CX295036

Overview
NameCX295036
Unique NameCX295036
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_ANAD2 (V-type ATP synthase alpha chain OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=atpA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.247e-29
Identity = 69/171 (40.35%), Postives = 107/171 (62.57%), Query Frame = 3
Query:    6 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPD-FINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRL 515
            +VGAVSPPGGD S+PVT  +L      W L   LA R+H+P+V+W +S++     L  ++E+   D F  +R +AR++LQRE +L E+ +LVG ++L + +++ LE+A+LLRE +L Q+A  P D  CP  K+  M+R  + ++  A  AV  GAG+  + I  T +  RL
Sbjct:  379 MVGAVSPPGGDLSEPVTQCSLRATGALWALSADLAHRRHYPAVDWSVSFTLEGDRLAGWFEREAGDGFGALRDEARKLLQRERELAEVAELVGTESLQDAERLVLESARLLREGFLRQSALDPADATCPPAKAFEMLRLFLEWHRRAGAAV--GAGVPLRSILDTGLGARL 547          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_ANADE (V-type ATP synthase alpha chain OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=atpA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.159e-29
Identity = 68/171 (39.77%), Postives = 107/171 (62.57%), Query Frame = 3
Query:    6 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPD-FINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRL 515
            +VGAVSPPGGD S+PVT  +L      W L   LA R+H+P+V+W +S++     L  ++E+   D F  +R +AR++LQRE +L E+ +LVG ++L + +++ LE+A+LLRE +L Q+A  P D  CP  K+  M+R  + ++  A  A+  GAG+  + I  T +  RL
Sbjct:  379 MVGAVSPPGGDLSEPVTQCSLRATGALWALSADLAHRRHYPAVDWSVSFTLEGDRLAGWFEREAGDGFGALRDEARKLLQRERELAEVAELVGTESLQDAERLVLESARLLREGFLRQSALDPADATCPPAKAFEMLRLFLEWHRRAGAAI--GAGVPLRSILDTGLGARL 547          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_ANADF (V-type ATP synthase alpha chain OS=Anaeromyxobacter sp. (strain Fw109-5) GN=atpA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.818e-28
Identity = 68/180 (37.78%), Postives = 109/180 (60.56%), Query Frame = 3
Query:    6 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYE-QFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVS 542
            IVGAVSPPGGD S+PVT  +L      W L   LA R+H+P+V+W IS+S  +  L  ++E +    F  +R +A ++LQRE +L E+ +LVG ++L + +++ LE+A+LLRE +L Q+A+ P D  CP  K++ M+R  +  +  A  A+  G  +      +++++  LG    RL S
Sbjct:  378 IVGAVSPPGGDLSEPVTQCSLRATGALWALSADLAHRRHYPAVDWAISFSLEAERLRGWFEREAGEGFGALRDEAMKLLQRERELVEVAELVGTESLQDAERLVLESARLLREGFLRQSAYDPVDASCPPRKALEMLRLHLELHGRAVNAIAGGVPL------HSILEAGLGARLLRLGS 551          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_PYRIL (V-type ATP synthase alpha chain OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=atpA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.637e-27
Identity = 58/154 (37.66%), Postives = 97/154 (62.99%), Query Frame = 3
Query:    6 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFY-EQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKG 464
            I  +VSPPGGDF++PVTS TL  +  FW L  +LA  +H+P+++WL+++S+Y   +E ++ +   PD+  IR   + +L +E +L EIV+++G +AL+E +K  L  A ++RE +L Q+A+ P D      K   +M+ I  +Y    +A+E G
Sbjct:  390 IAASVSPPGGDFTEPVTSNTLRFIGAFWPLSPRLAYSRHYPAIDWLLAFSRYVDTVEVWWSKNISPDWRKIRDTLQSILVKEAELQEIVRILGTEALSEYEKHILNVAYMIREGFLKQDAYNPVDTPSSPIKQYLLMKAIYAYYEEGLKAIEAG 543          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_THEPD (V-type ATP synthase alpha chain OS=Thermofilum pendens (strain Hrk 5) GN=atpA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.974e-27
Identity = 54/158 (34.18%), Postives = 98/158 (62.03%), Query Frame = 3
Query:    6 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFY-EQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMD 476
            ++GAVSPPGGD+++PVT  TL  V   W LD  LA R+HFP++NWL S+S+Y+  +E ++ +   P+F   R +A  +L    ++  I  +VG+ AL +  ++ L T+++++E +L Q A +  D FC   K  W+++ ++ F++ + + + K   ++
Sbjct:  389 VLGAVSPPGGDYNEPVTIHTLRFVGTMWALDTDLAYRRHFPAINWLKSFSQYADIIERWWVKNVSPEFPKYRRRALRLLTVASEIEAIASVVGEGALPDDQRLILLTSEIIKEGFLRQTALSGEDVFCKPEKQYWLLKMMMDFFDKSYELIRKRVSIE 546          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_PYRAE (V-type ATP synthase alpha chain OS=Pyrobaculum aerophilum GN=atpA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.222e-26
Identity = 57/154 (37.01%), Postives = 97/154 (62.99%), Query Frame = 3
Query:    6 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFY-EQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKG 464
            I  +VSPPGGDF++PVTS TL  +  FW L  +LA  +H+P+++WL+++S+Y   +E ++ +   P++  IR   + +L +E +L EIV+++G +AL+E +K  L  A ++RE +L Q+A+ P D      K   +M+ I  +Y    +A+E G
Sbjct:  390 IAASVSPPGGDFTEPVTSNTLRFIGAFWPLSPRLAYSRHYPAIDWLVAFSRYVDTVEVWWSKNVSPEWRRIRDALQSILVKEAELQEIVRILGTEALSEYEKHILNVAFMIREGFLKQDAYNPVDTPSAPIKQFLLMKAIYTYYEEGLKAIESG 543          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_PYRCJ (V-type ATP synthase alpha chain OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=atpA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.443e-26
Identity = 57/154 (37.01%), Postives = 97/154 (62.99%), Query Frame = 3
Query:    6 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFY-EQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKG 464
            I  +VSPPGGDF++PVTS TL  +  FW L  +LA  +H+P+++WL+++S+Y   +E ++ +   P++  IR   + +L +E +L EIV+++G +AL+E +K  L  A ++RE +L Q+A+ P D      K   +M+ I  +Y    +A+E G
Sbjct:  390 IAASVSPPGGDFTEPVTSNTLRFIGAFWPLSPRLAYSRHYPAIDWLMAFSRYVDTVEVWWSKNVSPEWRRIRDVLQSILVKEAELQEIVRILGTEALSEYEKHILNVAFMIREGFLKQDAYNPVDTPTSPIKQFLLMKAIYVYYEEGLKAIEAG 543          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_PYRAR (V-type ATP synthase alpha chain OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=atpA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.103e-25
Identity = 57/154 (37.01%), Postives = 96/154 (62.34%), Query Frame = 3
Query:    6 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFY-EQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKG 464
            I  +VSPPGGDF++PVTS TL  +  FW L  +LA  +H+P+++WL ++S+Y   +E ++ +   P++  IR   + +L +E +L EIV+++G +AL+E +K  L  A ++RE +L Q+A+ P D      K   +M+ I  +Y    +A+E G
Sbjct:  390 IAASVSPPGGDFTEPVTSNTLRFIGAFWPLSPRLAYSRHYPAIDWLAAFSRYVDTVEVWWSKNVSPEWRKIRDSLQSLLVKEAELQEIVRILGTEALSEYEKHILNVAFMIREGFLKQDAYNPIDTPSAPIKQFLLMKAIYTYYEEGLKAIEAG 543          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_THENV (V-type ATP synthase alpha chain OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=atpA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.457e-25
Identity = 57/154 (37.01%), Postives = 95/154 (61.69%), Query Frame = 3
Query:    6 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFY-EQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKG 464
            I  +VSPPGGDF++PVTS TL  +  FW L  +LA  +H+P+++WL ++S+Y   +E ++ +    ++  IR   + +L +E +L EIV+++G +AL+E +K  L  A ++RE +L Q+AF P D      K   +M+ I  +Y    +A+E G
Sbjct:  390 IAASVSPPGGDFTEPVTSNTLRFIGAFWPLSPRLAYSRHYPAIDWLAAFSRYVDTVEVWWSKNISTEWRRIRDTLQSLLVKEAELQEIVRILGTEALSEYEKHVLNVAFMIREGFLKQDAFNPVDTPSSPIKQFLLMKAIYAYYEEGMKAIEAG 543          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_NITOC (V-type ATP synthase alpha chain OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=atpA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.633e-24
Identity = 60/154 (38.96%), Postives = 91/154 (59.09%), Query Frame = 3
Query:    6 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYS-KYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKG 464
            ++GAVSPPGGDFS+PVTS T  IV+ FW L K LA  +H+P+V+W  S+S     A   + E  D  +   R +A  +L + ++L+ IV LVG +AL+   +  LE A L++E  L Q+A  P D FC   K   ++  ++  Y+   + +E+G
Sbjct:  384 LIGAVSPPGGDFSEPVTSHTKEIVRTFWALSKDLADARHYPAVSWRESFSDDIPVAARWWAEHIDKHWQAGRAEAMTLLTQAEELSRIVNLVGPEALSGTQRWILEGATLIKEGLLQQSALDPVDSFCAPEKQFVLLDLMLQIYHQGVELLEQG 537          
The following BLAST results are available for this feature:
BLAST of CX295036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
VATA_ANAD26.247e-2940.35V-type ATP synthase alpha chain OS=Anaeromyxobacte... [more]
VATA_ANADE8.159e-2939.77V-type ATP synthase alpha chain OS=Anaeromyxobacte... [more]
VATA_ANADF1.818e-2837.78V-type ATP synthase alpha chain OS=Anaeromyxobacte... [more]
VATA_PYRIL7.637e-2737.66V-type ATP synthase alpha chain OS=Pyrobaculum isl... [more]
VATA_THEPD9.974e-2734.18V-type ATP synthase alpha chain OS=Thermofilum pen... [more]
VATA_PYRAE2.222e-2637.01V-type ATP synthase alpha chain OS=Pyrobaculum aer... [more]
VATA_PYRCJ8.443e-2637.01V-type ATP synthase alpha chain OS=Pyrobaculum cal... [more]
VATA_PYRAR1.103e-2537.01V-type ATP synthase alpha chain OS=Pyrobaculum ars... [more]
VATA_THENV2.457e-2537.01V-type ATP synthase alpha chain OS=Thermoproteus n... [more]
VATA_NITOC4.633e-2438.96V-type ATP synthase alpha chain OS=Nitrosococcus o... [more]

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Properties
Property NameValue
Genbank descriptionC05065H07SK DroRLeaf1 Citrus clementina cDNA clone C05065H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295036 ID=CX295036; Name=CX295036; organism=Citrus clementina; type=EST; length=670bp
GAGGCATTGTTGGTGCAGTTTCTCCTCCTGGAGGAGATTTCTCAGATCCT
GTAACATCTGCCACCCTCAGCATTGTGCAGGTCTTCTGGGGTCTGGATAA
GAAACTTGCGCAGAGAAAGCATTTTCCTTCTGTAAACTGGCTTATTTCTT
ACTCGAAGTATTCAACAGCATTAGAGTCTTTCTATGAGCAATTTGATCCG
GATTTTATTAACATCAGGACAAAGGCTAGAGAGGTGCTGCAGAGAGAAGA
TGACCTGAATGAAATTGTGCAACTTGTCGGAAAGGATGCTTTGGCTGAAG
GAGATAAGATTACGCTAGAGACTGCTAAGCTTTTGAGGGAGGACTATCTT
GCTCAGAACGCATTTACTCCATATGACAAGTTCTGCCCTTTCTACAAGTC
TGTTTGGATGATGCGTAACATTATCCATTTCTATAACTTGGCCAATCAGG
CCGTAGAGAAAGGAGCTGGTATGGATGGTCAGAAGATAACTTACACCCTT
ATCAAGCATCGGCTGGGAGATCTATTTTACAGATTAGTATCACAGAAGTT
TGAGGACCCACAGAAGAGAACAGCTCTGGTTGCTAAATTCAAAAGCTGCA
TGAGGATCTGACCGCTGGTTTCGCGCCTCGAGATGAACTCGATGATGAAG
GTCAGTAGATCTTGTATCAG
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