CX295040

Overview
NameCX295040
Unique NameCX295040
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:1119..1846. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_WOLSU (60 kDa chaperonin OS=Wolinella succinogenes GN=groL PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.179e-57
Identity = 123/236 (52.12%), Postives = 160/236 (67.80%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+ + L DIA LTGG+VI +E+G  L+      LG A++VV+ KD +TIV    ++D V+ RVAQIRT IE    DY+REKL ER+AKLSGGVAVI+VGA +E E+KEKK RV+DAL+ATKAA            L+R ++KV   K  L  D EK+G +I+KRA+  PLK IA+NAG +  VV+  V  + N  +G+NAA G Y D+ A GIIDP KV R  L++A SV
Sbjct:  278 APGFGDRRKEMLKDIATLTGGSVISEEIGKTLESATIADLGQAARVVIDKDNSTIVDGKGSKDEVNARVAQIRTQIEATTSDYDREKLQERLAKLSGGVAVIKVGAASEVEMKEKKDRVDDALSATKAAVEEGIVIGGGAALIRAAAKV---KLELSGD-EKIGYEIIKRAISAPLKQIAQNAGFDAGVVANNVEQNGNENFGFNAANGEYVDMFAEGIIDPLKVARIALQNAVSV 509          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_HYDS0 (60 kDa chaperonin OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=groL PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.179e-57
Identity = 118/235 (50.21%), Postives = 158/235 (67.23%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASS 724
            APGFG+R+  YL+DIAILTGG  I +++G+ L+ V  ++LG A KV++ K+ TTIVG    +  V  R+ QI+  I+    DY+REKL ER+AKLSGGVA+I+VGA TE+ELKEKK RVEDA++ATKAA            L + S  ++    T  N + ++G  IV  A  YPLK IA NAG  GS+V EKV    +  YG++AA G Y+D++ AGIIDPTKVVR  L++A+S
Sbjct:  278 APGFGQRRKDYLEDIAILTGGQAITEDLGIKLESVTLDMLGQAEKVIVDKENTTIVGGKGDKKKVEARIEQIKKQIKETTSDYDREKLQERLAKLSGGVAIIRVGAATESELKEKKARVEDAVHATKAAAEEGIVAGGGTALAKASRVLE--NYTSANKDRELGVKIVYNACKYPLKQIAYNAGYEGSLVLEKVYEDQDKNYGFDAANGEYKDMVKAGIIDPTKVVRTALQNAAS 510          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH604_RHIME (60 kDa chaperonin 4 OS=Rhizobium meliloti GN=groL4 PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.179e-57
Identity = 119/236 (50.42%), Postives = 157/236 (66.53%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L+DIAILTGGTVI +++G+ L+ V  ++LG A KV +TK+ TTIV     +  +  RVAQI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KEKK R++DALNAT+AA            LLR S K+    E   ND++  G +IV+RAL  P + I +NAG   S+V  K+L  +   +GYNA TG Y D++A GIIDP KVVR  L+ A+SV
Sbjct:  278 APGFGDRRKAMLEDIAILTGGTVISEDLGIKLESVTLDMLGRAKKVSITKENTTIVDGAGQKSDIEGRVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRIDDALNATRAAVQEGIVPGGGVALLRSSVKITVKGE---NDDQDAGVNIVRRALQSPARQIVENAGDEASIVVGKILEKNTDDFGYNAQTGEYGDMIAMGIIDPVKVVRTALQDAASV 510          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH604_RHIEC (60 kDa chaperonin 4 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=groL4 PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.179e-57
Identity = 117/236 (49.58%), Postives = 159/236 (67.37%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L+DIAILT GTVI +++G+ L+ V   +LG A K+ + K+ TTI+    +++ +S R+AQI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KEKK RV+DAL+AT+AA            LLR    +D IK    ND+++VG +IV+RAL  P + IA+NAG  GSVV  K+    +  YG+NA TG + DL A G+IDP KVVR  L+ ASS+
Sbjct:  278 APGFGDRRKAMLEDIAILTAGTVISEDLGIKLENVTLNMLGRAKKITVEKENTTIIDGVGSKEEISGRIAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGSTEVEVKEKKDRVDDALHATRAAVEEGILPGGGVALLRAVKALDNIKTA--NDDQRVGVEIVRRALEAPARQIAENAGAEGSVVVGKLREKSDFSYGWNAQTGEFGDLYAQGVIDPAKVVRTALQDASSI 511          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH601_RHIME (60 kDa chaperonin 1 OS=Rhizobium meliloti GN=groL1 PE=2 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 2.179e-57
Identity = 119/236 (50.42%), Postives = 157/236 (66.53%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L+DIAILTGGTVI +++G+ L+ V  ++LG A KV +TK+ TTIV     +  +  RVAQI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KEKK R++DALNAT+AA            LLR S K+    E   ND++  G +IV+RAL  P + I +NAG   S+V  K+L  +   +GYNA TG Y D++A GIIDP KVVR  L+ A+SV
Sbjct:  278 APGFGDRRKAMLEDIAILTGGTVISEDLGIKLESVTLDMLGRAKKVSITKENTTIVDGAGQKSDIEGRVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRIDDALNATRAAVQEGIVPGGGVALLRSSVKITVKGE---NDDQDAGVNIVRRALQSPARQIVENAGDEASIVVGKILEKNTDDFGYNAQTGEYGDMIAMGIIDPVKVVRTALQDAASV 510          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_THEM4 (60 kDa chaperonin OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=groL PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.846e-57
Identity = 121/236 (51.27%), Postives = 155/236 (65.68%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L DIAILTGG V  +EVG+ L+ +    LG A  V + KD T IVG    Q+ + KR+AQI+  IE    +YE+E L ER+AKL+GGVAVI+VGA TETELKEKK R+EDAL+AT+AA           TLLR    V+ I E LD D EK+GA IV  AL  P+  IAKNAG +G+++  KVL  D+  YG++A  G Y D+   GIIDP KV R  L++A+S+
Sbjct:  276 APGFGDRRKAMLQDIAILTGGIVASEEVGINLEDLTLNDLGRADVVRVKKDETIIVGGHGDQEEIKKRIAQIKAQIEQTTSEYEKETLQERMAKLAGGVAVIKVGAATETELKEKKHRIEDALSATRAAVEEGIVPGGGITLLRARKPVEKIVEELDGD-EKIGAKIVYEALSAPINQIAKNAGYDGAIIIHKVLEQDDPAYGFDALKGEYCDMFERGIIDPAKVTRSALQNAASI 510          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_DESVV (60 kDa chaperonin OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=groL PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.846e-57
Identity = 119/236 (50.42%), Postives = 157/236 (66.53%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFGER+   L DIA+LTGG V+ +++G+ L+ +    LG A +VV+ K+ TTIV      D +  RV QIR  IE    DY+REKL ER+AKL GGVAVI VGA TETE+KEKK RVEDALNAT+AA            L+R++  +D IK    +D+E  G +I++RA+  PL+ IA NAG  GS+V E+V    +  +G+NAATG YEDL+  G+IDP KV R  L++A+SV
Sbjct:  278 APGFGERRKAMLQDIAVLTGGQVVSEDMGIKLENISVADLGTAKRVVIDKENTTIVDGAGKGDDIKARVKQIRAQIEETTSDYDREKLQERLAKLVGGVAVIHVGAATETEMKEKKDRVEDALNATRAAVEEGIVPGGGTALVRVAKVLDDIKPA--DDDETAGVNIIRRAIEEPLRQIASNAGFEGSIVVERVREGKD-GFGFNAATGEYEDLIGVGVIDPKKVTRIALQNAASV 510          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_DESVH (60 kDa chaperonin OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=groL PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.846e-57
Identity = 119/236 (50.42%), Postives = 157/236 (66.53%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFGER+   L DIA+LTGG V+ +++G+ L+ +    LG A +VV+ K+ TTIV      D +  RV QIR  IE    DY+REKL ER+AKL GGVAVI VGA TETE+KEKK RVEDALNAT+AA            L+R++  +D IK    +D+E  G +I++RA+  PL+ IA NAG  GS+V E+V    +  +G+NAATG YEDL+  G+IDP KV R  L++A+SV
Sbjct:  278 APGFGERRKAMLQDIAVLTGGQVVSEDMGIKLENISVADLGTAKRVVIDKENTTIVDGAGKGDDIKARVKQIRAQIEETTSDYDREKLQERLAKLVGGVAVIHVGAATETEMKEKKDRVEDALNATRAAVEEGIVPGGGTALVRVAKVLDDIKPA--DDDETAGVNIIRRAIEEPLRQIASNAGFEGSIVVERVREGKD-GFGFNAATGEYEDLIGVGVIDPKKVTRIALQNAASV 510          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH601_VIBCH (60 kDa chaperonin 1 OS=Vibrio cholerae GN=groL1 PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.846e-57
Identity = 122/236 (51.69%), Postives = 160/236 (67.80%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L DIAILTGG VI +E+GL L+K   E LG A +V +TK+ +TI+     Q A+  RVAQIR  IE A  DY++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R +SK+ ++    DN+E+ VG  +  RA+  PL+ I KNAG   SVV+  V + + + YGYNAATG Y D++  GI+DPTKV R  L+ A+SV
Sbjct:  278 APGFGDRRKAMLQDIAILTGGVVISEEIGLELEKATLEDLGQAKRVSITKENSTIIDGAGDQAAIQGRVAQIRQQIEEATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVAGGGVALIRAASKLSSL--VGDNEEQNVGIRVALRAMEAPLRQIVKNAGDEESVVANNVRAGEGN-YGYNAATGVYGDMIEMGILDPTKVTRSALQFAASV 510          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_ACICJ (60 kDa chaperonin OS=Acidiphilium cryptum (strain JF-5) GN=groL PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.717e-57
Identity = 113/236 (47.88%), Postives = 167/236 (70.76%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L+DIAILTGG VI +++G+ L+ V   +LG A KV++ K+ TTIV     +  ++ R  QIR  IE    DY+REKL ER+AKL+GGVAVI+VG  +ETE+KE+K RV+DAL+AT+AA            L R S  ++ +K   DND+++ G DI+++A+  P++ IA+NAG +G+V+S KVL +D++ +G++A +G ++D++ AGIIDPTKVVR  L+ A+SV
Sbjct:  278 APGFGDRRKAMLEDIAILTGGQVISEDLGIKLETVTLNMLGRAKKVLIEKENTTIVEGAGKKADITGRCNQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGASETEVKERKDRVDDALHATRAAVEEGIVPGGGVALARASLAINKLK--ADNDDQRFGIDIIRKAVLAPMRQIAENAGEDGAVISGKVLDNDDYSFGFDAQSGEFKDMVKAGIIDPTKVVRTALQDAASV 511          
The following BLAST results are available for this feature:
BLAST of CX295040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_WOLSU2.179e-5752.1260 kDa chaperonin OS=Wolinella succinogenes GN=gro... [more]
CH60_HYDS02.179e-5750.2160 kDa chaperonin OS=Hydrogenobaculum sp. (strain ... [more]
CH604_RHIME2.179e-5750.4260 kDa chaperonin 4 OS=Rhizobium meliloti GN=groL4... [more]
CH604_RHIEC2.179e-5749.5860 kDa chaperonin 4 OS=Rhizobium etli (strain CFN ... [more]
CH601_RHIME2.179e-5750.4260 kDa chaperonin 1 OS=Rhizobium meliloti GN=groL1... [more]
CH60_THEM42.846e-5751.2760 kDa chaperonin OS=Thermosipho melanesiensis (st... [more]
CH60_DESVV2.846e-5750.4260 kDa chaperonin OS=Desulfovibrio vulgaris subsp.... [more]
CH60_DESVH2.846e-5750.4260 kDa chaperonin OS=Desulfovibrio vulgaris (strai... [more]
CH601_VIBCH2.846e-5751.6960 kDa chaperonin 1 OS=Vibrio cholerae GN=groL1 PE... [more]
CH60_ACICJ3.717e-5747.8860 kDa chaperonin OS=Acidiphilium cryptum (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC05065H11SK DroRLeaf1 Citrus clementina cDNA clone C05065H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295040 ID=CX295040; Name=CX295040; organism=Citrus clementina; type=EST; length=728bp
GAGGGATTGCTGCTCTTAAGCTCCTGGTTTTGGAGAGCGCAAGAGCCAGT
ACCTTGACGACATTGCTATTTTGACTGGAGGAACTGTAATCAGAGATGAG
GTGGGACTTGCCTTGGACAAAGTTGGCAAGGAGGTCCTAGGTAATGCTTC
TAAAGTTGTGCTCACAAAGGATACCACCACCATTGTGGGGGATGGCAGCA
CCCAGGATGCAGTGAGCAAACGAGTGGCGCAAATCAGAACTCTAATTGAG
AACGCTGAGCAAGACTATGAAAGGGAGAAGCTTAATGAAAGAATTGCTAA
ACTGTCAGGTGGTGTTGCTGTCATACAGGTTGGAGCTCAAACTGAGACAG
AGCTTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAG
GCTGCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAG
ACTCTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAG
AAAAGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAA
TTAATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGT
GCTTTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACT
ACGAAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGA
TGTTGCTTGGAGCATGCTTCCTCGGTGG
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