CX295065

Overview
NameCX295065
Unique NameCX295065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14459 contig Ccv1_Contig14459:225..917. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MEF2_DROME (Myocyte-specific enhancer factor 2 OS=Drosophila melanogaster GN=Mef2 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.093e-14
Identity = 39/91 (42.86%), Postives = 63/91 (69.23%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQK--KTKDIGINSKIVEDHSQH 450
            M R K Q+ RI +  +RQVTF+KR+ G++KKA+ELSVLCD E+ALIIFS   KLY+++S  +++ + +Y +  +  +   N  I+E  +++
Sbjct:    1 MGRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQYASTDMDRVLLKYTEYNEPHESLTNKNIIEKENKN 91          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MEF2D_XENLA (Myocyte-specific enhancer factor 2D homolog OS=Xenopus laevis GN=mef2d PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 39/86 (45.35%), Postives = 62/86 (72.09%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQK--KTKDIGINSKIVE 435
            M R K Q++RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+ALIIF+   KL++++S  ++K + +Y +  +  +   N+ I+E
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYNEPHESRTNADIIE 86          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MEF2D_RAT (Myocyte-specific enhancer factor 2D OS=Rattus norvegicus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 39/86 (45.35%), Postives = 62/86 (72.09%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQK--KTKDIGINSKIVE 435
            M R K Q++RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+ALIIF+   KL++++S  ++K + +Y +  +  +   N+ I+E
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYNEPHESRTNADIIE 86          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MEF2D_MOUSE (Myocyte-specific enhancer factor 2D OS=Mus musculus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 39/86 (45.35%), Postives = 62/86 (72.09%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQK--KTKDIGINSKIVE 435
            M R K Q++RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+ALIIF+   KL++++S  ++K + +Y +  +  +   N+ I+E
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYNEPHESRTNADIIE 86          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MEF2D_HUMAN (Myocyte-specific enhancer factor 2D OS=Homo sapiens GN=MEF2D PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 39/86 (45.35%), Postives = 62/86 (72.09%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQK--KTKDIGINSKIVE 435
            M R K Q++RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+ALIIF+   KL++++S  ++K + +Y +  +  +   N+ I+E
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYNEPHESRTNADIIE 86          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: AGL62_ARATH (Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.315e-13
Identity = 50/166 (30.12%), Postives = 87/166 (52.41%), Query Frame = 1
Query:  190 RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERY------------QKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKR-----KLLG----DGLEPCTIDELQQLENQLERSLSRIRARKNQLFR 624
            R K +M +++N ++ QVTFSKRR+GL KKA EL  LC AEVA+++FSP  K++ F   +++  I+R+              + ++   NS IV+D + H  +  S + T+ +  +  K+     K LG    D +E   + +L+  +  LE     +    ++ F+
Sbjct:    8 RQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSFGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNS-IVQDLNNHLTQVLSQLETEKKKYDELKKIREKTKALGNWWEDPVEELALSQLEGFKGNLENLKKVVTVEASRFFQ 172          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MEF2B_HUMAN (Myocyte-specific enhancer factor 2B OS=Homo sapiens GN=MEF2B PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.950e-13
Identity = 46/121 (38.02%), Postives = 70/121 (57.85%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLG-DG--LEP 537
            M R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+ALIIF+   +L++++S  +++ + +Y + +                   E     T  + LE  KR+ +G DG  LEP
Sbjct:    1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTDMDRVLLKYTEYS-------------------EPHESRTNTDILETLKRRGIGLDGPELEP 102          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MEF2B_MOUSE (Myocyte-specific enhancer factor 2B OS=Mus musculus GN=Mef2b PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.343e-12
Identity = 33/69 (47.83%), Postives = 53/69 (76.81%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERY 390
            M R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD ++ALIIF+   +L++++S  +++ + +Y
Sbjct:    1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCDIALIIFNSAQRLFQYASSDMDRVLLKY 69          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: AGL61_ARATH (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.659e-11
Identity = 44/130 (33.85%), Postives = 64/130 (49.23%), Query Frame = 1
Query:  157 ETFRSRRVKMV-RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETS---NMMTKLEFLEVAKRKLLGDGLE 534
            +T  S++ + + R K  M +I+  + RQVTFSKRR GL KKA EL  LC AE+ +I+FSP  K + F   S+   ++RY  +      N  + +          S   NM       EV + K  G  +E
Sbjct:   52 KTMMSKKKESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGHPSVESVLDRYVSRN-----NMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAME 176          
The following BLAST results are available for this feature:
BLAST of CX295065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
MEF2_DROME6.093e-1442.86Myocyte-specific enhancer factor 2 OS=Drosophila m... [more]
MEF2D_XENLA7.958e-1445.35Myocyte-specific enhancer factor 2D homolog OS=Xen... [more]
MEF2D_RAT7.958e-1445.35Myocyte-specific enhancer factor 2D OS=Rattus norv... [more]
MEF2D_MOUSE7.958e-1445.35Myocyte-specific enhancer factor 2D OS=Mus musculu... [more]
MEF2D_HUMAN7.958e-1445.35Myocyte-specific enhancer factor 2D OS=Homo sapien... [more]
AGL62_ARATH2.315e-1330.12Agamous-like MADS-box protein AGL62 OS=Arabidopsis... [more]
MEF2B_HUMAN3.950e-1338.02Myocyte-specific enhancer factor 2B OS=Homo sapien... [more]
MEF2B_MOUSE3.343e-1247.83Myocyte-specific enhancer factor 2B OS=Mus musculu... [more]
AGL61_ARATH1.659e-1133.85Agamous-like MADS-box protein AGL61 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionC05068B12SK DroRLeaf1 Citrus clementina cDNA clone C05068B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295065 ID=CX295065; Name=CX295065; organism=Citrus clementina; type=EST; length=692bp
TCTAGGGCTTCTCAAGATTTTATTGCAAGAGAAATTTCTATAATTATCAT
TGTCTCTCTTGTTCATCCACTGGAGCTTTCACAGACCCATCGAATCTCTT
TTTCAGCACTTTCCTAATTTGTTTTTATTTCAGTTTATTCTCTCATTCTA
TCTTTGGAAACTTTTAGGAGTAGGAGAGTGAAAATGGTGAGGGGCAAAAC
CCAGATGAAGAGAATAGAAAATGCAACAAGCAGGCAAGTTACTTTCTCAA
AGCGAAGAAATGGGCTGCTCAAAAAGGCCTTTGAGTTATCGGTTCTTTGT
GATGCCGAAGTTGCACTAATTATCTTCTCCCCCAGAGGCAAGCTCTACGA
GTTCTCTAGTTGTAGTATTAACAAGACCATAGAACGCTATCAGAAGAAAA
CCAAAGATATTGGAATCAACTCCAAAATAGTAGAAGATCATTCACAGCAT
GCCAAGGAAGAGACTTCAAACATGATGACGAAGCTTGAGTTTCTTGAAGT
GGCCAAAAGAAAACTCCTTGGAGATGGACTGGAGCCATGTACAATTGATG
AGCTACAACAGTTAGAGAACCAGTTGGAACGAAGCTTAAGCAGAATTAGG
GCAAGAAAGAATCAGCTCTTCAGAGAACAAATTGAGAAGCTGAAAGAAAA
GGAAAAAATCCTCATTGAAAGAAATACGAAGCTGCGAGAGCA
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