CX295021

Overview
NameCX295021
Unique NameCX295021
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX295021 vs. ExPASy Swiss-Prot
Match: RFA1_CRIFA (Replication factor A 51 kDa subunit OS=Crithidia fasciculata GN=RPA1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.305e-12
Identity = 39/95 (41.05%), Postives = 57/95 (60.00%), Query Frame = 3 
Query:  423 RIIPIAALNPYQG-RWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSL-NLHKEFHHLKND 701
            +I PI +L P+ G +W I+ARV  K D+R +N     GK+FSF L+D +   IR T FN  VD F  ++  G+VY  S G + N ++ F ++ ND
Sbjct:    8 QIQPIDSLTPFLGGKWWIRARVADKSDIRTWNKPTSQGKLFSFTLID-ESAAIRATVFNDAVDTFEPLVVNGQVYYFSGGQVKNANRRFSNVNND 101
The following BLAST results are available for this feature:
BLAST of CX295021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RFA1_CRIFA8.305e-1241.05Replication factor A 51 kDa subunit OS=Crithidia f... [more]

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Properties
Property NameValue
Genbank descriptionC05065G03SK DroRLeaf1 Citrus clementina cDNA clone C05065G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295021 ID=CX295021; Name=CX295021; organism=Citrus clementina; type=EST; length=738bp
GAGGGAATTATGATATTTTAGCAAAGTTGTCCTGTTTCTTTATTATCTTT
TGCCCTTTGTGCAGAATTATTGTTGTGTTGAACATGGAGACTATAATATT
GGATTGCGAACCAATTGGGAATCCAAAAATATTTTCCGAATCTGAGTTAA
CTGCTCAAAAAACTATTCCTAGTAACAATTTGCCGCAGCCAGTTAGAGTT
AATAATTACAGTGCTCCAAATTCCGGCACATTTAATCTGCAGAATTCTGG
TACATTTAATTCTCAAAATCCAGGTTCATTCAGTACTCCAAATTCTGGGA
CATTTAGAGCTCCAAATGCTGGTAGTATTGTGCGGAGTTTCCAACCCACT
GTTCAGCCACCTTATCAACCGCCCCCAAATTTCAGAAATCATGGTCCAAT
ATTGAAGAATGAAGCTCCAGCACGCATCATTCCTATTGCTGCTTTGAATC
CTTATCAGGGGAGGTGGGCTATCAAGGCCAGAGTGACTGCAAAGGGAGAT
CTTCGCCGCTACAACAATGCTCGAGGAGATGGGAAGGTCTTCTCTTTTGA
CCTCCTTGACTCTGATGGAGGGGAGATAAGAGTTACCTGCTTTAATGCTG
TTGTTGACCGCTTCTATGAAATTATTGAGGTTGGTAGAGTCTATTTGATC
TCAAAAGGTAGCTTGAACCTGCACAAAGAATTTCACCATCTGAAGAATGA
TGGGAGATATTTTTGGAGGCAACTTCACTGTGGATCTC
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