CX295040

Overview
NameCX295040
Unique NameCX295040
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:1119..1846. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH602_AZOC5 (60 kDa chaperonin 2 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=groL2 PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.717e-57
Identity = 116/236 (49.15%), Postives = 159/236 (67.37%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L DIAILTGG  I +++G+ L+ V   +LG A KVV+ K+ TTIV     +  +  RVAQI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KEKK RV+DAL+AT+AA            LLR    ++ +K  ++N ++K G DIV+RA+  P + I  NAG +GSVV  K+L ++ + +GYNA TG Y D++A+GIIDP KVVR  L+ A+S+
Sbjct:  278 APGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVNLSMLGRAKKVVIEKENTTIVDGNGEKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALLRAIKVLEGLK--VENTDQKTGIDIVRRAIQAPARQIVANAGDDGSVVVGKILENETYTFGYNAQTGEYVDMVASGIIDPAKVVRTALQDAASI 511          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH601_VIBVY (60 kDa chaperonin 1 OS=Vibrio vulnificus (strain YJ016) GN=groL1 PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.717e-57
Identity = 123/236 (52.12%), Postives = 160/236 (67.80%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L DIAILTGGTVI +EVGL L+K   E LG A +V +TK+ TTI+     +  +  RVAQIR  IE+A  DY++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R +SK+  ++   DN+E+ VG  +  RA+  PL+ I KNAG   SVV+  V + +   YGYNAATG Y D++  GI+DPTKV R  L+ A+SV
Sbjct:  278 APGFGDRRKAMLQDIAILTGGTVISEEVGLELEKATLEDLGQAKRVSITKENTTIIDGVGEEAMIQGRVAQIRQQIEDATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGIVAGGGVALIRAASKIVDLQG--DNEEQNVGIRVALRAMEAPLRQITKNAGDEESVVANNVRAGEG-SYGYNAATGVYGDMLEMGILDPTKVTRSALQFAASV 510          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH601_VIBVU (60 kDa chaperonin 1 OS=Vibrio vulnificus GN=groL1 PE=3 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 3.717e-57
Identity = 123/236 (52.12%), Postives = 160/236 (67.80%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L DIAILTGGTVI +EVGL L+K   E LG A +V +TK+ TTI+     +  +  RVAQIR  IE+A  DY++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R +SK+  ++   DN+E+ VG  +  RA+  PL+ I KNAG   SVV+  V + +   YGYNAATG Y D++  GI+DPTKV R  L+ A+SV
Sbjct:  278 APGFGDRRKAMLQDIAILTGGTVISEEVGLELEKATLEDLGQAKRVSITKENTTIIDGVGEEAMIQGRVAQIRQQIEDATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGIVAGGGVALIRAASKIVDLQG--DNEEQNVGIRVALRAMEAPLRQITKNAGDEESVVANNVRAGEG-SYGYNAATGVYGDMLEMGILDPTKVTRSALQFAASV 510          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_SULNB (60 kDa chaperonin OS=Sulfurovum sp. (strain NBC37-1) GN=groL PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.855e-57
Identity = 121/236 (51.27%), Postives = 162/236 (68.64%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+RK + L DIAILTG  VI +E+GL+LDK   + LG A +VV+ KD T IV       AV  RVA+I+  +EN   +Y++EKL ER+AKLSGGVAVI+VGA TETE+KEKK RV+DAL+ATKAA            L + S    A+K  L++D E VGA+I+ RA+  P+K IA+NAG +  VV++K+ ++     G+NAATG Y +++ AGIIDP KV R  L++A+SV
Sbjct:  277 APGFGDRKKEMLKDIAILTGANVITEELGLSLDKATLDDLGQAGRVVIDKDNTVIVDGKGDSAAVDARVAEIKIQVENTTSEYDKEKLQERLAKLSGGVAVIKVGAATETEMKEKKDRVDDALSATKAAVDEGIVIGGGAALAKASK---AVKLDLEHD-EAVGAEIILRAVYAPMKQIAQNAGFDAGVVADKIANNSEANLGFNAATGEYVNMLEAGIIDPLKVARVALQNATSV 508          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_RHOS5 (60 kDa chaperonin OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=groL PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.855e-57
Identity = 119/236 (50.42%), Postives = 158/236 (66.95%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L DIAILTGG VI +++G+ L+ V  ++LG A KV + KD TTIV     +  +  RV+QIRT IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KE+K RV+DALNAT+AA            L++    +D +  T +N ++  G  IV+RAL  PL+ IA+NAGV+GSVV+ KV  SD+  +G+NA T  Y D+   G+IDP KVVR  LE A+SV
Sbjct:  278 APGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRTQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEVEVKERKDRVDDALNATRAAVQEGIVVGGGVALIQAGKVLDGL--TGENPDQNAGITIVRRALEAPLRQIAQNAGVDGSVVAGKVRESDDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASV 511          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_RHOPA (60 kDa chaperonin OS=Rhodopseudomonas palustris GN=groL PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.855e-57
Identity = 119/236 (50.42%), Postives = 158/236 (66.95%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L DIAILTGG VI +++G+ L+ V  ++LG A KV + KD TTIV     +  +  RV+QIRT IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KE+K RV+DALNAT+AA            L++    +D +  T +N ++  G  IV+RAL  PL+ IA+NAGV+GSVV+ KV  SD+  +G+NA T  Y D+   G+IDP KVVR  LE A+SV
Sbjct:  278 APGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRTQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEVEVKERKDRVDDALNATRAAVQEGIVVGGGVALIQAGKVLDGL--TGENPDQNAGITIVRRALEAPLRQIAQNAGVDGSVVAGKVRESDDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASV 511          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_DESDG (60 kDa chaperonin OS=Desulfovibrio desulfuricans (strain G20) GN=groL PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.341e-57
Identity = 119/236 (50.42%), Postives = 155/236 (65.68%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFGER+   L+DIA LTGG VI +E+G+ L+      LGNA ++V+ K+ TTIV      +A+  RV  IR  IE    DY+REKL ER+AK+ GGVAVI VGA TETE+KEKK RVEDALNAT+AA            L+R    +D +K    +D+E  G  I++RA+  PL+ IA NAG  GS++ EKV       +G+NAATG +EDL+AAG+IDP KV R  L++A+SV
Sbjct:  278 APGFGERRKAMLEDIATLTGGRVISEEMGIKLENATVADLGNAKRIVVDKENTTIVDGAGESEAIKARVKMIRAQIEETSSDYDREKLQERLAKIVGGVAVINVGAATETEMKEKKDRVEDALNATRAAVEEGIVPGGGTALVRCCKVLDDVKPA--DDDEAAGVTIIRRAIEEPLRQIAANAGFEGSIICEKV-KEGKDAFGFNAATGEFEDLIAAGVIDPKKVSRIALQNAASV 510          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_CAUSK (60 kDa chaperonin OS=Caulobacter sp. (strain K31) GN=groL PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.341e-57
Identity = 117/236 (49.58%), Postives = 160/236 (67.80%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L+DIAILTG  VI +++G+ L+ V  ++LG A KV +TKD TTIV     + A+  R+ QI+  IE+   DY++EKL ER+AKL+GGVAVI+VG  TE E+KEKK RV+DALNAT+AA            LL+ S  +  +    DND++  G  IV+RAL  P++ IA+NAGV GS+V  K+L +D+  +G+NA T  Y DL+A G+IDP KVVR  L+ A+SV
Sbjct:  278 APGFGDRRKAMLEDIAILTGAQVISEDLGIKLENVSLDMLGKAKKVSITKDDTTIVDGVGEKTAIEARIGQIKKQIEDTTSDYDKEKLQERLAKLAGGVAVIRVGGSTEVEVKEKKDRVDDALNATRAAVEEGIVPGGGVALLKASKALATL--VGDNDDQTAGIAIVRRALQAPIRQIAENAGVEGSIVVGKILENDSPTFGFNAQTEQYVDLIADGVIDPAKVVRTALQDAASV 511          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH602_RHILE (60 kDa chaperonin 2 OS=Rhizobium leguminosarum GN=groL2 PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.341e-57
Identity = 117/236 (49.58%), Postives = 156/236 (66.10%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L+DIAILT GTVI +++G+ L+ V  ++LG A KV + K+ TTIV     +  +  RVAQI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KEKK RV+DAL+AT+AA            LLR    +DA+K    N +++VG DIV+RA+  P + IA+NAG  GSV+  K+       YG+NA TG Y DL A G+IDP KVVR  L+ A+S+
Sbjct:  278 APGFGDRRKAMLEDIAILTAGTVISEDLGIKLESVTLDMLGRAKKVSIEKENTTIVDGSGAKTDIEGRVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGSTEVEVKEKKDRVDDALHATRAAVEEGILPGGGVALLRAVKALDAVKTA--NGDQRVGVDIVRRAVEAPARQIAENAGAEGSVIVGKLREKSEFSYGWNAQTGEYGDLYAQGVIDPAKVVRTALQDAASI 511          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH601_RHOPS (60 kDa chaperonin 1 OS=Rhodopseudomonas palustris (strain BisB5) GN=groL1 PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.341e-57
Identity = 115/236 (48.73%), Postives = 160/236 (67.80%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L DIAILTGG  I +++G+ ++ V  ++LG A KV++ K+ TTIV     +  +  RVAQI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KE+K RV+DA++AT+AA            LLR S ++  IK    ND++K G +IV++AL  P + IA NAG +GSV+  KVL  D + YG+++ TG Y DL+  GIIDPTKVVR  +++A+SV
Sbjct:  278 APGFGDRRKAMLQDIAILTGGQAISEDLGIKMENVTLQMLGKAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEIEVKERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKRIK--TQNDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKVLEKDQYNYGFDSQTGEYGDLVKKGIIDPTKVVRTAIQNAASV 511          
The following BLAST results are available for this feature:
BLAST of CX295040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_AZOC53.717e-5749.1560 kDa chaperonin 2 OS=Azorhizobium caulinodans (s... [more]
CH601_VIBVY3.717e-5752.1260 kDa chaperonin 1 OS=Vibrio vulnificus (strain Y... [more]
CH601_VIBVU3.717e-5752.1260 kDa chaperonin 1 OS=Vibrio vulnificus GN=groL1 ... [more]
CH60_SULNB4.855e-5751.2760 kDa chaperonin OS=Sulfurovum sp. (strain NBC37-... [more]
CH60_RHOS54.855e-5750.4260 kDa chaperonin OS=Rhodobacter sphaeroides (stra... [more]
CH60_RHOPA4.855e-5750.4260 kDa chaperonin OS=Rhodopseudomonas palustris GN... [more]
CH60_DESDG6.341e-5750.4260 kDa chaperonin OS=Desulfovibrio desulfuricans (... [more]
CH60_CAUSK6.341e-5749.5860 kDa chaperonin OS=Caulobacter sp. (strain K31) ... [more]
CH602_RHILE6.341e-5749.5860 kDa chaperonin 2 OS=Rhizobium leguminosarum GN=... [more]
CH601_RHOPS6.341e-5748.7360 kDa chaperonin 1 OS=Rhodopseudomonas palustris ... [more]

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Properties
Property NameValue
Genbank descriptionC05065H11SK DroRLeaf1 Citrus clementina cDNA clone C05065H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295040 ID=CX295040; Name=CX295040; organism=Citrus clementina; type=EST; length=728bp
GAGGGATTGCTGCTCTTAAGCTCCTGGTTTTGGAGAGCGCAAGAGCCAGT
ACCTTGACGACATTGCTATTTTGACTGGAGGAACTGTAATCAGAGATGAG
GTGGGACTTGCCTTGGACAAAGTTGGCAAGGAGGTCCTAGGTAATGCTTC
TAAAGTTGTGCTCACAAAGGATACCACCACCATTGTGGGGGATGGCAGCA
CCCAGGATGCAGTGAGCAAACGAGTGGCGCAAATCAGAACTCTAATTGAG
AACGCTGAGCAAGACTATGAAAGGGAGAAGCTTAATGAAAGAATTGCTAA
ACTGTCAGGTGGTGTTGCTGTCATACAGGTTGGAGCTCAAACTGAGACAG
AGCTTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAG
GCTGCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAG
ACTCTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAG
AAAAGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAA
TTAATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGT
GCTTTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACT
ACGAAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGA
TGTTGCTTGGAGCATGCTTCCTCGGTGG
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