CX295051

Overview
NameCX295051
Unique NameCX295051
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295051_ssr11 microsatellite CX295051_ssr11:11..22. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig82 contig Ccv1_Contig82:147..874. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295051 vs. ExPASy Swiss-Prot
Match: MAO1_VIBCH (NAD-dependent malic enzyme OS=Vibrio cholerae GN=sfcA PE=3 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 2.421e-40
Identity = 84/179 (46.93%), Postives = 121/179 (67.60%), Query Frame = 3
Query:  192 PWTISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRP 728
            P  IS A G  LL  P  NKG AF+ +ER +  L GLLP A  + Q Q  +     R +E  + K++ +  +++ NE LFY+L+ +++ E++P++YTPTVG AC+ + +I+RR +GL+IS   + +I ++L N    +++VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P
Sbjct:    7 PLYISYA-GPALLSTPLLNKGSAFSAEERASFNLEGLLPEATETIQEQVVRAYQQYRGFESDMDKHIYLRNIQDTNETLFYRLVQNHISEMMPIIYTPTVGAACENFSNIYRRGRGLFISYANRDRIDDLLNNAANHNVKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISP 184          
BLAST of CX295051 vs. ExPASy Swiss-Prot
Match: MAO1_VIBC3 (NAD-dependent malic enzyme OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=sfcA PE=3 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 2.421e-40
Identity = 84/179 (46.93%), Postives = 121/179 (67.60%), Query Frame = 3
Query:  192 PWTISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRP 728
            P  IS A G  LL  P  NKG AF+ +ER +  L GLLP A  + Q Q  +     R +E  + K++ +  +++ NE LFY+L+ +++ E++P++YTPTVG AC+ + +I+RR +GL+IS   + +I ++L N    +++VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P
Sbjct:    7 PLYISYA-GPALLSTPLLNKGSAFSAEERASFNLEGLLPEATETIQEQVVRAYQQYRGFESDMDKHIYLRNIQDTNETLFYRLVQNHISEMMPIIYTPTVGAACENFSNIYRRGRGLFISYANRDRIDDLLNNAANHNVKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISP 184          
BLAST of CX295051 vs. ExPASy Swiss-Prot
Match: MAO1_SHEAM (NAD-dependent malic enzyme OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=sfcA PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.421e-40
Identity = 79/172 (45.93%), Postives = 117/172 (68.02%), Query Frame = 3
Query:  213 SGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRP 728
            +G  +L  P  NKG AFTE+ER    L GLLP A+ + + Q  +  +  R +   L K++ +  +++ NE LFY+L+ +N+ E++P++YTPTVG AC+++   +RR +GL+IS   K +I ++L N     +++IVVTDGERILGLGD G  GMGIP+GKL+LYT+ GGI P
Sbjct:   13 AGPAILEAPLINKGSAFTEEERIFFNLEGLLPYAIETIEEQASRAYDQFRSFNNDLDKHIYLRNIQDTNETLFYRLVQNNIAEMMPIIYTPTVGLACERFSKNYRRNRGLFISYPNKDRIDDILNNSTRHKVKIIVVTDGERILGLGDQGIGGMGIPIGKLSLYTSCGGISP 184          
BLAST of CX295051 vs. ExPASy Swiss-Prot
Match: MAO1_ENT38 (NAD-dependent malic enzyme OS=Enterobacter sp. (strain 638) GN=sfcA PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.421e-40
Identity = 79/172 (45.93%), Postives = 122/172 (70.93%), Query Frame = 3
Query:  213 SGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRP 728
            +G  LL  P  NKG AF+ +ER +  L GLLP  V + + Q ++     + ++  + K++ +  +++ NE LFY+L+ +++EE++PV+YTPTVG AC+++  I+RR +G++IS + +  + ++L+N P  +I+VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P
Sbjct:   16 AGPVLLEFPLLNKGSAFSAEERSSFNLLGLLPEVVETIEEQAERAWIQYQGFKTEIDKHIYLRNIQDTNETLFYRLVQNHLEEMMPVIYTPTVGAACERFSEIYRRSRGVFISYENRHNMDDILQNVPNHNIKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISP 187          
BLAST of CX295051 vs. ExPASy Swiss-Prot
Match: MAO12_VIBVY (NAD-dependent malic enzyme 2 OS=Vibrio vulnificus (strain YJ016) GN=sfcA2 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.421e-40
Identity = 78/172 (45.35%), Postives = 117/172 (68.02%), Query Frame = 3
Query:  213 SGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRP 728
            +G  LL  P  NKG AFT +ER    L GLLP  + +   Q  +       +   ++K++ +  +++ NE L+++L+  ++EE++P++YTPTVGEACQK+  I+RR +GL++S +++ ++  +L N P   ++VIV+TDGERILGLGD G  GMGIP+GKLALYTA GGI P
Sbjct:   10 AGNTLLNTPLLNKGSAFTLEERKNFNLIGLLPANIETIDEQVSRAYEQFSLFNSAMEKHIYLRNIQDTNETLYFRLINQHIEEMMPIIYTPTVGEACQKFSQIYRRNRGLFLSFEDQDELEAILNNAPNTHVKVIVITDGERILGLGDQGIGGMGIPIGKLALYTACGGISP 181          
BLAST of CX295051 vs. ExPASy Swiss-Prot
Match: MAO11_PHOPR (NAD-dependent malic enzyme 1 OS=Photobacterium profundum GN=sfcA1 PE=3 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 2.421e-40
Identity = 79/172 (45.93%), Postives = 121/172 (70.35%), Query Frame = 3
Query:  213 SGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRP 728
            +G  LL  P  NKG AF+ +ER    L GLLP A+ S + Q ++     ++++  + K++ +  +++ NE LFY+L+ +++ E++P++YTPTVG AC+ + +I+RR +GL+IS   + +I ++L N   ++++VIVVTDGERILGLGD G  GMGIP+GKLALYTA GGI P
Sbjct:   13 AGPALLETPLLNKGSAFSIEERMFFNLEGLLPEAIESIEEQTERAYQQYQKFDKDMDKHIYLRNIQDTNETLFYRLVENHITEMMPIIYTPTVGAACEDFSNIYRRGRGLFISYPNRDRIEDMLNNASRQNVKVIVVTDGERILGLGDQGIGGMGIPIGKLALYTACGGISP 184          
BLAST of CX295051 vs. ExPASy Swiss-Prot
Match: MAO1_SODGM (NAD-dependent malic enzyme OS=Sodalis glossinidius (strain morsitans) GN=sfcA PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.162e-40
Identity = 79/172 (45.93%), Postives = 121/172 (70.35%), Query Frame = 3
Query:  213 SGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRP 728
            +G  LL  P  NKG AF+ +ERD   L+GLLP  V + + Q ++     + +   + +++ +  +++ NE LFY+LL  ++ E+LP++YTPTVG+AC+++  I+RR +G++IS     KI ++L+N  +++++VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P
Sbjct:   16 AGPILLEFPLLNKGSAFSLEERDNFNLQGLLPDTVETIEEQAERAWRQYQDFRTNIDRHIYLRNIQDTNETLFYRLLAAHLAEMLPIIYTPTVGDACERFSDIYRRARGVFISYNNCDKIEDMLQNATKQNVKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISP 187          
BLAST of CX295051 vs. ExPASy Swiss-Prot
Match: MAO1_PROMH (NAD-dependent malic enzyme OS=Proteus mirabilis (strain HI4320) GN=sfcA PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.162e-40
Identity = 81/172 (47.09%), Postives = 119/172 (69.19%), Query Frame = 3
Query:  213 SGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRP 728
            +G  LL  P  NKG AF+E+ER    L GLLP AV + + Q ++       ++    K++ +  +++ NE LFY+LL  ++ E++P++YTPTVGEAC+ +  I+RR +GL+IS   +  I ++L+N  +++++VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P
Sbjct:   16 AGPILLEFPLLNKGSAFSEEERSTFNLHGLLPEAVETIEEQVERAYRQYLDFKNDNDKHIYLRNIQDTNETLFYRLLESHLTEMMPIIYTPTVGEACEHFSDIYRRARGLFISYPNRANIDDMLQNATKQNVKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISP 187          
BLAST of CX295051 vs. ExPASy Swiss-Prot
Match: MAO1_VIBPA (NAD-dependent malic enzyme OS=Vibrio parahaemolyticus GN=sfcA PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.393e-40
Identity = 77/172 (44.77%), Postives = 118/172 (68.60%), Query Frame = 3
Query:  213 SGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRP 728
            +G  L+  P  NKG AF+ +ER +  L GLLP    + Q Q ++     + +E  + K++ +  +++ NE LFY+L+ +++ E++P++YTPTVG AC+ + +I+RR +GL+IS   + +I ++L N    +++VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P
Sbjct:   13 AGPALMATPLLNKGSAFSAEERSSFNLEGLLPETTETIQEQVERAYQQYKSFESDMDKHIYLRNIQDTNETLFYRLVQNHISEMMPIIYTPTVGAACENFSNIYRRGRGLFISYPNRDRIDDLLNNAANHNVKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISP 184          
BLAST of CX295051 vs. ExPASy Swiss-Prot
Match: MAO1_SALG2 (NAD-dependent malic enzyme OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=sfcA PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.393e-40
Identity = 80/172 (46.51%), Postives = 120/172 (69.77%), Query Frame = 3
Query:  213 SGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRP 728
            +G  LL  P  NKG AF+ +ER    L GLLP  V S + Q ++     + ++  + K++ +  +++ NE LFY+L+ +++EE++PV+YTPTVG AC+++  I+RR +G++IS   +  + ++L+N P  +I+VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P
Sbjct:   16 AGPVLLEFPLLNKGSAFSAEERRNFNLSGLLPEVVESIEEQAERAWLQYQGFKTEIDKHIYLRNIQDTNETLFYRLVQNHLEEMMPVIYTPTVGAACERFSEIYRRARGVFISYPNRHNMDDILQNVPNHNIKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISP 187          
The following BLAST results are available for this feature:
BLAST of CX295051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
MAO1_VIBCH2.421e-4046.93NAD-dependent malic enzyme OS=Vibrio cholerae GN=s... [more]
MAO1_VIBC32.421e-4046.93NAD-dependent malic enzyme OS=Vibrio cholerae sero... [more]
MAO1_SHEAM2.421e-4045.93NAD-dependent malic enzyme OS=Shewanella amazonens... [more]
MAO1_ENT382.421e-4045.93NAD-dependent malic enzyme OS=Enterobacter sp. (st... [more]
MAO12_VIBVY2.421e-4045.35NAD-dependent malic enzyme 2 OS=Vibrio vulnificus ... [more]
MAO11_PHOPR2.421e-4045.93NAD-dependent malic enzyme 1 OS=Photobacterium pro... [more]
MAO1_SODGM3.162e-4045.93NAD-dependent malic enzyme OS=Sodalis glossinidius... [more]
MAO1_PROMH3.162e-4047.09NAD-dependent malic enzyme OS=Proteus mirabilis (s... [more]
MAO1_VIBPA5.393e-4044.77NAD-dependent malic enzyme OS=Vibrio parahaemolyti... [more]
MAO1_SALG25.393e-4046.51NAD-dependent malic enzyme OS=Salmonella gallinaru... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05068A10SK DroRLeaf1 Citrus clementina cDNA clone C05068A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295051 ID=CX295051; Name=CX295051; organism=Citrus clementina; type=EST; length=728bp
AGGGAGTGAGTGTTTGTTTGTTTTCGTTTTTGTGAAAAGCAGAAAAAGTA
AAAAGAGTGAGAATGGAGAGCACCATGAAGGAGATGAGAGACGGAGCTTC
GGTTCTCGACTTCGACTCGAAATCCACCGTCGAAGGCGGCGTTGAAGACG
TCTACGGTGAGGATCGTGCCACCGAGGACCAGCTCGTCACTCCCTGGACC
ATCTCTGTTGCCAGCGGGTACTGTTTGTTGAGGGATCCACGCCATAACAA
AGGGCTTGCTTTCACTGAGAAAGAGAGGGATGCCCACTACTTGCGCGGCC
TTTTGCCTCCAGCTGTTATAAGTCAACAACTTCAGGAGAAGAAATTGATG
AACAGCATCAGACAATATGAAGTTCCGCTGCAAAAATATGTGGCCATGAT
GGAACTTGAGGAGAGAAATGAAAGACTGTTCTATAAGCTACTGATTGATA
ATGTTGAGGAACTTCTCCCAGTCGTTTACACTCCAACTGTTGGTGAAGCT
TGCCAGAAATATGGAAGTATCTTCAGGCGTCCTCAGGGTCTATACATAAG
TCTGAAAGAGAAGGGAAAGATTCTTGAGGTTTTGAAGAACTGGCCTGAAA
GGAGTATTCAGGTTATTGTTGTCACAGATGGTGAGCGCATTTTGGGACTT
GGGGATCTTGGCTGTCAGGGGATGGGAATTCCTGTTGGGAAATTGGCTTT
GTACACAGCACTTGGAGGCATTCGTCCC
back to top