CX295040

Overview
NameCX295040
Unique NameCX295040
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:1119..1846. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_NOVAD (60 kDa chaperonin OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=groL PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.847e-54
Identity = 114/236 (48.31%), Postives = 156/236 (66.10%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L DIA LT G +I +++G+ L+ V   +LG A KV + KD TTIV    + + +  RV QIR  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KE+K RV+DAL+AT+AA            LL  +  ++ +K    ND++  G DIV+RA+  P++ IA NAG +G+VVS  +L  ++   G+NAAT  YE+L AAG+IDPTKVVR  L+ A+SV
Sbjct:  278 APGFGDRRKAMLGDIATLTAGEMISEDLGIKLESVTLAMLGQAKKVTIDKDNTTIVDGAGSAEEIKARVEQIRAQIEVTTSDYDREKLQERLAKLAGGVAVIKVGGATEVEVKERKDRVDDALHATRAAVEEGIVPGGGTALLYATKALEGLKGA--NDDQTKGIDIVRRAIQAPIRQIAANAGHDGAVVSGNLLRENDENQGFNAATDTYENLKAAGVIDPTKVVRTALQDAASV 511          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_LACGA (60 kDa chaperonin OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=groL PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.847e-54
Identity = 114/236 (48.31%), Postives = 163/236 (69.07%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L+DIAILTGGTVI  ++GL L     + LG A KV +TKD+TTIV    ++DA+S+RV QI+  I +   D++REKL ER+AKL+GGVAVI+VGA TETELKE+K R+EDALNAT+AA            L+ +   +    +  D+ + + G +IV +AL  P++ IA+NAG +G+V+ +  L  ++ + GYNAAT  +E+++ AGIIDPTKV R  L++A+S+
Sbjct:  276 APGFGDRRKAMLEDIAILTGGTVISSDLGLELKDTKIDQLGKAGKVTVTKDSTTIVEGAGSKDAISERVDQIKKQIADTTSDFDREKLQERLAKLAGGVAVIKVGAATETELKERKYRIEDALNATRAAVEEGYVAGGGTALVDVMKSIQGNVKG-DSQDAQTGVNIVMKALGAPVRQIAENAGKDGAVILDH-LEHEDPEIGYNAATDKWENMVKAGIIDPTKVTRSALQNAASI 509          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_HELPG (60 kDa chaperonin OS=Helicobacter pylori (strain G27) GN=groL PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.847e-54
Identity = 118/236 (50.00%), Postives = 155/236 (65.68%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+ + L DIA+LTGG VI +E+GL+L+    E LG A ++V+ KD TTIV      D V  RVAQI+T I +   DY++EKL ER+AKLSGGVAVI+VGA +E E+KEKK RV+DAL+ATKAA            L+R + KV        +D+EKVG +I+ RA+  PL  IA NAG +G VV  +V   + H +G+NA+ G Y D+   GIIDP KV R  L++A SV
Sbjct:  277 APGFGDRRKEMLKDIAVLTGGQVISEELGLSLENAEVEFLGKAGRIVIDKDNTTIVDGKGHSDDVKDRVAQIKTQIASTTSDYDKEKLQERLAKLSGGVAVIKVGAASEVEMKEKKDRVDDALSATKAAVEEGIVIGGGAALIRAAQKVHLNL----HDDEKVGYEIIMRAIKAPLAQIAINAGYDGGVVVNEVEKHEGH-FGFNASNGKYVDMFKEGIIDPLKVERIALQNAVSV 507          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_FRAP2 (60 kDa chaperonin OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=groL PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.847e-54
Identity = 112/240 (46.67%), Postives = 158/240 (65.83%), Query Frame = 2
Query:    8 CCS*APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            C   APGFG+R+   L+DIAILTG TVI +++G+ L++   E LG AS+V ++KD TTI+     +DA+  RV Q++  +  A  DY++EKL ER+AKLSGGVAVI+VGA TE E+KEKK RV+DAL+AT+AA            L+R    +D +    DND++  G  ++K+A+  PL+ I  NAG   SVV  +V + + + YGYNAA   Y D++  GI+DPTKV R  L+HA+S+
Sbjct:  274 CAVKAPGFGDRRKAMLEDIAILTGATVISEDLGMKLEEANMEHLGTASRVQVSKDDTTIIDGAGNKDAIVNRVNQLKANVAEATSDYDKEKLQERLAKLSGGVAVIRVGAVTEAEMKEKKDRVDDALHATRAAVEEGIVAGGGVALIRAQKALDGL--VGDNDDQNHGIALLKKAIEAPLRQIVSNAGGESSVVVNEVKAKEGN-YGYNAANDTYGDMVEMGILDPTKVTRSALQHAASI 510          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_BRUO2 (60 kDa chaperonin OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=groL PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.847e-54
Identity = 113/236 (47.88%), Postives = 156/236 (66.10%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L+DIAILTGG VI +++G+ L+ V  ++LG A KV ++K+ TTIV     +  +  RV QI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KEKK RV+DALNAT+AA            LLR S+K+ A      N +++ G +IV+RA+  P + I  NAG   SV+  K+L + +  +GYN A G Y DL++ GI+DP KVVR  L++A+SV
Sbjct:  278 APGFGDRRKAMLEDIAILTGGQVISEDLGIKLESVTLDMLGRAKKVSISKENTTIVDGAGQKAEIDARVGQIKQQIEETTLDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALNATRAAVEEGIVAGGGTALLRASTKITAKGV---NADQEAGINIVRRAIQAPARQITTNAGEEASVIVGKILENTSETFGYNTANGEYGDLISLGIVDPVKVVRTALQNAASV 510          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_BORPD (60 kDa chaperonin OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=groL PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.847e-54
Identity = 114/236 (48.31%), Postives = 152/236 (64.41%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L+DIAILTGG VI +E G++L+K   + LG A ++ + K+ TTI+       ++  RV QIR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            LLR    +  +K   D  ++  G  ++ RA+  PL+ I  NAG   SVV   VL+   + YGYNAATG Y DL+  G++DPTKV R  L++A+SV
Sbjct:  278 APGFGDRRKAMLEDIAILTGGVVISEETGMSLEKATLQELGQAKRIEVGKENTTIIDGAGDSKSIEARVKQIRVQIEEATSDYDREKLQERVAKLAGGVAVIRVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALLRAKQAIADLKG--DTADQNAGIKLILRAVEEPLRTIVTNAGEEASVVVNNVLNGKGN-YGYNAATGEYTDLVEQGVLDPTKVTRTALQNAASV 510          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_BEUC1 (60 kDa chaperonin OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=groL PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.847e-54
Identity = 122/237 (51.48%), Postives = 157/237 (66.24%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLD-NDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L D+AILTGG VI + VGL+L+    + LG A K+V+TKD TTIV      D ++ RVAQIR  IEN++ DY+REKL ER+AKL+GGVAVI+ GA TE ELKE+K R+EDA+   KAA            L++         ETL+   +E  G +IVK A+  PLK IA NAG+ G VV+EKV S     +G NAATG+YEDL+AAGI DP KV R  L++A+S+
Sbjct:  276 APGFGDRRKAMLQDMAILTGGQVISETVGLSLENADLDALGQARKIVVTKDETTIVEGAGDPDQLAGRVAQIRAEIENSDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEGIVAGGGVALIQAGK---VAFETLELVGDESTGGNIVKVAIDAPLKQIAINAGLEGGVVAEKVRSLP-AGHGLNAATGDYEDLLAAGINDPVKVTRSALQNAASI 508          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_ANOFW (60 kDa chaperonin OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=groL PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.847e-54
Identity = 117/236 (49.58%), Postives = 158/236 (66.95%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L DIAILTGG VI +E+G  L       LG A+KVV+TK+ TTIV      + +  R+ QIR  +E    +++REKL ER+AKL+GGVAVI+VGA TETELKE+KLR+EDALNAT+AA            L+ + SKV AI+      +E  G  IV RA+  P++ IA+NAG+ GSV+ E+ L ++    G+NAATG + D++ AGI+DPTKV R  L++A+SV
Sbjct:  276 APGFGDRRKAMLQDIAILTGGEVITEELGRELKSTTIASLGRAAKVVVTKEHTTIVDGAGRAEDIQARINQIRAQLEETTSEFDREKLQERLAKLAGGVAVIKVGAATETELKERKLRIEDALNATRAAVEEGIVAGGGTALMNVYSKVAAIEA---EGDEATGVKIVLRAIEEPVRQIAQNAGLEGSVIVER-LKTEKPGIGFNAATGEWVDMIEAGIVDPTKVTRSALQNAASV 507          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH602_CHLAA (60 kDa chaperonin 2 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=groL2 PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.847e-54
Identity = 119/240 (49.58%), Postives = 154/240 (64.17%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS----DNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L DIAILTGGTVI +E+G  L+    + LG A +V   KD T IV     + A+  R+AQ++  IE    DY+REKL ER+AKLSGGVAVI+VGA TE  +KE+K RVEDALNAT+AA            LL     +D +  T   +EE++  ++++RAL  PL+ +A NAG +GSVV E V +     +N+ YGY+  TG Y DLM AGIIDP KVVR  LE+A SV
Sbjct:  277 APGFGDRRKAMLQDIAILTGGTVISEEIGRKLESATLQDLGRARRVKADKDNTVIVEGHGDKQAIQARIAQLKQQIETTTSDYDREKLQERVAKLSGGVAVIKVGAPTEPAMKERKARVEDALNATRAAVEEGIVPGGGVALLNAIPALDNV--TTQFEEERMALNVLRRALEEPLRQLATNAGEDGSVVVENVRNEQRKHNNNHYGYDVMTGTYVDLMQAGIIDPAKVVRSALENAISV 514          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH601_PROM1 (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain NATL1A) GN=groL1 PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.847e-54
Identity = 115/236 (48.73%), Postives = 157/236 (66.53%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            AP FGER+   L DIA+LTGGT+I ++  ++L+KV    LG A +V +TKD+TTIV + +    +S R+A I+  ++  + +Y++EKLNERIAKL+GGVAVI+VGA TETELK +KLR+EDALNAT+AA           TLL LS  +  + + L+ D +K G +I+KRAL  P K IA NAG NG VV   +        G+NA TG Y DL+ AGI+D +KV+R  L+ A S+
Sbjct:  276 APSFGERRKAALGDIAVLTGGTLISEDKAMSLEKVQISDLGQARRVTITKDSTTIVANDNQNTELSNRIASIKRELDETDSEYDQEKLNERIAKLAGGVAVIKVGAPTETELKNRKLRIEDALNATRAAIEEGIVAGGGTTLLELSEGLGDLAKKLEGD-QKTGVEIIKRALTAPTKQIAINAGFNGDVVVSDIKRLGK---GFNAQTGEYVDLLEAGILDASKVIRLALQDAVSI 507          
The following BLAST results are available for this feature:
BLAST of CX295040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_NOVAD3.847e-5448.3160 kDa chaperonin OS=Novosphingobium aromaticivora... [more]
CH60_LACGA3.847e-5448.3160 kDa chaperonin OS=Lactobacillus gasseri (strain... [more]
CH60_HELPG3.847e-5450.0060 kDa chaperonin OS=Helicobacter pylori (strain G... [more]
CH60_FRAP23.847e-5446.6760 kDa chaperonin OS=Francisella philomiragia subs... [more]
CH60_BRUO23.847e-5447.8860 kDa chaperonin OS=Brucella ovis (strain ATCC 25... [more]
CH60_BORPD3.847e-5448.3160 kDa chaperonin OS=Bordetella petrii (strain ATC... [more]
CH60_BEUC13.847e-5451.4860 kDa chaperonin OS=Beutenbergia cavernae (strain... [more]
CH60_ANOFW3.847e-5449.5860 kDa chaperonin OS=Anoxybacillus flavithermus (s... [more]
CH602_CHLAA3.847e-5449.5860 kDa chaperonin 2 OS=Chloroflexus aurantiacus (s... [more]
CH601_PROM13.847e-5448.7360 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]

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Properties
Property NameValue
Genbank descriptionC05065H11SK DroRLeaf1 Citrus clementina cDNA clone C05065H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295040 ID=CX295040; Name=CX295040; organism=Citrus clementina; type=EST; length=728bp
GAGGGATTGCTGCTCTTAAGCTCCTGGTTTTGGAGAGCGCAAGAGCCAGT
ACCTTGACGACATTGCTATTTTGACTGGAGGAACTGTAATCAGAGATGAG
GTGGGACTTGCCTTGGACAAAGTTGGCAAGGAGGTCCTAGGTAATGCTTC
TAAAGTTGTGCTCACAAAGGATACCACCACCATTGTGGGGGATGGCAGCA
CCCAGGATGCAGTGAGCAAACGAGTGGCGCAAATCAGAACTCTAATTGAG
AACGCTGAGCAAGACTATGAAAGGGAGAAGCTTAATGAAAGAATTGCTAA
ACTGTCAGGTGGTGTTGCTGTCATACAGGTTGGAGCTCAAACTGAGACAG
AGCTTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAG
GCTGCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAG
ACTCTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAG
AAAAGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAA
TTAATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGT
GCTTTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACT
ACGAAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGA
TGTTGCTTGGAGCATGCTTCCTCGGTGG
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