CX295040

Overview
NameCX295040
Unique NameCX295040
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_THET8 (60 kDa chaperonin OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=groL PE=1 SV=3)

HSP 1 Score: 220.32 bits (560), Expect = 8.281e-57
Identity = 118/237 (49.79%), Postives = 163/237 (68.78%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLS-SDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+ + L DIA +TGGTVI +E+G  L+     +LG A +V +TKD TTIVG    ++ +  R+  I+  +E  + +Y REKL ER+AKL+GGVAVI+VGA TETELKEKK R EDALNAT+AA           TLLR  S V+ + + L+ D E  GA IV+RAL  P + IA+NAG  GSV+ +++L+ + N +YG+NAATG + D++ AGI+DP KV R  L++A+S+
Sbjct:  276 APGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRITKDETTIVGGKGKKEDIEARINGIKKELETTDSEYAREKLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRAAVEEGIVPGGGVTLLRAISAVEELIKKLEGD-EATGAKIVRRALEEPARQIAENAGYEGSVIVQQILAETKNPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNAASI 511          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_THET2 (60 kDa chaperonin OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=groL PE=1 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 8.281e-57
Identity = 118/237 (49.79%), Postives = 163/237 (68.78%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLS-SDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+ + L DIA +TGGTVI +E+G  L+     +LG A +V +TKD TTIVG    ++ +  R+  I+  +E  + +Y REKL ER+AKL+GGVAVI+VGA TETELKEKK R EDALNAT+AA           TLLR  S V+ + + L+ D E  GA IV+RAL  P + IA+NAG  GSV+ +++L+ + N +YG+NAATG + D++ AGI+DP KV R  L++A+S+
Sbjct:  276 APGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRITKDETTIVGGKGKKEDIEARINGIKKELETTDSEYAREKLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRAAVEEGIVPGGGVTLLRAISAVEELIKKLEGD-EATGAKIVRRALEEPARQIAENAGYEGSVIVQQILAETKNPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNAASI 511          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_PELTS (60 kDa chaperonin OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=groL PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.281e-57
Identity = 120/236 (50.85%), Postives = 162/236 (68.64%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L DIAILTGGTVI +EVGL LDK   + LG A+KV + K+ T IVG   + D ++KRVAQI+  IE    ++++EKL ER+AKL+GGVAVIQVGA TETE+K+KKLR+EDALNAT+AA             +     +D +     + +EK G DIV+RAL  PL+ IA NAG+ GSV+ EKV ++D    G+NA TG + +++ AGI+DP KV R  L++A+S+
Sbjct:  277 APGFGDRRKAMLQDIAILTGGTVITEEVGLKLDKATIDQLGRANKVRVKKEETIIVGGAGSTDEITKRVAQIKKQIEETTSEFDKEKLQERLAKLAGGVAVIQVGAATETEMKDKKLRIEDALNATRAAVEEGIVPGGGVAYISALKGLDGL--DAGSLDEKTGIDIVRRALEEPLRQIASNAGLEGSVIVEKVKNAD-PGIGFNALTGEFVNMIDAGIVDPAKVTRTALQNAASI 509          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_METFK (60 kDa chaperonin OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=groL PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.281e-57
Identity = 121/236 (51.27%), Postives = 159/236 (67.37%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L+DIAILTGGTVI +EVGL+L+KV  E LG A +V + K+ TTI+    +++ +  R+ QI+  IE+A  DY+REKL ER+AKL+GGVAVI+VGA TETE+KEKK RVEDAL+AT+AA            LLR  S +  +K   DN ++  G  IV RA+  PL+ I  NAG   SVV  KVL    + YGYNA+ G Y DL+  G++DP KV R  L++A+SV
Sbjct:  278 APGFGDRRKAMLEDIAILTGGTVIAEEVGLSLEKVTLENLGQAKRVEIGKENTTIIDGAGSENNIKVRIDQIKKQIEDATSDYDREKLQERVAKLAGGVAVIKVGAATETEMKEKKARVEDALHATRAAVEEGIVPGGGVALLRARSSIKELKG--DNPDQDAGIKIVLRAIEEPLRQIVANAGDEPSVVVNKVLEGTGN-YGYNASNGTYGDLVELGVLDPAKVTRSALQNAASV 510          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_LACPL (60 kDa chaperonin OS=Lactobacillus plantarum GN=groL PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.281e-57
Identity = 121/236 (51.27%), Postives = 162/236 (68.64%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+ + L DIAILTGGTVI D++GL L     + LG A+KV +TKD TTIV    ++DA+S+RV  IR  I     D+++EKL ER+AKL+GGVAV++VGA TETELKE+K R+EDALNAT+AA            L+ +   V A+KET D    + G +IVKRAL  P++ IA+NAG+ GSV+ EK +       G+NAAT  + D++ AGI+DPTKV R  L++A+SV
Sbjct:  276 APGFGDRRKEQLQDIAILTGGTVITDDLGLELKDTTIDQLGQANKVTVTKDNTTIVEGAGSKDAISERVEFIRNQIGETTSDFDKEKLQERLAKLAGGVAVVRVGAATETELKERKYRIEDALNATRAAVEEGFVAGGGTALINVIKDVAALKETGD---VQTGINIVKRALEEPVRQIAENAGLEGSVIVEK-MKEQKPGVGFNAATDEWVDMIKAGIVDPTKVTRSALQNAASV 507          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_DESRM (60 kDa chaperonin OS=Desulfotomaculum reducens (strain MI-1) GN=groL PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.281e-57
Identity = 121/236 (51.27%), Postives = 162/236 (68.64%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L+DIAILTGGTVI +EVGL LDK   ++LG A ++ + K+ T IVG    Q  +  R+AQI+  IE    D++REKL ER+AKL+GGVAVIQVGA TE E+KEKKLR++DALNAT+AA             + + + +D+++  L+ D  K G DIVKRAL  PL+ IA NAG+ GSVV EKV ++     G+NA +  Y D++AAGIIDP KV R  L++A+S+
Sbjct:  277 APGFGDRRKAMLEDIAILTGGTVITEEVGLKLDKAELDMLGTARQIRVKKEETIIVGGAGEQAQIEGRIAQIKKQIEETTSDFDREKLQERLAKLAGGVAVIQVGAATEVEMKEKKLRIDDALNATRAAVEEGIVPGGGSAFVNIITTLDSVQ--LEGD-AKTGVDIVKRALEEPLRQIANNAGLEGSVVVEKVRTTGK---GFNAMSEEYVDMIAAGIIDPAKVTRSALQNAASI 506          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_ALTMD (60 kDa chaperonin OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=groL PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.281e-57
Identity = 119/236 (50.42%), Postives = 159/236 (67.37%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L DIAILTGGTVI +E+GL L+KV  E LG A +VV+ KD TT+V     Q+A+  R AQI+  IE +  DY++EKL ER+AKLSGGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R ++K+  +  T DN+++ VG  +  RA+  PL+ I+ N+G   SVV  +V + D + YGYNA    Y D++  GI+DPTKV R  L+ ASS+
Sbjct:  278 APGFGDRRKAMLQDIAILTGGTVISEEIGLELEKVQLEDLGTAKRVVINKDNTTVVDGNGDQEAIEGRCAQIKGQIEESSSDYDKEKLQERLAKLSGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVPGGGVALVRAAAKLSEL--TGDNEDQTVGVKLALRAMEAPLRQISINSGAEASVVVNEVKNGDGN-YGYNAGNDTYGDMLEMGILDPTKVTRSALQFASSI 510          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_AGRT5 (60 kDa chaperonin OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=groL PE=3 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 8.281e-57
Identity = 117/236 (49.58%), Postives = 162/236 (68.64%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L+DIAILTGGTVI +++G+ L+ V  ++LG + KV ++K+ TTIV     +  +  RVAQI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KEKK R++DALNAT+AA            LLR S+K+  +K    ND+++ G +IV++AL   ++ IA+NAG   S+V  K+L  +   YGYNA TG Y DL+A GI+DP KVVR  L++A+SV
Sbjct:  278 APGFGDRRKAMLEDIAILTGGTVISEDLGIKLESVTLDMLGKSKKVSISKENTTIVDGAGQKSDIEGRVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGSTEVEVKEKKDRIDDALNATRAAVQEGIVPGGGVALLRSSTKI-TVKGV--NDDQEAGINIVRKALQSLVRQIAENAGDEASIVVGKILDKNEDNYGYNAQTGEYGDLIALGIVDPVKVVRTALQNAASV 510          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_ACEP3 (60 kDa chaperonin OS=Acetobacter pasteurianus (strain NBRC 3283 / LMG 1513 / CCTM 1153) GN=groL PE=3 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 8.281e-57
Identity = 115/236 (48.73%), Postives = 161/236 (68.22%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L+DIAILTGG VI +++G+ L+ V   +LG A KV + K+ TTIV      D +  RV QIR  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KE+K RV+DAL+AT+AA            L R + K++ +     ND+++VG DI++RAL  PL+ IA NAG +G+V++ KVL + ++ +G++A  G Y++L+ AGIIDP KVVR  L+ A+SV
Sbjct:  278 APGFGDRRKAMLEDIAILTGGQVISEDLGIKLETVTLNMLGTAKKVHIDKENTTIVDGAGKADDIKGRVKQIRAQIEETSSDYDREKLQERLAKLAGGVAVIRVGGSTEVEVKERKDRVDDALHATRAAVEEGIVPGGGTALARATLKLEGLH--YHNDDQRVGGDIIRRALQAPLRQIAHNAGEDGAVIANKVLENSDYNFGFDAQAGEYKNLVEAGIIDPAKVVRTALQDAASV 511          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH605_RHILO (60 kDa chaperonin 5 OS=Rhizobium loti GN=groL5 PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.281e-57
Identity = 117/236 (49.58%), Postives = 156/236 (66.10%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L+DIAILTGG VI +++G+ L+ VG  +LG A KV ++K+ TTIV     +  +  RVAQI+  IE    DY++EKL ER+AKL+GGVAVI+VG  TE E+KEKK RV+DALNAT+AA            LLR S  ++A+     N ++  G  IV+RAL  P + IA NAG   S+V+ K+L +    YGYNA TG Y D++A GI+DP KVVR  L+ A+SV
Sbjct:  278 APGFGDRRKAMLEDIAILTGGQVISEDLGIKLENVGLNMLGRAKKVSISKENTTIVDGAGKKAEIQGRVAQIKQQIEETTSDYDKEKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALNATRAAVEEGIVPGGGVALLRASLSINAVGA---NSDQTAGISIVRRALQAPARQIAANAGAEASIVAGKILENKGATYGYNAQTGEYGDMIAMGIVDPVKVVRTALQDAASV 510          
The following BLAST results are available for this feature:
BLAST of CX295040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_THET88.281e-5749.7960 kDa chaperonin OS=Thermus thermophilus (strain ... [more]
CH60_THET28.281e-5749.7960 kDa chaperonin OS=Thermus thermophilus (strain ... [more]
CH60_PELTS8.281e-5750.8560 kDa chaperonin OS=Pelotomaculum thermopropionic... [more]
CH60_METFK8.281e-5751.2760 kDa chaperonin OS=Methylobacillus flagellatus (... [more]
CH60_LACPL8.281e-5751.2760 kDa chaperonin OS=Lactobacillus plantarum GN=gr... [more]
CH60_DESRM8.281e-5751.2760 kDa chaperonin OS=Desulfotomaculum reducens (st... [more]
CH60_ALTMD8.281e-5750.4260 kDa chaperonin OS=Alteromonas macleodii (strain... [more]
CH60_AGRT58.281e-5749.5860 kDa chaperonin OS=Agrobacterium tumefaciens (st... [more]
CH60_ACEP38.281e-5748.7360 kDa chaperonin OS=Acetobacter pasteurianus (str... [more]
CH605_RHILO8.281e-5749.5860 kDa chaperonin 5 OS=Rhizobium loti GN=groL5 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC05065H11SK DroRLeaf1 Citrus clementina cDNA clone C05065H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295040 ID=CX295040; Name=CX295040; organism=Citrus clementina; type=EST; length=728bp
GAGGGATTGCTGCTCTTAAGCTCCTGGTTTTGGAGAGCGCAAGAGCCAGT
ACCTTGACGACATTGCTATTTTGACTGGAGGAACTGTAATCAGAGATGAG
GTGGGACTTGCCTTGGACAAAGTTGGCAAGGAGGTCCTAGGTAATGCTTC
TAAAGTTGTGCTCACAAAGGATACCACCACCATTGTGGGGGATGGCAGCA
CCCAGGATGCAGTGAGCAAACGAGTGGCGCAAATCAGAACTCTAATTGAG
AACGCTGAGCAAGACTATGAAAGGGAGAAGCTTAATGAAAGAATTGCTAA
ACTGTCAGGTGGTGTTGCTGTCATACAGGTTGGAGCTCAAACTGAGACAG
AGCTTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAG
GCTGCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAG
ACTCTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAG
AAAAGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAA
TTAATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGT
GCTTTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACT
ACGAAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGA
TGTTGCTTGGAGCATGCTTCCTCGGTGG
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