CX295036

Overview
NameCX295036
Unique NameCX295036
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_CHLTR (V-type ATP synthase alpha chain OS=Chlamydia trachomatis GN=atpA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.705e-18
Identity = 49/144 (34.03%), Postives = 82/144 (56.94%), Query Frame = 3
Query:    6 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYN 437
            I GAVSP GG+F +PVT ATLS+V  F GL K  A  + +PS++ +IS+SKY  ++    E+  P +     +A   L+   ++ + +++VG++ ++  D      ++L    YL QNAF   D +CPF + + +   + H +N
Sbjct:  394 ICGAVSPAGGNFEEPVTQATLSVVGAFCGLSKARADARRYPSIDPMISWSKYLDSVAEILEKKVPGWGESVKQASRFLEEGAEIGKRIEVVGEEGISMEDMEIFLKSELYDFCYLQQNAFDAEDCYCPFDRQIELFSLMNHIFN 537          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_CHLTB (V-type ATP synthase alpha chain OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=atpA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.705e-18
Identity = 49/144 (34.03%), Postives = 82/144 (56.94%), Query Frame = 3
Query:    6 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYN 437
            I GAVSP GG+F +PVT ATLS+V  F GL K  A  + +PS++ +IS+SKY  ++    E+  P +     +A   L+   ++ + +++VG++ ++  D      ++L    YL QNAF   D +CPF + + +   + H +N
Sbjct:  394 ICGAVSPAGGNFEEPVTQATLSVVGAFCGLSKARADARRYPSIDPMISWSKYLDSVAEILEKKVPGWGESVKQASRFLEEGAEIGKRIEVVGEEGISMEDMEIFLKSELYDFCYLQQNAFDAEDCYCPFDRQIELFSLMNHIFN 537          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_CHLTA (V-type ATP synthase alpha chain OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=atpA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.705e-18
Identity = 49/144 (34.03%), Postives = 82/144 (56.94%), Query Frame = 3
Query:    6 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYN 437
            I GAVSP GG+F +PVT ATLS+V  F GL K  A  + +PS++ +IS+SKY  ++    E+  P +     +A   L+   ++ + +++VG++ ++  D      ++L    YL QNAF   D +CPF + + +   + H +N
Sbjct:  394 ICGAVSPAGGNFEEPVTQATLSVVGAFCGLSKARADARRYPSIDPMISWSKYLDSVAEILEKKVPGWGESVKQASRFLEEGAEIGKRIEVVGEEGISMEDMEIFLKSELYDFCYLQQNAFDAEDCYCPFDRQIELFSLMNHIFN 537          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_CHLT2 (V-type ATP synthase alpha chain OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=atpA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.705e-18
Identity = 49/144 (34.03%), Postives = 82/144 (56.94%), Query Frame = 3
Query:    6 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYN 437
            I GAVSP GG+F +PVT ATLS+V  F GL K  A  + +PS++ +IS+SKY  ++    E+  P +     +A   L+   ++ + +++VG++ ++  D      ++L    YL QNAF   D +CPF + + +   + H +N
Sbjct:  394 ICGAVSPAGGNFEEPVTQATLSVVGAFCGLSKARADARRYPSIDPMISWSKYLDSVAEILEKKVPGWGESVKQASRFLEEGAEIGKRIEVVGEEGISMEDMEIFLKSELYDFCYLQQNAFDAEDCYCPFDRQIELFSLMNHIFN 537          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_CHLMU (V-type ATP synthase alpha chain OS=Chlamydia muridarum GN=atpA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.227e-18
Identity = 49/144 (34.03%), Postives = 83/144 (57.64%), Query Frame = 3
Query:    6 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYN 437
            I GAVSP GG+F +PVT ATLS+V  F GL K  A  + +PS++ +IS+SKY  ++    E+  P + +   KA   L+   ++ + +++VG++ ++  D      ++L    YL QNAF   D +CPF + + +   + H ++
Sbjct:  394 ICGAVSPAGGNFEEPVTQATLSVVGAFCGLSKARADARRYPSIDPMISWSKYLDSVAEILEKKVPGWGDSVKKASRFLEEGAEIGKRIEVVGEEGISMEDIEIFLKSELYDFCYLQQNAFDAEDCYCPFDRQIELFSLMSHIFS 537          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_CHLPN (V-type ATP synthase alpha chain OS=Chlamydia pneumoniae GN=atpA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.909e-18
Identity = 49/144 (34.03%), Postives = 82/144 (56.94%), Query Frame = 3
Query:    6 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYN 437
            I GAVSP GG+F +PVT +TL++V  F GL K  A  + +PS++ LIS+SKY   +    E+    +     KA + L++  ++ + +++VG++ ++  D      A+L    YL QNAF P D +CPF + + +   I   ++
Sbjct:  394 ICGAVSPAGGNFEEPVTQSTLAVVGAFCGLSKARADARRYPSIDPLISWSKYLNQVGQILEEKVSGWGGAVKKAAQFLEKGSEIGKRMEVVGEEGVSMEDMEIYLKAELYDFCYLQQNAFDPVDCYCPFERQIELFSLISRIFD 537          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_PARUW (V-type ATP synthase alpha chain OS=Protochlamydia amoebophila (strain UWE25) GN=atpA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.485e-17
Identity = 45/144 (31.25%), Postives = 83/144 (57.64%), Query Frame = 3
Query:    6 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYN 437
            I GAVSP GG+F +PVT ATLS+V  F GL +  +  + +P+++ L+S+SKY   + +        +  +  +AR +L   +++ + +++VG++ ++  D +T   A+L    YL QNAF   D +CP  + + + + I   ++
Sbjct:  398 IGGAVSPAGGNFEEPVTQATLSVVGAFLGLSRARSDSRRYPAIDPLLSWSKYVDTVGNELSHQVDGWDQMVKRARHILFNGNEIGKRMEVVGEEGISMEDMLTYLKAELYDFSYLQQNAFDKEDAYCPLKRQIALFQLINQIFD 541          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_CHLAB (V-type ATP synthase alpha chain OS=Chlamydophila abortus GN=atpA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.485e-17
Identity = 48/133 (36.09%), Postives = 74/133 (55.64%), Query Frame = 3
Query:    6 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSV 404
            I GAVSP GG+F +PVT ATLS+V  F GL K  A  + +PS++ +IS+SKY   +    E     +     KA   L+   ++ + +++VG++ +   D      ++L    YL QNAF P D +CPF + +
Sbjct:  394 ICGAVSPAGGNFEEPVTQATLSVVGAFCGLSKARADARRYPSIDPMISWSKYLDQVGEILEDKVQGWGEAVKKANYFLREGSEIGKRMEVVGEEGIPMEDMEIYLKSELYDFCYLQQNAFDPVDCYCPFDRQI 526          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_CHLCV (V-type ATP synthase alpha chain OS=Chlamydophila caviae GN=atpA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.084e-16
Identity = 48/133 (36.09%), Postives = 73/133 (54.89%), Query Frame = 3
Query:    6 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSV 404
            I GAVSP GG+F +PVT ATLS+V  F GL K  A  + +PS++ +IS+SKY   +    E     +     KA   L+   ++ + +++VG++ +   D      A+L    YL QNAF   D +CPF + +
Sbjct:  394 ICGAVSPAGGNFEEPVTQATLSVVGAFCGLSKARADARRYPSIDPMISWSKYLDQVGDILENKIQGWGKAVKKANYFLREGSEIGKRMEVVGEEGIPMEDMEIYLKAELYDFCYLQQNAFDAVDCYCPFDRQI 526          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_BORHD (V-type ATP synthase alpha chain OS=Borrelia hermsii (strain DAH) GN=atpA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.931e-15
Identity = 42/122 (34.43%), Postives = 74/122 (60.66%), Query Frame = 3
Query:   12 GAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYD 377
            G+VSP GG+F +PVT ATL +V  F GL ++ +  + FP++N L S+SKY   +E    ++          AR+ L + +++N+++++VG++ ++ GD +    ++LL   YL QN+F   D
Sbjct:  392 GSVSPAGGNFEEPVTQATLKVVGAFHGLTRERSDARKFPAINPLESWSKYRGVVEFGKTEY----------ARDFLAKGNEINQMMKVVGEEGISNGDFLVYLKSELLDSCYLQQNSFDSVD 503          
The following BLAST results are available for this feature:
BLAST of CX295036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
VATA_CHLTR1.705e-1834.03V-type ATP synthase alpha chain OS=Chlamydia trach... [more]
VATA_CHLTB1.705e-1834.03V-type ATP synthase alpha chain OS=Chlamydia trach... [more]
VATA_CHLTA1.705e-1834.03V-type ATP synthase alpha chain OS=Chlamydia trach... [more]
VATA_CHLT21.705e-1834.03V-type ATP synthase alpha chain OS=Chlamydia trach... [more]
VATA_CHLMU2.227e-1834.03V-type ATP synthase alpha chain OS=Chlamydia murid... [more]
VATA_CHLPN2.909e-1834.03V-type ATP synthase alpha chain OS=Chlamydia pneum... [more]
VATA_PARUW5.485e-1731.25V-type ATP synthase alpha chain OS=Protochlamydia ... [more]
VATA_CHLAB5.485e-1736.09V-type ATP synthase alpha chain OS=Chlamydophila a... [more]
VATA_CHLCV2.084e-1636.09V-type ATP synthase alpha chain OS=Chlamydophila c... [more]
VATA_BORHD3.931e-1534.43V-type ATP synthase alpha chain OS=Borrelia hermsi... [more]

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Properties
Property NameValue
Genbank descriptionC05065H07SK DroRLeaf1 Citrus clementina cDNA clone C05065H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295036 ID=CX295036; Name=CX295036; organism=Citrus clementina; type=EST; length=670bp
GAGGCATTGTTGGTGCAGTTTCTCCTCCTGGAGGAGATTTCTCAGATCCT
GTAACATCTGCCACCCTCAGCATTGTGCAGGTCTTCTGGGGTCTGGATAA
GAAACTTGCGCAGAGAAAGCATTTTCCTTCTGTAAACTGGCTTATTTCTT
ACTCGAAGTATTCAACAGCATTAGAGTCTTTCTATGAGCAATTTGATCCG
GATTTTATTAACATCAGGACAAAGGCTAGAGAGGTGCTGCAGAGAGAAGA
TGACCTGAATGAAATTGTGCAACTTGTCGGAAAGGATGCTTTGGCTGAAG
GAGATAAGATTACGCTAGAGACTGCTAAGCTTTTGAGGGAGGACTATCTT
GCTCAGAACGCATTTACTCCATATGACAAGTTCTGCCCTTTCTACAAGTC
TGTTTGGATGATGCGTAACATTATCCATTTCTATAACTTGGCCAATCAGG
CCGTAGAGAAAGGAGCTGGTATGGATGGTCAGAAGATAACTTACACCCTT
ATCAAGCATCGGCTGGGAGATCTATTTTACAGATTAGTATCACAGAAGTT
TGAGGACCCACAGAAGAGAACAGCTCTGGTTGCTAAATTCAAAAGCTGCA
TGAGGATCTGACCGCTGGTTTCGCGCCTCGAGATGAACTCGATGATGAAG
GTCAGTAGATCTTGTATCAG
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