CX295084

Overview
NameCX295084
Unique NameCX295084
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length622
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 1.137e-34
Identity = 87/203 (42.86%), Postives = 110/203 (54.19%), Query Frame = 1
Query:    1 FITALNSYPAFGRT-DT---NREVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSALN---------------QGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            FITA  S+P FG T DT    +EVAAFF   +HETT              +C+ +E+N A  +C  S  +PCA+GK YYGRGP+QL+ N NY   GRAIG D LN+P+ VA D VI+FK A+WFWMT        H+ +                 G+G     ING  ECG     +V DR+  Y  YC  FGV+PG  L+C
Sbjct:  118 FITAAKSFPGFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPASDYCEPSATWPCASGKRYYGRGPMQLSWNYNYGLCGRAIGVDLLNNPDLVANDAVIAFKAAIWFWMTAQPPKPSCHAVIAGQWQPSDADRAAGRLPGYGVITNIINGGLECGRGQDGRVADRIGFYQRYCNIFGVNPGGNLDC 320          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.534e-34
Identity = 90/204 (44.12%), Postives = 109/204 (53.43%), Query Frame = 1
Query:    1 FITALNSYPAFGRT---DT-NREVAAFFAHVTHETTD-------------FCYIEEKN-KADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT---------------YVHSALNQ------GFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            F+ A N+YP F  T   DT  REVAAF A  +HETT              +C+ EE N  A  +C   P++PCA GK YYGRGPIQ+T N NY  AG+AIG D LN+P+ VA D  +SFKTA WFWMT               +  SA +Q      G+GE    ING  ECG    D+V DR+  Y  YC   GV  G  L+C
Sbjct:  108 FVAAANAYPDFATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYCEPKPEWPCAAGKKYYGRGPIQITYNYNYGPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVITGQWTPSADDQAAGRVPGYGEITNIINGGVECGHGADDKVADRIGFYKRYCDMLGVSYGDNLDC 311          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.534e-34
Identity = 84/203 (41.38%), Postives = 109/203 (53.69%), Query Frame = 1
Query:    1 FITALNSYPAFGRTDT----NREVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT---------------YVHSALNQ------GFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            FI+A  S+P FG T       RE+AAFFA  +HETT              +C++ E+     +CT S Q+PCA G+ Y+GRGPIQ++ N NY   GRAIG D LN+P+ VA D +ISFK+A+WFWMT               +  S  +Q      GFG     ING  ECG  +  +V DR+  Y  YC   GV PG  L+C
Sbjct:   99 FISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLREQGSPGDYCTPSNQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSIISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGTDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDC 301          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.309e-34
Identity = 87/203 (42.86%), Postives = 108/203 (53.20%), Query Frame = 1
Query:    1 FITALNSYPAFGRT-DTN---REVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT-------------------YVHSALNQ--GFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            FI A  S+P FG + D N   RE+AAFFA  +HETT              +C++ E+     +C  S Q+PCA G+ Y+GRGPIQ++ N NY   GRAIG D LN+P+ VA D VISFKTALWFWMT                       A N+  GFG     ING  ECG    ++V DR+  Y  YC   GV PG  L+C
Sbjct:  111 FINAARSFPGFGTSGDINARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLRERGNPGDYCPPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVIIGRWNPSSADRAANRLPGFGVITNIINGGLECGRGTDNRVQDRIGFYRRYCSILGVTPGDNLDC 313          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.309e-34
Identity = 86/203 (42.36%), Postives = 106/203 (52.22%), Query Frame = 1
Query:    1 FITALNSYPAFGR----TDTNREVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT-------------------YVHSALNQ--GFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            FI A  S+P FG     T   RE+AAFFA  +HETT              +C++ E+     +CT S Q+PCA G+ Y+GRGPIQ++ N NY   GRAIG D LN+P+ VA D VISFK+ALWFWMT                       A N+  GFG     ING  ECG     +V DR+  Y  YC   GV PG  L+C
Sbjct:  107 FINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSSADRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDC 309          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.322e-34
Identity = 84/203 (41.38%), Postives = 108/203 (53.20%), Query Frame = 1
Query:    1 FITALNSYPAFGRTDT----NREVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT---------------YVHSALNQ------GFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            F+TA  S+P FG T       RE+AAF A  +HETT              +C++ E+     +CT S Q+PCA G+ Y+GRGPIQ++ N NY   GRAIG D LN+P+ VA D VISFK+A+WFWMT               +  S  +Q      GFG     ING  ECG  +  +V DR+  Y  YC   GV PG  L+C
Sbjct:  105 FVTAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGENLDC 307          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 5.645e-34
Identity = 86/203 (42.36%), Postives = 108/203 (53.20%), Query Frame = 1
Query:    1 FITALNSYPAFGR----TDTNREVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT---------------YVHSALNQ------GFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            FI A  S+P FG     T   RE+AAFFA  +HETT              +C++ E+     +CT S Q+PCA G+ Y+GRGPIQ++ N NY   GRAIG D LN+P+ VA D VISFK+ALWFWMT               +  SA ++      GFG     ING  ECG     +V DR+  Y  YC   GV PG  L+C
Sbjct:  112 FINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSAGDRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDC 314          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.373e-34
Identity = 84/203 (41.38%), Postives = 108/203 (53.20%), Query Frame = 1
Query:    1 FITALNSYPAFGRTDT----NREVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT---------------YVHSALNQ------GFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            FI+A  S+P FG T       RE+AAF A  +HETT              +C++ E+     +CT S Q+PCA G+ Y+GRGPIQ++ N NY   GRAIG D LN+P+ VA D VISFK+A+WFWMT               +  S  +Q      GFG     ING  ECG  +  +V DR+  Y  YC   GV PG  L+C
Sbjct:  101 FISAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPSAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDC 303          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.258e-33
Identity = 85/203 (41.87%), Postives = 106/203 (52.22%), Query Frame = 1
Query:    1 FITALNSYPAFGRTDTN----REVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSALN---------------QGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            F+ A N++P FG T +     R+VAAF A  +HETT              +C+ +E+  A  +CT S Q+PCA GK YYGRGPIQL+ N NY  AGRAIG D L +P+ VA D  +SFKTALWFWMT        H+ +                 GFG     ING  ECG     +V DR+  Y  YC   GV  G  L+C
Sbjct:   57 FVAAANAFPGFGATGSTDARKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSPSGADRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGVGYGDNLDC 259          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.659e-33
Identity = 82/203 (40.39%), Postives = 110/203 (54.19%), Query Frame = 1
Query:    1 FITALNSYPAFGRT-DT---NREVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSAL---------------NQGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            FI A  S+P FG T DT    +E+AAFF   +HETT              +C+ +E+N +  +C+ S ++PCA+GK YYGRGP+QL+ N NY   GRAIG D LN+P+ V+ D VI+FK A+WFWMT        H+ +                 G+G     ING  ECG     +V DR+  Y  YC   GV+PG  L+C
Sbjct:  103 FINAAKSFPGFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPSSNYCSPSAEWPCASGKSYYGRGPMQLSWNYNYGQCGRAIGSDLLNNPDLVSNDPVIAFKAAIWFWMTPQSPKPSCHAVIVGQWQPSDADRAAGRVPGYGVITNIINGGLECGRGQDARVADRIGFYQRYCNILGVNPGGNLDC 305          
The following BLAST results are available for this feature:
BLAST of CX295084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIB_ARATH1.137e-3442.86Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI3_ORYSJ2.534e-3444.12Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_SOLTU2.534e-3441.38Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHIT_SOLTU3.309e-3442.86Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI2_TOBAC3.309e-3442.36Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHIC_SOLLC4.322e-3441.38Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI1_TOBAC5.645e-3442.36Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI3_SOLTU7.373e-3441.38Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHIC_SECCE1.258e-3341.87Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI2_BRANA3.659e-3340.39Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC05068D08SK DroRLeaf1 Citrus clementina cDNA clone C05068D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295084 ID=CX295084; Name=CX295084; organism=Citrus clementina; type=EST; length=622bp
TTTATTACTGCTCTCAATTCGTATCCTGCATTTGGCAGAACTGATACTAA
TCGTGAAGTGGCAGCATTTTTTGCCCATGTCACTCATGAAACAACAGATT
TTTGCTACATAGAAGAGAAGAATAAAGCAGATCCTCATTGTACATCTCCA
CAATACCCATGTGCCAATGGTAAATTCTACTACGGCCGGGGACCGATTCA
GCTCACCGGAAATGGAAACTACATAGACGCCGGAAGGGCCATCGGTTTCG
ACGGTCTGAACTCTCCGGAAACGGTAGCCAGGGACCGTGTCATATCTTTC
AAGACCGCTTTGTGGTTTTGGATGACATACGTGCACTCAGCACTAAACCA
AGGTTTTGGTGAAACAATTCGGAAAATTAATGGTCCTGCTGAATGCGGTG
GCCGAAACCGTGACCAAGTTCTGGATCGTGTTAGGCGTTACACTGATTAT
TGCAAAAGATTTGGTGTTGATCCTGGACCACGTCTTGAATGCTGAATAGA
TATTTTGTACAAAAAATATTACAGTATATGTATTATATTGTATCACAATA
AGCCAGAGTTATTTCAAACAACTTTCTCTGTTTGGTAACTCTGACGGAAT
AATTTTCTTGTACCTGATCATG
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