CX295017

Overview
NameCX295017
Unique NameCX295017
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295017 vs. ExPASy Swiss-Prot
Match: ARP6_ARATH (Actin-related protein 6 OS=Arabidopsis thaliana GN=ARP6 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.568e-20
Identity = 60/199 (30.15%), Postives = 103/199 (51.76%), Query Frame = 1
Query:  133 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVA-IQAVLSLYASGR---------TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTER 699
            +V DNG G++KAG  G+  P  V P+ + +P  +   +        + DE         ++ PI+ G + N D   +IW H F + L +AP    +LLTEAPL+  + +    +++FE F   ++Y+A  Q+++ LY + R            +V+D G   +H VP+   + L HAI R+DL G+  T+ L ++++ R
Sbjct:    5 VVLDNGGGLIKAGQGGERDPTTVIPNCLYKPLSSKKFIHPSPLTT-LSDEIDLTSA--AVRRPIDRGYLINSDLQREIWSHLFTSLLHIAPSSSSLLLTEAPLSIPSVQRTTDELVFEDFGFSSLYIAHPQSLVHLYEASRQPDSILSKTQCSLVVDCGFSFTHAVPVLHNFTLNHAIKRIDLGGKAFTNYLKELVSYR 200          
BLAST of CX295017 vs. ExPASy Swiss-Prot
Match: ARP6_ORYSJ (Actin-related protein 6 OS=Oryza sativa subsp. japonica GN=ARP6 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.561e-20
Identity = 60/200 (30.00%), Postives = 103/200 (51.50%), Query Frame = 1
Query:  133 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI---LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVA-IQAVLSLYASGR-------TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTER 699
            +V DNG G++KAGF GD  P AV P+ + +P         G K   V D+ Q++      +TL+ PI+ G + N +   ++W     N L+V P    +LL E   NP A +    +++FE     ++ VA   +++ LY + R          +V+D G   +H  P+ + + L +A+ R+DL G+ LT+ L ++++ R
Sbjct:    8 VVLDNGGGLLKAGFGGDMNPTAVVPNCMAKPP--------GSKKWLVADQLQAQDVDVTGMTLRRPIDRGYLINQEVQREVWERVIRNLLQVDPNNSSLLLVEPQFNPPALQHATDELVFEELGFKSLCVADAPSLVHLYEASRQPSLFRAQCSLVVDCGFSFTHASPVLQNFTLNYAVRRMDLGGKALTNYLKELISYR 199          
BLAST of CX295017 vs. ExPASy Swiss-Prot
Match: ARP6_ORYSI (Actin-related protein 6 OS=Oryza sativa subsp. indica GN=ARP6 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.561e-20
Identity = 60/200 (30.00%), Postives = 103/200 (51.50%), Query Frame = 1
Query:  133 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI---LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVA-IQAVLSLYASGR-------TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTER 699
            +V DNG G++KAGF GD  P AV P+ + +P         G K   V D+ Q++      +TL+ PI+ G + N +   ++W     N L+V P    +LL E   NP A +    +++FE     ++ VA   +++ LY + R          +V+D G   +H  P+ + + L +A+ R+DL G+ LT+ L ++++ R
Sbjct:    8 VVLDNGGGLLKAGFGGDMNPTAVVPNCMAKPP--------GSKKWLVADQLQAQDVDVTGMTLRRPIDRGYLINQEVQREVWERVIRNLLQVDPNNSSLLLVEPQFNPPALQHATDELVFEELGFKSLCVADAPSLVHLYEASRQPSLFRAQCSLVVDCGFSFTHASPVLQNFTLNYAVRRMDLGGKALTNYLKELISYR 199          
BLAST of CX295017 vs. ExPASy Swiss-Prot
Match: ARP42_SCHPO (SWI/SNF and RSC complexes subunit arp42 OS=Schizosaccharomyces pombe GN=arp42 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.957e-20
Identity = 53/182 (29.12%), Postives = 97/182 (53.30%), Query Frame = 1
Query:  118 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI--LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 657
            E+I  LV D G+   + G+AG+++P  + PS      + GV   +  ++ YV DE Q    I  + +K    +GI+ +W+     W      +L+V P E+ +++TE   NP++ R+++ +  FE  +VPA Y+  QAV   +A+ ++T +++D G   +   P+ +G  +   I +  LAG
Sbjct:    8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLIIRKGIFKQSLAG 183          
BLAST of CX295017 vs. ExPASy Swiss-Prot
Match: ARP4A_ARATH (Actin-related protein 4A OS=Arabidopsis thaliana GN=ARP4A PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.601e-19
Identity = 49/136 (36.03%), Postives = 76/136 (55.88%), Query Frame = 1
Query:  106 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVG---------------MGQKDAYVGDEAQS-KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 465
            M   +++  +V D G+   KAG+AG+DAP+AVFPS+VG     G+ +                 G++  Y G +A + +R  + +  P + GIV++WD ++ +W H F N L + P EHP+LL E PLN +  REK
Sbjct:    1 MYGGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVVGAIDGNGMDIDDAANTTEDAKESDKEKGKRKLYTGSQALNFRRDQMEILSPTKDGIVTDWDMVDNVWDHAFRNCLMIDPTEHPMLLAEPPLNSQQQREK 136          
BLAST of CX295017 vs. ExPASy Swiss-Prot
Match: ARP4_ASPFU (Actin-related protein 4 OS=Aspergillus fumigatus GN=arp4 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.767e-17
Identity = 60/220 (27.27%), Postives = 100/220 (45.45%), Query Frame = 1
Query:  118 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA-QSKRGILTLKYPI-EHGIVSNWDDMEKIWHHTFYNELR--------------------------VAPEE-----HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDAL 678
            ++I  +V D G    +AGFAG+D P++V P+  G+  +        Q+    GD+   + R  L++  P+   G+V +WD  EK+W ++F + L                           V  EE      P+L+TE   NP   REK  +I  E +  PA Y+A   VL+ +A+G+ + +V+D G       P+++G  L   +    L G  ++  L
Sbjct:    9 DEISAIVLDPGFSTTRAGFAGEDTPKSVIPTYYGKYTYE------AQEKLIFGDDIFVTPRPGLSIHNPMGRDGVVEDWDMAEKVWEYSFTSRLTGPKAGNPFQNGLNDVANGELPSEMEGVETEEKPLADSPLLMTECGWNPTKAREKTVEIAMEKWGTPAFYLARNGVLAAFAAGKASALVVDVGASNISVTPVHDGMILKRGVQHSPLGGDYISSQL 222          
BLAST of CX295017 vs. ExPASy Swiss-Prot
Match: ARP6_NEUCR (Actin-like protein arp-6 OS=Neurospora crassa GN=arp-6 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.373e-16
Identity = 64/214 (29.91%), Postives = 102/214 (47.66%), Query Frame = 1
Query:  133 LVCDNGTGMVKAGFAGDDA----PRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI--LTLKYPIEHGIVSNWDDMEKIWHHTFYNEL---RVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYAS----GRTTGIVLDS--------GDGVSHTV--PIYEGYALPHAILRLDLAGRDLTDALMKILTERGY 705
            LV DNG   +KAGF  DD     PR + P+ + R RH  +         YVG E +  +    L  + P+E G + NW+  ++IW   F+++    +  P +  ++LTE P +  + +    QI+FE +   + Y  +  V + Y       RT    +DS          G SHT   PI +G  L  AI RLD+ G+ +T+ L ++L+ R +
Sbjct:   22 LVLDNGADTIKAGFVSDDKSDGKPR-IIPNCLARDRHRKI---------YVGSELEKCKDFSELAFRRPVEKGFIVNWEAQKEIWDREFFDDKAAQKCDPSDTRLILTEQPNSLPSLQTHCDQIVFEEYGFASYYRGLGPVFNAYRDIQSIFRTPQSTIDSPAQVILLIDSGYSHTTVTPILQGRPLHPAIRRLDVGGKLMTNYLTRLLSVRHF 225          
BLAST of CX295017 vs. ExPASy Swiss-Prot
Match: ARP4_EMENI (Actin-related protein 4 OS=Emericella nidulans GN=arp4 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.793e-16
Identity = 55/213 (25.82%), Postives = 96/213 (45.07%), Query Frame = 1
Query:  118 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA-QSKRGILTLKYPI-EHGIVSNWDDMEKIWHHTFYNELRVAP-------------------------------EEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 657
            +++  +V D G    +AGFAG+D P+++ P+  G+          GQ+    GD+   + R  L++  P+   G+V +WD  EK+W ++F + L  A                                 + P+L++E   NP   REK  +I  E +  PA Y+A   VL+ +A+G+ + +V+D G       P+++G  L   +    L G
Sbjct:   15 DEVSAIVLDPGFSTTRAGFAGEDTPKSLVPTYYGKYSFE------GQEKLIFGDDVFVTPRPSLSVGNPMGRDGVVEDWDMAEKLWEYSFTSRLTGAKPSNPLHNGLNDLVEGELPTEMEGVETNEKPLADSPLLMSECSWNPTKAREKTIEIAMEKWGTPAFYLARNGVLASFAAGKASALVVDIGASNISVTPVHDGMVLKRGVQHSPLGG 221          
BLAST of CX295017 vs. ExPASy Swiss-Prot
Match: ARP4_KLULA (Actin-related protein 4 OS=Kluyveromyces lactis GN=ARP4 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.059e-16
Identity = 54/195 (27.69%), Postives = 94/195 (48.21%), Query Frame = 1
Query:  118 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEH-PVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTER 699
            ++I  +V D G+ +   G++G D P+++ PS  G     G       K  +        R  + +K  +E+  + +WD  ++ W +    +L+    +  PVLLTE   N +A+R+K  +I+ E+    A Y+A  +    +A GR T +V+D G  VS   P+ +G  L  +  R  +AG+ L   + K L  R
Sbjct:   12 DEINAIVIDPGSFVTNIGYSGTDCPQSIMPSSYGNVETDG-----DTKRIFNEQPLLFPRAGMEIKPIVENSTIVDWDRAQEQWEYALNTDLKFESNKGTPVLLTEPIWNSEASRKKSLEILLESMEFEACYLAANSSAVSFAMGRPTCLVVDIGHDVSTVSPVIDGMTLSKSSTRNYVAGKYLNHLIAKNLKPR 201          
BLAST of CX295017 vs. ExPASy Swiss-Prot
Match: ARP4_ASHGO (Actin-related protein 4 OS=Ashbya gossypii GN=ARP4 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.059e-16
Identity = 55/196 (28.06%), Postives = 94/196 (47.96%), Query Frame = 1
Query:  118 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS-KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEH-PVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTER 699
            ++I  +V D G+     G++G D P+A+ PS  G+          G+KD    +++    R    +   +++G V +W+  EK W     +ELR       P LLTE   N + NR+K  +++ E+ +  A Y+   A    +A GR T +V+D G  V+   P+ +G  L  + +R  +AG  L + +   L  R
Sbjct:   12 DEITAVVIDPGSFTTNIGYSGTDCPQAILPSCYGKYTE-------GEKDELFSEQSIGLPRKDYEIHNIVQNGEVVDWEKAEKQWDWAIRSELRFETNSGMPALLTEPIWNSEENRKKSLEVLLESMDFSACYLVPTATAVSFAMGRPTCLVVDIGHDVTSVCPVVDGMTLSKSSMRSYIAGSLLNELIRSQLAPR 200          
The following BLAST results are available for this feature:
BLAST of CX295017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 473
Match NameE-valueIdentityDescription
ARP6_ARATH1.568e-2030.15Actin-related protein 6 OS=Arabidopsis thaliana GN... [more]
ARP6_ORYSJ4.561e-2030.00Actin-related protein 6 OS=Oryza sativa subsp. jap... [more]
ARP6_ORYSI4.561e-2030.00Actin-related protein 6 OS=Oryza sativa subsp. ind... [more]
ARP42_SCHPO5.957e-2029.12SWI/SNF and RSC complexes subunit arp42 OS=Schizos... [more]
ARP4A_ARATH8.601e-1936.03Actin-related protein 4A OS=Arabidopsis thaliana G... [more]
ARP4_ASPFU2.767e-1727.27Actin-related protein 4 OS=Aspergillus fumigatus G... [more]
ARP6_NEUCR1.373e-1629.91Actin-like protein arp-6 OS=Neurospora crassa GN=a... [more]
ARP4_EMENI1.793e-1625.82Actin-related protein 4 OS=Emericella nidulans GN=... [more]
ARP4_KLULA3.059e-1627.69Actin-related protein 4 OS=Kluyveromyces lactis GN... [more]
ARP4_ASHGO3.059e-1628.06Actin-related protein 4 OS=Ashbya gossypii GN=ARP4... [more]

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Properties
Property NameValue
Genbank descriptionC05065F11SK DroRLeaf1 Citrus clementina cDNA clone C05065F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295017 ID=CX295017; Name=CX295017; organism=Citrus clementina; type=EST; length=711bp
GAGGGGCACTCCAAATACAGAGCGATAGAGAGAATCGACACTCTCAGCTA
GACTCCATCTTCGAATTTTTCTCTCGTCGTCTCTTCAATCTAACTTTTAT
AAAAAATGGCCGATGCTGAGGATATTCAACCCCTTGTTTGTGACAATGGA
ACTGGAATGGTGAAGGCTGGATTTGCTGGAGATGATGCTCCAAGGGCAGT
ATTCCCTAGTATTGTTGGTAGGCCTCGACACACTGGAGTCATGGTTGGAA
TGGGGCAGAAGGATGCCTATGTTGGTGATGAGGCCCAATCGAAAAGAGGT
ATTCTTACTTTGAAATACCCAATTGAGCACGGTATTGTAAGCAACTGGGA
TGATATGGAAAAGATCTGGCATCATACCTTCTACAACGAGCTTCGTGTTG
CTCCTGAAGAGCACCCAGTGCTTCTCACTGAGGCACCTCTTAACCCCAAG
GCCAACAGAGAGAAGATGACCCAAATTATGTTTGAAACTTTCAATGTGCC
AGCCATGTACGTTGCCATCCAGGCTGTTCTATCTCTTTATGCCAGTGGTC
GTACAACTGGTATTGTGCTGGATTCTGGTGATGGTGTGTCTCATACTGTA
CCAATTTATGAGGGATATGCCCTTCCTCATGCCATTCTTCGTTTGGACTT
GGCTGGTCGTGATCTCACTGATGCATTGATGAAGATTCTTACTGAGAGAG
GTTACATGTTT
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