CX295017

Overview
NameCX295017
Unique NameCX295017
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295017 vs. ExPASy Swiss-Prot
Match: ARP6_ASPFU (Actin-like protein arp6 OS=Aspergillus fumigatus GN=arp6 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.500e-12
Identity = 61/240 (25.42%), Postives = 109/240 (45.42%), Query Frame = 1
Query:  109 ADAEDIQPL-----VCDNGTGMVKAGFAGDDAPR----------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRV--------APEEHPVLLTEAPLNPKANREKMTQIMFETFN-------VPAMYVAIQAVLSLYA-----------SGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGY 705
            A A  +Q L     + DNG   +KAG+A    P           +  P+ + + R   + +G  Q ++ V D  +     +  + P+E G + NW+  ++IW + F++E  V        +PE+  ++LTEAP      ++   +I+ E +        V  +  A   V SL+            S +   +V+DSG   +   P+Y+G  +  AI RLD+ G+ LT+ L ++++ R Y
Sbjct:   12 ASAPKVQSLPEKTFIIDNGAYTLKAGYAPGFPPPEDLGQALSACSTIPNAIAKTRGNRIYIG-AQLNSQVTDWNE-----MVFRRPVEKGYIVNWEAQKEIWDNAFFDEKTVRSKDLRIESPEDTTLVLTEAPNALPTLQKNADEIVMEEWGFGGYVRFVGPVLNAWNEVQSLFGDPIGQDSSSPISPKQCLLVVDSGYSHTTVTPVYKGQPIQRAIRRLDIGGKHLTNYLKEMVSMRQY 245          
BLAST of CX295017 vs. ExPASy Swiss-Prot
Match: ARP5_DROME (Actin-related protein 5 OS=Drosophila melanogaster GN=Arp5 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.970e-12
Identity = 46/206 (22.33%), Postives = 96/206 (46.60%), Query Frame = 1
Query:  133 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR-----HTGVMVGMGQK-------DAYVGDEAQSKRGILT-LKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLS-----LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKIL 690
            LV DNG+   + G++    P   F +++ +PR           G   +       +  VG++  +   +   LK P E  +++NW+  E+I+ + F        +  +HP++LTEA  NP   R++M +++FE + +P++   I A+ S           +  +++  G   +H +P+ +G      + RL++ G  +   L +++
Sbjct:    7 LVIDNGSYECRVGWSDSKEPDLRFRNVLTKPRKDRKKEAAASEGSASQTTVEQSAEIQVGNDITNIEAVRAHLKSPFERNVITNWNHQEQIFDYIFTKMGFDGQDKIDHPIILTEALANPNFCRQQMNELLFECYGIPSVSYGIDALYSWKHHQQKQKNISDALIISFGYSTTHVIPVLDGKLQLEHVRRLNVGGYHIITYLFRLM 212          
BLAST of CX295017 vs. ExPASy Swiss-Prot
Match: ARP5_DROPS (Actin-related protein 5 OS=Drosophila pseudoobscura pseudoobscura GN=Arp5 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.054e-11
Identity = 50/209 (23.92%), Postives = 100/209 (47.85%), Query Frame = 1
Query:  133 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHT-----------GVMVGMGQK---DAYVGDEAQSKRGILT-LKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEE---HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSL--YASGR---TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKIL 690
            LV DNG+   + G+     P   F +++ +PR             G    +  +   +  VG++  +   +   LK P E  I++NW+  E+I+ + F  ++    E+   +P++LTEA  NP   R+ M++++FE + +PA+   I A+ S   Y + R   +  +++  G   +H +P+  G      + RL++ G  +   L+ ++
Sbjct:    8 LVIDNGSYECRVGWNNTKEPALRFRNVLTKPRKDRKKEAIPDTTDGAPTPVAAEVPAEIQVGNDITNIEAVRAHLKSPFERNIITNWNHQEQIFDYIF-TKMGFEGEQSIANPIVLTEALANPNFCRQNMSELLFECYGIPAVSYGIDALYSWEHYQNRRKKVSDALIISLGYSTTHVIPVLNGKLQLQHVRRLNVGGYHIITYLLCLM 215          
The following BLAST results are available for this feature:
BLAST of CX295017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 473
Match NameE-valueIdentityDescription
ARP6_ASPFU3.500e-1225.42Actin-like protein arp6 OS=Aspergillus fumigatus G... [more]
ARP5_DROME5.970e-1222.33Actin-related protein 5 OS=Drosophila melanogaster... [more]
ARP5_DROPS5.054e-1123.92Actin-related protein 5 OS=Drosophila pseudoobscur... [more]

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Properties
Property NameValue
Genbank descriptionC05065F11SK DroRLeaf1 Citrus clementina cDNA clone C05065F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295017 ID=CX295017; Name=CX295017; organism=Citrus clementina; type=EST; length=711bp
GAGGGGCACTCCAAATACAGAGCGATAGAGAGAATCGACACTCTCAGCTA
GACTCCATCTTCGAATTTTTCTCTCGTCGTCTCTTCAATCTAACTTTTAT
AAAAAATGGCCGATGCTGAGGATATTCAACCCCTTGTTTGTGACAATGGA
ACTGGAATGGTGAAGGCTGGATTTGCTGGAGATGATGCTCCAAGGGCAGT
ATTCCCTAGTATTGTTGGTAGGCCTCGACACACTGGAGTCATGGTTGGAA
TGGGGCAGAAGGATGCCTATGTTGGTGATGAGGCCCAATCGAAAAGAGGT
ATTCTTACTTTGAAATACCCAATTGAGCACGGTATTGTAAGCAACTGGGA
TGATATGGAAAAGATCTGGCATCATACCTTCTACAACGAGCTTCGTGTTG
CTCCTGAAGAGCACCCAGTGCTTCTCACTGAGGCACCTCTTAACCCCAAG
GCCAACAGAGAGAAGATGACCCAAATTATGTTTGAAACTTTCAATGTGCC
AGCCATGTACGTTGCCATCCAGGCTGTTCTATCTCTTTATGCCAGTGGTC
GTACAACTGGTATTGTGCTGGATTCTGGTGATGGTGTGTCTCATACTGTA
CCAATTTATGAGGGATATGCCCTTCCTCATGCCATTCTTCGTTTGGACTT
GGCTGGTCGTGATCTCACTGATGCATTGATGAAGATTCTTACTGAGAGAG
GTTACATGTTT
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