CX295040

Overview
NameCX295040
Unique NameCX295040
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:1119..1846. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH602_SYNY3 (60 kDa chaperonin 2 OS=Synechocystis sp. (strain PCC 6803) GN=groL2 PE=1 SV=4)

HSP 1 Score: 234.187 bits (596), Expect = 5.542e-61
Identity = 125/238 (52.52%), Postives = 165/238 (69.33%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVG--DGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            AP FG+R+   L DIAILTGG+VI +++GL+LD V  + LG A K  L KD T +V   D      V +R+ Q+R     ++ DY++EK+ ERIAKL+GGVAVI+VGA TETELK++KLR+EDALNATKAA           TL+RL+ K+++ K  L NDEE+V ADI+ +AL  PL  +A NAGV GSV+ EKV  +  ++ GYN  TG  EDL+AAGIIDP KVVR  L++A+S+
Sbjct:  276 APAFGDRRKAVLQDIAILTGGSVISEDIGLSLDTVSLDQLGQAVKATLEKDNTILVAGADKRASAGVKERIEQLRKEYAASDSDYDKEKIQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATKAAVEEGIVPGGGTTLIRLAGKIESFKAQLSNDEERVAADIIAKALEAPLHQLASNAGVEGSVIVEKVKEATGNQ-GYNVITGKIEDLIAAGIIDPAKVVRSALQNAASI 512          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH601_SYNS3 (60 kDa chaperonin 1 OS=Synechococcus sp. (strain CC9311) GN=groL1 PE=3 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.542e-61
Identity = 125/236 (52.97%), Postives = 170/236 (72.03%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            AP FGER+   L DIA+LTGG VI ++  + LDKV  E LG A ++ ++KD+TTIV    +++AVS RVA I+  ++N + +Y++EKLNERIAKL+GGVAVI+VGA TETELK +KLR+EDALNAT+AA           TLL +S+++DA+   L+ D +K G +IV+RAL  PL+ IA+NAG NG VV ++V +S     G+NA TGN+EDLM AGI+D +KVVR  L+ A S+
Sbjct:  276 APSFGERRKAALADIAVLTGGQVISEDRAMTLDKVTMEDLGRARRITISKDSTTIVASDDSKEAVSARVASIKRELDNTDSEYDQEKLNERIAKLAGGVAVIKVGAPTETELKNRKLRIEDALNATRAAVEEGIVAGGGSTLLHISAELDALTSGLEGD-QKTGVEIVQRALSAPLRQIAENAGSNGDVVVDRVRNSGE---GFNALTGNFEDLMNAGILDASKVVRLALQDAVSI 507          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH602_THEVL (60 kDa chaperonin 2 OS=Thermosynechococcus vulcanus GN=groL2 PE=3 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.235e-60
Identity = 128/236 (54.24%), Postives = 164/236 (69.49%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            AP FGER+   L DIAILTGG VI +EVGL L+ V   +LG AS V +TKDTT +V +   +  + KRV Q++  +   + +Y++EKL ERIAKL GGVAVI+VGA TETELK++KLR+EDALNATKAA           TLL L+S++DA+  +L + EE+ GA IV  AL  P+  IA NAG  G+VV E V + D   YG+NAATG YEDL++AGIIDP KVVR  L++A S+
Sbjct:  276 APAFGERRKAMLQDIAILTGGQVISEEVGLTLEDVELTMLGEASSVTVTKDTTILVSEKGNKADIQKRVEQLKQQLAETDSEYDKEKLQERIAKLVGGVAVIKVGAATETELKDRKLRLEDALNATKAAVAEGIVPGGGVTLLHLASRIDALLPSL-SPEEQTGARIVASALAAPVAQIADNAGAEGAVVVENVRAGD-FNYGFNAATGAYEDLVSAGIIDPAKVVRSALQNAGSI 509          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH602_THEEB (60 kDa chaperonin 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.235e-60
Identity = 128/236 (54.24%), Postives = 164/236 (69.49%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            AP FGER+   L DIAILTGG VI +EVGL L+ V   +LG AS V +TKDTT +V +   +  + KRV Q++  +   + +Y++EKL ERIAKL GGVAVI+VGA TETELK++KLR+EDALNATKAA           TLL L+S++DA+  +L + EE+ GA IV  AL  P+  IA NAG  G+VV E V + D   YG+NAATG YEDL++AGIIDP KVVR  L++A S+
Sbjct:  276 APAFGERRKAMLQDIAILTGGQVISEEVGLTLEDVELTMLGEASSVTVTKDTTILVSEKGNKADIQKRVEQLKQQLAETDSEYDKEKLQERIAKLVGGVAVIKVGAATETELKDRKLRLEDALNATKAAVAEGIVPGGGVTLLHLASRIDALLPSL-SPEEQTGARIVASALAAPVAQIADNAGAEGAVVVENVRAGD-FNYGFNAATGAYEDLVSAGIIDPAKVVRSALQNAGSI 509          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_HYPNA (60 kDa chaperonin OS=Hyphomonas neptunium (strain ATCC 15444) GN=groL PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.592e-60
Identity = 119/236 (50.42%), Postives = 163/236 (69.07%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L D+A+LTGG VI +++G+ L+ VG E+LG A +V + KD TTIV  G  +  +  RV+QIR  I++   DY+REKL ER+AKL+GGVAVI+VG  TE E+KE+K RV+DALNAT+AA            LLR S  +D +     ND+EK G DIV++AL  P++ IA+NAGV GSVV   +L++ +  YG+NA T  Y DL+A G+IDP KVVR  L++A+S+
Sbjct:  278 APGFGDRRKAMLQDLAVLTGGQVISEDLGIKLENVGMEMLGKAKRVSIDKDNTTIVDGGGKKKEIEARVSQIRKQIDDTSSDYDREKLQERLAKLAGGVAVIKVGGATEVEVKERKDRVDDALNATRAAVEEGIVPGGGVALLRSSKNIDVVGL---NDDEKAGIDIVRKALEAPIRQIAENAGVEGSVVVNTILNNKSRSYGFNAQTEEYGDLVAMGVIDPVKVVRSALQNAASI 510          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_AQUAE (60 kDa chaperonin OS=Aquifex aeolicus GN=groL PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.692e-60
Identity = 123/243 (50.62%), Postives = 166/243 (68.31%), Query Frame = 2
Query:    8 CCS*APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHK---YGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            C   APGFG+R+  YL DIA+LTGG  I +++G+ L+ V  ++LG A KVV+ K+ TTI+G     + +  R+ QI+  I+    DY+REKL ER+AKLSGGVA+I+VGA TE ELKEKK RVEDA++ATKAA            L+R S  ++ +K   DN ++++G DI+K+A+  PLK IA NAG +GSVV EKV+     K   +G+NAATG Y D+  AGIIDPTKVVR  +E+A+SV
Sbjct:  274 CAVKAPGFGQRRKDYLGDIAVLTGGQAITEDLGIKLESVTLDMLGQAEKVVVDKEHTTIIGGKGDPEQIKARIEQIKRQIQETTSDYDREKLQERLAKLSGGVAIIRVGAATEAELKEKKYRVEDAVHATKAAVEEGIVPGGGVALVRASEALEDLKG--DNHDQQLGIDIIKKAVRTPLKQIAYNAGYDGSVVLEKVIELGKEKGVSWGFNAATGEYVDMYEAGIIDPTKVVRTAIENAASV 514          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_THELT (60 kDa chaperonin OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=groL PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.328e-59
Identity = 123/240 (51.25%), Postives = 163/240 (67.92%), Query Frame = 2
Query:    8 CCS*APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            C   APGFG+R+   L DIAILTGGTVI DE+G+ L+ V  E LG A  V + KD T I+G     + + KR+AQI++ IE    +YE+E L ER+AKL+GGVAVI+VGA TETELKEKK R+EDAL+AT+AA           TL+R    V+ + + LD D EKVGA IV +AL  P++ IA+NAG +G+V+ EK+L+S    YG++A  G Y D+  AGIIDP KV R  L++A+S+
Sbjct:  272 CAVKAPGFGDRRKAMLQDIAILTGGTVISDELGINLEDVAIEDLGRADIVRVKKDDTIIIGGKGNPEEIKKRIAQIKSQIEQTTSEYEKETLQERMAKLAGGVAVIKVGAATETELKEKKHRIEDALSATRAAVEEGIVPGGGVTLIRSRKAVEDVLKELDGD-EKVGAMIVYKALEAPIRQIAENAGYDGAVIIEKILASKEESYGFDALKGEYTDMFKAGIIDPAKVTRSALQNAASI 510          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH602_ROSDO (60 kDa chaperonin 2 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=groL2 PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 5.187e-59
Identity = 119/236 (50.42%), Postives = 164/236 (69.49%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L DIAILTGG VI +++G+ L+ V  ++LG+A K+ +TKD TTIV     +  +  RVAQIRT IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KE+K RV+DALNAT+AA            L++    ++ +  T DN+++ VG  IV++AL  PL+ IA+NAGV+GSVV+ K+  SD+ K+G+NA T  Y D+ A G+IDP KVVR  L+ A+S+
Sbjct:  278 APGFGDRRKAMLQDIAILTGGQVISEDLGMKLESVTMDMLGSAKKIQITKDETTIVDGAGEKAEIEARVAQIRTQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEVEVKERKDRVDDALNATRAAVQEGIVVGGGVALVQAGKHLEGL--TGDNNDQNVGISIVRKALEAPLRQIAENAGVDGSVVAGKIRESDDLKFGFNAQTEEYGDMFAFGVIDPAKVVRTALQDAASI 511          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH601_SYNPW (60 kDa chaperonin 1 OS=Synechococcus sp. (strain WH7803) GN=groL1 PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 5.187e-59
Identity = 125/236 (52.97%), Postives = 164/236 (69.49%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            AP FGER+   L DIAILTGGTVI ++  + LDKV  E LG A ++ ++K+ TTIV    ++DAV++RVA IR  +EN++ +Y+REKLNERIAKL+GGVAVI+VGA TETELK +KLR+EDALNAT+AA           TL++L+  +D +   L  D ++ G +IV RAL  PL+ IA NAG NG VV E+V  S     G+NA TG YE+L+ AGI+D  KVVR  L+ A S+
Sbjct:  276 APSFGERRKAALADIAILTGGTVISEDRAMTLDKVTLEDLGRARRITISKEETTIVASEDSRDAVAERVASIRRELENSDSEYDREKLNERIAKLAGGVAVIKVGAPTETELKNRKLRIEDALNATRAAVEEGIVAGGGSTLIQLAGSLDGLANQLHGD-QRTGVEIVHRALSAPLRQIAINAGANGDVVVEQVQRSGQ---GFNALTGGYENLLEAGILDAAKVVRLGLQDAVSI 507          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_SULSY (60 kDa chaperonin OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=groL PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 6.775e-59
Identity = 122/242 (50.41%), Postives = 161/242 (66.53%), Query Frame = 2
Query:    2 RDCCS*APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            R C   APGFGER+   L DIAILTGGT I +++G+ L+ V  ++LG A KVV+ KD TTI+G     + +  R+ QI+  IE    +Y++EKL ER+AKL+GGVA+I+VGA TE ELKEKK RV+DA++ATKAA            + R S  +  IKE  +N ++  G  IVK A   PLK IA NAG  GSV+ EK+   DN  YG++AATG Y D++ AGIIDPTKVVR  L++A+S+
Sbjct:  272 RVCAVKAPGFGERRKAMLQDIAILTGGTAITEDLGIKLESVDLDMLGKADKVVVDKDNTTIIGGKGNPEDIKARIEQIKKQIETTTSEYDKEKLQERLAKLAGGVAIIKVGAATEAELKEKKDRVDDAVHATKAAVEEGIVPGGGIAIFRASRALCNIKE--ENTDKAWGIKIVKNACKVPLKQIAYNAGFEGSVIIEKIKDVDNVNYGFDAATGEYVDMVEAGIIDPTKVVRTALQNAASI 511          
The following BLAST results are available for this feature:
BLAST of CX295040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_SYNY35.542e-6152.5260 kDa chaperonin 2 OS=Synechocystis sp. (strain P... [more]
CH601_SYNS35.542e-6152.9760 kDa chaperonin 1 OS=Synechococcus sp. (strain C... [more]
CH602_THEVL1.235e-6054.2460 kDa chaperonin 2 OS=Thermosynechococcus vulcanu... [more]
CH602_THEEB1.235e-6054.2460 kDa chaperonin 2 OS=Thermosynechococcus elongat... [more]
CH60_HYPNA3.592e-6050.4260 kDa chaperonin OS=Hyphomonas neptunium (strain ... [more]
CH60_AQUAE4.692e-6050.6260 kDa chaperonin OS=Aquifex aeolicus GN=groL PE=3... [more]
CH60_THELT2.328e-5951.2560 kDa chaperonin OS=Thermotoga lettingae (strain ... [more]
CH602_ROSDO5.187e-5950.4260 kDa chaperonin 2 OS=Roseobacter denitrificans (... [more]
CH601_SYNPW5.187e-5952.9760 kDa chaperonin 1 OS=Synechococcus sp. (strain W... [more]
CH60_SULSY6.775e-5950.4160 kDa chaperonin OS=Sulfurihydrogenibium sp. (str... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05065H11SK DroRLeaf1 Citrus clementina cDNA clone C05065H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295040 ID=CX295040; Name=CX295040; organism=Citrus clementina; type=EST; length=728bp
GAGGGATTGCTGCTCTTAAGCTCCTGGTTTTGGAGAGCGCAAGAGCCAGT
ACCTTGACGACATTGCTATTTTGACTGGAGGAACTGTAATCAGAGATGAG
GTGGGACTTGCCTTGGACAAAGTTGGCAAGGAGGTCCTAGGTAATGCTTC
TAAAGTTGTGCTCACAAAGGATACCACCACCATTGTGGGGGATGGCAGCA
CCCAGGATGCAGTGAGCAAACGAGTGGCGCAAATCAGAACTCTAATTGAG
AACGCTGAGCAAGACTATGAAAGGGAGAAGCTTAATGAAAGAATTGCTAA
ACTGTCAGGTGGTGTTGCTGTCATACAGGTTGGAGCTCAAACTGAGACAG
AGCTTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAG
GCTGCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAG
ACTCTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAG
AAAAGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAA
TTAATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGT
GCTTTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACT
ACGAAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGA
TGTTGCTTGGAGCATGCTTCCTCGGTGG
back to top