CX295067

Overview
NameCX295067
Unique NameCX295067
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295067 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.632e-32
Identity = 83/205 (40.49%), Postives = 105/205 (51.22%), Query Frame = 3
Query:    3 DAFITALNSYPEFGRTDTN----REVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSALN---------------QGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 500
            DAF+ A  ++P FG T +     REVAAF A  +HETT              +C+ +E+     +CT S Q+PCA GK YYGRGPIQL+ N NY  AGRAIG D L +P+ VA D  +SFKTA+WFWMT        H+ +                 GFG     +NG  ECG     +V DR+  Y  YC    V  G  L+C
Sbjct:  110 DAFVAAAGAFPGFGTTGSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILRVGYGNNLDC 314          
BLAST of CX295067 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 139.428 bits (350), Expect = 1.632e-32
Identity = 85/205 (41.46%), Postives = 107/205 (52.20%), Query Frame = 3
Query:    3 DAFITALNSYPEFGRT---DTN-REVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSALN---------------QGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 500
            DAF+ A +++  FG T   DT  REVAAF A  +HETT              +C+ +E+     +CT S Q+PCA GK YYGRGPIQL+ N NY  AGRAIG D L +P+ VA D  +SFKTA+WFWMT        H+ +                 GFG     +NG  ECG     +V DR+  Y  YC   GV  G  L+C
Sbjct:  107 DAFVAAASAFRGFGTTGGTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDC 311          
BLAST of CX295067 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.637e-32
Identity = 87/205 (42.44%), Postives = 102/205 (49.76%), Query Frame = 3
Query:    3 DAFITALNSYPEFGRTDTN----REVAAFFAHVTHETTD--------------FCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT---------------YVHSALNQ------GFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 500
            DAFI A  S+P F  T  +    REVAAF A  +HETT               +CY  E N AD     P YPCA GK Y+GRGP+QLT N NY   GRAIG D LN+P+ +A D  ISFK+A WFWMT               +  S  +Q      GFG     ING  ECG     +V DR+  Y  YC   GV  G  L+C
Sbjct:  102 DAFIAAAKSFPAFATTGDDATRKREVAAFLAQTSHETTGGAGWAAPDGPYTWGYCYNRELNPADYCQWDPNYPCAPGKQYFGRGPMQLTWNYNYGQCGRAIGVDLLNNPDLLATDPTISFKSAFWFWMTPQSPKPSCHDVIIGAWSPSGSDQAAGRVPGFGLITNIINGGLECGQGWNAKVEDRIGFYKRYCDTLGVGYGNNLDC 306          
BLAST of CX295067 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.357e-31
Identity = 83/206 (40.29%), Postives = 101/206 (49.03%), Query Frame = 3
Query:    3 DAFITALNSYPEFGRTDTN----REVAAFFAHVTHETTD--------------FCYIEEKNKADPHCTS-PQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSAL---------------NQGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 500
            DAFI A  S+P F  T       RE+AAF A  +HETT               +CY  E N    +C S P YPCA GK Y+GRGP+QL+ N NY   GRAIG D LN+P+ ++ D  ISFK+A WFWMT        H+ +                 G+G     ING  ECG     QV DR+  Y  YC   GV  G  L+C
Sbjct:   82 DAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWAAPDGPYAWGYCYNRELNPPSSYCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRATGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDC 287          
BLAST of CX295067 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.079e-31
Identity = 83/206 (40.29%), Postives = 101/206 (49.03%), Query Frame = 3
Query:    3 DAFITALNSYPEFGRTDTN----REVAAFFAHVTHETTD--------------FCYIEEKNKADPHCTS-PQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSAL---------------NQGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 500
            DAFI A  S+P F  T       RE+AAF A  +HETT               +CY  E N    +C S P YPCA GK Y+GRGP+QL+ N NY   GRAIG D LN+P+ ++ D  ISFK+A WFWMT        H+ +                 G+G     ING  ECG     QV DR+  Y  YC   GV  G  L+C
Sbjct:  104 DAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWAAPDGPYAWGYCYNRELNPPSSYCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRVPGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDC 309          
BLAST of CX295067 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.858e-31
Identity = 82/207 (39.61%), Postives = 104/207 (50.24%), Query Frame = 3
Query:    3 DAFITALNSYPEFGRTDT----NREVAAFFAHVTHETTD-------------FCYIEEKNK---ADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSALN---------------QGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 500
            DAF+ A N++P F  T       REVAAF A  +HETT              +C+ EE N    +D    S Q+PCA GK YYGRGPIQ++ N NY  AG+AIG + L++P+ VA D  +SFKTA WFWMT        H+ +                 G+G     ING  ECG     +V DR+  Y  YC   GV  G  L+C
Sbjct:  109 DAFVAAANAFPSFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNGNVGSDYCVQSSQWPCAAGKKYYGRGPIQISYNYNYGPAGQAIGSNLLSNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVMTGQWTPNGNDQAAGRVPGYGVVTNIINGGVECGHGADSRVADRIGFYKRYCDMLGVSYGANLDC 315          
BLAST of CX295067 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.957e-31
Identity = 80/205 (39.02%), Postives = 102/205 (49.76%), Query Frame = 3
Query:    6 AFITALNSYPEFGRTDT----NREVAAFFAHVTHETTD-------------FCYIEEKNKADPHC--TSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT---------------------YVHSALNQGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 500
            +F+ A   +P F  T       REVAAF A ++HETT               CY EE N    +C  T  Q+PC  GK Y+GRGPIQ++ N NY  AG+A+GFDGL +PE VA    I+F+TALWFWMT                      V +    GFG     +NG  EC      +V +R+  Y  YC+  GVD GP L+C
Sbjct:   80 SFVRAATRFPRFAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDKQWPCYPGKSYHGRGPIQISWNFNYGPAGQALGFDGLRNPEIVANCSDIAFQTALWFWMTPRDTKPSCHQVMVGEYRPGPADVAANRTAGFGLVTNIVNGGLECNRAGDARVNNRIGFYRRYCQVLGVDVGPNLDC 284          
BLAST of CX295067 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.606e-30
Identity = 87/208 (41.83%), Postives = 106/208 (50.96%), Query Frame = 3
Query:    3 DAFITALNSYPEF----GRTDTN-REVAAFFAHVTHETTD-------------FCYIEEKNKA--DPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT---------------YVHSALNQ------GFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 500
            DAF+ A +++P F    G  DTN REVAAF A  +HETT              +C+ EE   A    +C  S Q+PCA GK YYGRGPIQL+ N NY  AG+AIG D L  P+ VA D  +SF TA WFWMT               +  SA +Q      G+G     ING  ECG    D+V DR+  Y  YC   GV     L+C
Sbjct:  111 DAFVAAASAFPGFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQWPCAAGKKYYGRGPIQLSYNFNYGPAGQAIGADLLGDPDLVASDATVSFDTAFWFWMTPQSPKPSCHAVATGQWTPSADDQAAGRVPGYGVITNIINGGLECGHGEDDRVADRIGFYKRYCDILGVSYDANLDC 318          
BLAST of CX295067 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.806e-30
Identity = 81/205 (39.51%), Postives = 103/205 (50.24%), Query Frame = 3
Query:    3 DAFITALNSYPEFGRTDTN----REVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSALN---------------QGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 500
            DA +TA  ++P+F  T  +    REVAAF    +HETT              +C+ EE      +C  S ++PCA  K Y+GRGPIQL+ N NY  AG AIG D LN+PE VA D V+SFKTALWFWMT        H  +                 G+G     ING  ECG    D+V +R+  Y  YC   G+  G  L+C
Sbjct:  116 DALVTAAAAFPDFAATGDDEARKREVAAFLGQTSHETTGGWATAPDGPYSWGYCFKEEIGATASYCVPSAEWPCAPDKKYFGRGPIQLSYNYNYGPAGEAIGEDLLNNPELVASDPVVSFKTALWFWMTPQSPKPSCHDVITGQWTPSSGDIAAGRVPGYGVITNIINGGLECGFGPDDRVANRIGFYQRYCDVLGIGYGSNLDC 320          
BLAST of CX295067 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.806e-30
Identity = 81/192 (42.19%), Postives = 105/192 (54.69%), Query Frame = 3
Query:    3 DAFITALNSYPEFGRT-DTN---REVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT---------------YVHSALNQ------GFGETIRKINGPAECGGRNRDQVLDRVRRYTDYC 461
            +AFI A  S+  FG T DT    RE+AAFFA  +HETT              +C++ E+     +CT S Q+PCA G+ Y+GRGPIQ++ N NY   GRAIG D LN+P+ VA D VISFK+A+WFWMT               +  SA ++      GFG     ING  ECG  +  +V DR+  Y  YC
Sbjct:  109 NAFINAARSFGGFGTTGDTTARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVIIGRWQPSAADRAANRLPGFGVITNIINGGLECGRGSDSRVQDRIGFYRRYC 300          
The following BLAST results are available for this feature:
BLAST of CX295067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIA_SECCE1.632e-3240.49Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI1_HORVU1.632e-3241.4626 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHI1_THECC3.637e-3242.44Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHI2_GOSHI2.357e-3140.29Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI1_GOSHI3.079e-3140.29Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI1_ORYSJ6.858e-3139.61Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI10_ORYSJ8.957e-3139.02Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI12_ORYSJ2.606e-3041.83Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI9_ORYSJ5.806e-3039.51Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_SOLTU5.806e-3042.19Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]

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Properties
Property NameValue
Genbank descriptionC05068C02SK DroRLeaf1 Citrus clementina cDNA clone C05068C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295067 ID=CX295067; Name=CX295067; organism=Citrus clementina; type=EST; length=678bp
GAGATGCATTTATTACTGCTCTCAATTCGTATCCTGAATTTGGCAGAACT
GATACTAATCGTGAAGTGGCAGCATTTTTTGCCCATGTCACTCATGAAAC
AACAGATTTTTGCTACATAGAAGAGAAGAATAAAGCAGATCCTCATTGTA
CATCTCCACAATACCCATGTGCCAATGGTAAATTCTACTACGGCCGGGGA
CCGATTCAGCTCACCGGAAATGGAAACTACATAGACGCCGGAAGGGCCAT
CGGTTTCGACGGTCTGAACTCTCCGGAAACGGTAGCCAGGGACCGTGTCA
TATCTTTCAAGACCGCTTTGTGGTTTTGGATGACATACGTGCACTCAGCA
CTAAACCAAGGTTTTGGTGAAACAATTCGGAAAATTAATGGTCCTGCTGA
ATGCGGTGGCCGAAACCGTGACCAAGTTCTGGATCGTGTTAGGCGTTACA
CTGATTATTGCAAAAGATTTGGTGTTGATCCTGGACCACGTCTTGAATGC
TGAATAGATATTTTGTACAAAAAATATTACAGTATATGTATTATATTGTA
TCACAATAAGCCAGAGTTATTTCAAACAACTTTCTCTGTTTGGTAACTCT
GACGGAATAATTTTCTTGTACCTGATCATGAAATAAAGAGAAAAATAATG
GATAATTAAAAAAAAAAAAAAAAAAAAA
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