CX295084

Overview
NameCX295084
Unique NameCX295084
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length622
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.779e-33
Identity = 82/202 (40.59%), Postives = 104/202 (51.49%), Query Frame = 1
Query:    1 FITALNSYPAFGRT-DT---NREVAAFFAHVTHETTD-------------FCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSALNQ---------------GFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            FI A  +YP+FG T DT    RE+AAF    +HETT              +C++ E+N +     +PQ+PCA G+ YYGRGPIQ++ N NY   GRAIG D LN P+ VA D VISFK+ALWFWMT        H  +                 G+G     ING  ECG     +V DR+  +  YC   GV  G  L+C
Sbjct:  108 FIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPSTYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDC 309          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.241e-33
Identity = 82/202 (40.59%), Postives = 104/202 (51.49%), Query Frame = 1
Query:    1 FITALNSYPAFGRT-DT---NREVAAFFAHVTHETTD-------------FCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSALNQ---------------GFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            FI A  +YP+FG T DT    RE+AAF    +HETT              +C++ E+N +     +PQ+PCA G+ YYGRGPIQ++ N NY   GRAIG D LN P+ VA D VISFK+ALWFWMT        H  +                 G+G     ING  ECG     +V DR+  +  YC   GV  G  L+C
Sbjct:  107 FIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPSAYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDC 308          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.065e-32
Identity = 81/203 (39.90%), Postives = 106/203 (52.22%), Query Frame = 1
Query:    1 FITALNSYPAFGRTDTN----REVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSALN---------------QGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            F+ A  ++PAFG T       REVAAF    +HETT              +C+ +E+N    +C  SP++PCA G+ YYGRGPIQL+ N NY  AGRAIG D L++P+ VA D  +SFKTALWFWMT        H  +                 G+G     +NG  ECG    D+V +R+  Y  YC  FG+  G  L+C
Sbjct:  121 FLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPSPEWPCAPGRKYYGRGPIQLSFNFNYGPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPSPADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDC 323          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.390e-32
Identity = 82/202 (40.59%), Postives = 110/202 (54.46%), Query Frame = 1
Query:    1 FITALNSYPAFGRT-DTN---REVAAFFAHVTHETTD-------------FCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT---------------YVHSALNQ------GFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            FI A  S+  FG T D N   +E+AAF A  +HETT              +C++ E+N  + +C+   +PCA GK YYGRGPIQLT N NY  AG+AI  D +N+P+ ++ +  +SFKTA+WFWMT               +  SA +       G+G     ING  ECG    ++V DRV  Y  YC+ FGVDPG  L+C
Sbjct:  112 FIAAARSFNGFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQNTQEVYCSPKDWPCAPGKKYYGRGPIQLTHNYNYGLAGQAIKEDLINNPDLLSTNPTVSFKTAIWFWMTPQANKPSSHDVITGRWTPSAADSSAGRVPGYGVITNIINGGIECGHGQDNRVDDRVGFYKRYCQIFGVDPGGNLDC 313          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.390e-32
Identity = 84/203 (41.38%), Postives = 110/203 (54.19%), Query Frame = 1
Query:    1 FITALNSYPAFGRT-DTNR---EVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT---------------YVHSALNQ------GFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            FITA  S+  FG T DT R   EVAAFFA  +HETT              +CY+ E+     +C  S Q+PCA G+ YYGRGPIQ++ N NY   GRAIG + LN+P+ VA + V+SFK+A+WFWMT               +  SA ++      G+G     ING  ECG  +  +V DR+  Y  YC   GV PG  ++C
Sbjct:  117 FITAARSFRGFGTTGDTTRRKREVAAFFAQTSHETTGGWDTAPDGRYAWGYCYLREQGNPPSYCVQSSQWPCAPGQKYYGRGPIQISYNYNYGPCGRAIGQNLLNNPDLVATNAVVSFKSAIWFWMTAQSPKPSCHDVITGRWTPSAADRAANRLPGYGVITNIINGGLECGHGSDARVQDRIGFYRRYCSILGVSPGDNIDC 319          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.816e-32
Identity = 84/203 (41.38%), Postives = 108/203 (53.20%), Query Frame = 1
Query:    1 FITALNSYPAFGRT-DTN---REVAAFFAHVTHETTD-------------FCYIEEKNKADPHC-TSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSALN---------------QGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            FITA  ++ AFG T DTN   +E+AAF A  +HETT              +CY  E+     +C +S Q+PCA GK Y+GRGPIQ++ N NY  AG AIG + LN+P+ VA D V+SFKTALWFWMT        H  +                 GFG     ING  EC   +   + +R+  Y  YC+  GVDPG  L+C
Sbjct:   37 FITATKTFAAFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPGDYCASSQQWPCAPGKKYFGRGPIQISYNYNYGAAGSAIGVNLLNNPDLVANDAVVSFKTALWFWMTAQQPKPSAHDVITGRWSPSVADSAPGRVPGFGVITNIINGGMECNSGSNALMDNRIGFYRRYCQILGVDPGNNLDC 239          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.284e-32
Identity = 79/203 (38.92%), Postives = 105/203 (51.72%), Query Frame = 1
Query:    1 FITALNSYPAFGRTDTN----REVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSALN---------------QGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            F+ A  S+P+FG T +     RE+AAF    +HETT              +C+++E+N +  +C  SP+YPCA GK YYGRGP+QL+ N NY   G A+  + L +P+ VA DRV+SFKTALWFWMT        H  L                 G+G     +NG  ECG     QV DR+  +  YC   GV  G  L+C
Sbjct:   34 FLAAAKSFPSFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPRYPCAPGKSYYGRGPLQLSWNYNYGPCGEALRVNLLGNPDLVATDRVLSFKTALWFWMTPQAPKPSCHDVLTGRWQPSAADTAAGRLPGYGVLTNLLNGGLECGKGPNPQVADRLGFFRRYCGLLGVGTGNNLDC 236          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 6.900e-32
Identity = 81/202 (40.10%), Postives = 105/202 (51.98%), Query Frame = 1
Query:    1 FITALNSYPAF---GRTDTN-REVAAFFAHVTHETTD-------------FCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSALN---------------QGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            F++A  ++P F   G T T  RE+AAF    +HETT              +C++ E+N +     S ++PCA+GK YYGRGPIQ++ N NY   GRAIG D LN+P+ VA D VISFKTALWFWMT        H  +                 G+G     ING  ECG     +V DR+  Y  YC  FG+  G  L+C
Sbjct:  100 FLSAAKAFPNFANKGDTATKKREIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLREQNPSTYCQASSEFPCASGKQYYGRGPIQISWNYNYGQCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVITGGWTPSSADRAAGRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFYKRYCDIFGIGYGDNLDC 301          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.012e-32
Identity = 84/203 (41.38%), Postives = 104/203 (51.23%), Query Frame = 1
Query:    1 FITALNSYPAFGRT-DTN---REVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSALN---------------QGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            FI A  ++P FG T DT    RE+AAF A  +HETT              +CY+ E+     +C  S Q+PCA G+ YYGRGPIQ++ N NY  AG+AIG D +N+P+ VA D VISFKTA WFWMT        H+ +                 GFG     ING  ECG     QV DR+  Y  YC    V  G  L+C
Sbjct:   97 FIAAAKAFPGFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGAYCVPSAQWPCAAGRKYYGRGPIQISYNYNYGQAGKAIGVDLVNNPDLVATDAVISFKTAFWFWMTPQSPKPSCHNVITGGWTPSGADRSAGRLPGFGVITNIINGGVECGKGVVPQVQDRIGFYKRYCDILRVSYGNNLDC 299          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.012e-32
Identity = 82/203 (40.39%), Postives = 104/203 (51.23%), Query Frame = 1
Query:    1 FITALNSYPAFGRTDT----NREVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSALN---------------QGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            F+ A  ++P FG T +     REVAAF A  +HETT              +C+ +E+  +  +CT S Q+PCA GK YYGRGPIQL+ N NY  AGRAIG D L +P+ VA D  + FKTA+WFWMT        H+ +                 GFG     ING  ECG     +V DR+  Y  YC   GV  G  L+C
Sbjct:   57 FVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMTAQPPKPSSHAVIAGQWSPSGADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDC 259          
The following BLAST results are available for this feature:
BLAST of CX295084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIT_PHAVU4.779e-3340.59Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI5_PHAVU6.241e-3340.59Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI2_ORYSJ1.065e-3239.90Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIX_PEA1.390e-3240.59Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI3_TOBAC1.390e-3241.38Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHID_SOLLC1.816e-3241.38Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHIT_CARPA5.284e-3238.92Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI2_PEA6.900e-3240.10Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHIB_VITVI9.012e-3241.38Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI2_HORVU9.012e-3240.3926 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC05068D08SK DroRLeaf1 Citrus clementina cDNA clone C05068D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295084 ID=CX295084; Name=CX295084; organism=Citrus clementina; type=EST; length=622bp
TTTATTACTGCTCTCAATTCGTATCCTGCATTTGGCAGAACTGATACTAA
TCGTGAAGTGGCAGCATTTTTTGCCCATGTCACTCATGAAACAACAGATT
TTTGCTACATAGAAGAGAAGAATAAAGCAGATCCTCATTGTACATCTCCA
CAATACCCATGTGCCAATGGTAAATTCTACTACGGCCGGGGACCGATTCA
GCTCACCGGAAATGGAAACTACATAGACGCCGGAAGGGCCATCGGTTTCG
ACGGTCTGAACTCTCCGGAAACGGTAGCCAGGGACCGTGTCATATCTTTC
AAGACCGCTTTGTGGTTTTGGATGACATACGTGCACTCAGCACTAAACCA
AGGTTTTGGTGAAACAATTCGGAAAATTAATGGTCCTGCTGAATGCGGTG
GCCGAAACCGTGACCAAGTTCTGGATCGTGTTAGGCGTTACACTGATTAT
TGCAAAAGATTTGGTGTTGATCCTGGACCACGTCTTGAATGCTGAATAGA
TATTTTGTACAAAAAATATTACAGTATATGTATTATATTGTATCACAATA
AGCCAGAGTTATTTCAAACAACTTTCTCTGTTTGGTAACTCTGACGGAAT
AATTTTCTTGTACCTGATCATG
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