D+P  VFP+ +              GRP                 H     G    D ++GDEA +        L YPI HG + NWD ME+ W ++ +  LRV PE+H  LLTE PLNP  NRE   +I FE+FN   +Y+A+QAVL+L AS  +        TG V+DSGDGV+H +P+ EGY +  +I  + +AGRD+T  +  +L +RG
Sbjct:    8 VVMDNGTGFSKLGFAGNDSPSFVFPTAIATKSPSAGTGGSGSGRPAVANKPSFLTGGAGPGGHLSAKRGTEDLDYFIGDEAVAAANGPGYGLHYPIRHGQIENWDHMERFWSNSIFKYLRVEPEDHHFLLTEPPLNPPENRENTAEIFFESFNCAGLYIAVQAVLALAASWTSSKVQDRSLTGTVIDSGDGVTHVIPVAEGYVIGSSIKSIPIAGRDITYFVQSLLRDRG 237          
BLAST of CX295017 vs. ExPASy Swiss-Prot
Match: ARP3B_HUMAN (Actin-related protein 3B OS=Homo sapiens GN=ACTR3B PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.781e-40
Identity = 88/211 (41.71%), Postives = 124/211 (58.77%), Query Frame = 1
Query:  115 AEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVG--------RPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTER 699
            A  + P V D GTG  K G+AG+  P+ + PS +               V+ G+   D ++GDEA  K    T K+PI HGI+ +WD ME+      +  LR  PE+H  L+TE PLN   NRE + +IMFE+FNVP +Y+A+QAVL+L AS  +        TGIV+DSGDGV+H +P+ EGY +   I  + +AGRD+T  + ++L ER
Sbjct:    2 AGSLPPCVVDCGTGYTKLGYAGNTEPQFIIPSCIAIRESAKVVDQAQRRVLRGVDDLDFFIGDEAIDKPTYAT-KWPIRHGIIEDWDLMERFMEQVVFKYLRAEPEDHYFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRER 211          
BLAST of CX295017 vs. ExPASy Swiss-Prot
Match: ARP3_YEAST (Actin-related protein 3 OS=Saccharomyces cerevisiae GN=ARP3 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.326e-40
Identity = 94/242 (38.84%), Postives = 130/242 (53.72%), Query Frame = 1
Query:  133 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGR--PRHTGVMVGMGQKDA----------------------------------------YVGDEA--QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERG 702
            +V DNGTG+ K GFAG+D+P  VFP+ +    P +T    G+G   A                                        Y+G+EA   S+    +L YPI HG V NWD ME+ W ++ +  LR  PE+H  LLTE PLNP  NRE++ +I FE+FN   +Y+A+QAVL+L AS  +        TG V+DSGDGV+H +P+ EGY +  AI  + +AGRD+T  +  +L ERG
Sbjct:    9 VVMDNGTGLTKLGFAGNDSPSWVFPTAIATAAPSNTKKSSGVGAPSAVSNEASYFGNSTSATNFNGATGGLLSNNLSGKRGTEDLDFYIGNEALVASQGPSYSLSYPIRHGQVENWDHMERFWENSIFKYLRTEPEDHFFLLTEPPLNPPENREQVAEIFFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVIDSGDGVTHVIPVAEGYVIGSAIKNIPIAGRDITLFIQSLLRERG 250          
BLAST of CX295017 vs. ExPASy Swiss-Prot
Match: ARP3_DROME (Actin-related protein 3 OS=Drosophila melanogaster GN=Arp66B PE=1 SV=3)

HSP 1 Score: 164.466 bits (415), Expect = 5.182e-40
Identity = 88/204 (43.14%), Postives = 120/204 (58.82%), Query Frame = 1
Query:  136 VCDNGTGMVKAGFAGDDAPRAVFPSI--------VGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTER 699
            V D GTG  K GFAG+  P+ + PS         VG      +  G+   D ++GDEA    G  ++KYP+ HG+V +WD ME+      +  LR  PE+H  LLTE PLN   NRE   +IMFETFNVP +Y+A+QAVL+L AS  +        TGIV+DSGDGV+H +P+ EGY +   I  + +AGR++T  +  +L ER
Sbjct:    9 VIDVGTGYSKLGFAGNKEPQFIIPSAIAIKESARVGDTNTRRITKGIEDLDFFIGDEAFDATGY-SIKYPVRHGLVEDWDLMERFLEQCVFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFETFNVPGLYIAVQAVLALAASWASRSAEERTLTGIVVDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRNITSFIQSLLRER 211          
The following BLAST results are available for this feature:
BLAST of CX295017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 473
Match NameE-valueIdentityDescription
ARP3_ACACA3.589e-4141.23Actin-related protein 3 OS=Acanthamoeba castellani... [more]
ACL7B_MACFA3.589e-4142.86Actin-like protein 7B OS=Macaca fascicularis GN=AC... [more]
ACTL9_RAT6.121e-4144.51Actin-like protein 9 OS=Rattus norvegicus GN=Actl9... [more]
ARP3_CAEBR7.995e-4142.38Actin-related protein 3 OS=Caenorhabditis briggsae... [more]
ARP3_SCHPO1.044e-4040.99Actin-related protein 3 OS=Schizosaccharomyces pom... [more]
ARP3B_MOUSE1.364e-4042.18Actin-related protein 3B OS=Mus musculus GN=Actr3b... [more]
ARP3_NEUCR1.781e-4040.00Actin-related protein 3 OS=Neurospora crassa GN=ar... [more]
ARP3B_HUMAN1.781e-4041.71Actin-related protein 3B OS=Homo sapiens GN=ACTR3B... [more]
ARP3_YEAST2.326e-4038.84Actin-related protein 3 OS=Saccharomyces cerevisia... [more]
ARP3_DROME5.182e-4043.14Actin-related protein 3 OS=Drosophila melanogaster... [more]

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Properties
Property NameValue
Genbank descriptionC05065F11SK DroRLeaf1 Citrus clementina cDNA clone C05065F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295017 ID=CX295017; Name=CX295017; organism=Citrus clementina; type=EST; length=711bp
GAGGGGCACTCCAAATACAGAGCGATAGAGAGAATCGACACTCTCAGCTA
GACTCCATCTTCGAATTTTTCTCTCGTCGTCTCTTCAATCTAACTTTTAT
AAAAAATGGCCGATGCTGAGGATATTCAACCCCTTGTTTGTGACAATGGA
ACTGGAATGGTGAAGGCTGGATTTGCTGGAGATGATGCTCCAAGGGCAGT
ATTCCCTAGTATTGTTGGTAGGCCTCGACACACTGGAGTCATGGTTGGAA
TGGGGCAGAAGGATGCCTATGTTGGTGATGAGGCCCAATCGAAAAGAGGT
ATTCTTACTTTGAAATACCCAATTGAGCACGGTATTGTAAGCAACTGGGA
TGATATGGAAAAGATCTGGCATCATACCTTCTACAACGAGCTTCGTGTTG
CTCCTGAAGAGCACCCAGTGCTTCTCACTGAGGCACCTCTTAACCCCAAG
GCCAACAGAGAGAAGATGACCCAAATTATGTTTGAAACTTTCAATGTGCC
AGCCATGTACGTTGCCATCCAGGCTGTTCTATCTCTTTATGCCAGTGGTC
GTACAACTGGTATTGTGCTGGATTCTGGTGATGGTGTGTCTCATACTGTA
CCAATTTATGAGGGATATGCCCTTCCTCATGCCATTCTTCGTTTGGACTT
GGCTGGTCGTGATCTCACTGATGCATTGATGAAGATTCTTACTGAGAGAG
GTTACATGTTT
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