CX295084

Overview
NameCX295084
Unique NameCX295084
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length622
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.177e-31
Identity = 81/203 (39.90%), Postives = 103/203 (50.74%), Query Frame = 1
Query:    1 FITALNSYPAFGRTDTN----REVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSALN---------------QGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            F+ A  ++P FG T +     REVAAF A  +HETT              +C+ +E+     +CT S Q+PCA GK YYGRGPIQL+ N NY  AGRAIG D L +P+ VA D  +SFKTA+WFWMT        H+ +                 GFG     +NG  ECG     +V DR+  Y  YC    V  G  L+C
Sbjct:  112 FVAAAGAFPGFGTTGSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILRVGYGNNLDC 314          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.177e-31
Identity = 86/203 (42.36%), Postives = 101/203 (49.75%), Query Frame = 1
Query:    1 FITALNSYPAFGRTDTN----REVAAFFAHVTHETTD--------------FCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT---------------YVHSALNQ------GFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            FI A  S+PAF  T  +    REVAAF A  +HETT               +CY  E N AD     P YPCA GK Y+GRGP+QLT N NY   GRAIG D LN+P+ +A D  ISFK+A WFWMT               +  S  +Q      GFG     ING  ECG     +V DR+  Y  YC   GV  G  L+C
Sbjct:  104 FIAAAKSFPAFATTGDDATRKREVAAFLAQTSHETTGGAGWAAPDGPYTWGYCYNRELNPADYCQWDPNYPCAPGKQYFGRGPMQLTWNYNYGQCGRAIGVDLLNNPDLLATDPTISFKSAFWFWMTPQSPKPSCHDVIIGAWSPSGSDQAAGRVPGFGLITNIINGGLECGQGWNAKVEDRIGFYKRYCDTLGVGYGNNLDC 306          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 136.346 bits (342), Expect = 1.177e-31
Identity = 83/203 (40.89%), Postives = 105/203 (51.72%), Query Frame = 1
Query:    1 FITALNSYPAFGRT---DTN-REVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSALN---------------QGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            F+ A +++  FG T   DT  REVAAF A  +HETT              +C+ +E+     +CT S Q+PCA GK YYGRGPIQL+ N NY  AGRAIG D L +P+ VA D  +SFKTA+WFWMT        H+ +                 GFG     +NG  ECG     +V DR+  Y  YC   GV  G  L+C
Sbjct:  109 FVAAASAFRGFGTTGGTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDC 311          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 7.629e-31
Identity = 82/204 (40.20%), Postives = 100/204 (49.02%), Query Frame = 1
Query:    1 FITALNSYPAFGRTDTN----REVAAFFAHVTHETTD--------------FCYIEEKNKADPHCTS-PQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSAL---------------NQGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            FI A  S+PAF  T       RE+AAF A  +HETT               +CY  E N    +C S P YPCA GK Y+GRGP+QL+ N NY   GRAIG D LN+P+ ++ D  ISFK+A WFWMT        H+ +                 G+G     ING  ECG     QV DR+  Y  YC   GV  G  L+C
Sbjct:   84 FIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWAAPDGPYAWGYCYNRELNPPSSYCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRATGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDC 287          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.964e-31
Identity = 82/204 (40.20%), Postives = 100/204 (49.02%), Query Frame = 1
Query:    1 FITALNSYPAFGRTDTN----REVAAFFAHVTHETTD--------------FCYIEEKNKADPHCTS-PQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSAL---------------NQGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            FI A  S+PAF  T       RE+AAF A  +HETT               +CY  E N    +C S P YPCA GK Y+GRGP+QL+ N NY   GRAIG D LN+P+ ++ D  ISFK+A WFWMT        H+ +                 G+G     ING  ECG     QV DR+  Y  YC   GV  G  L+C
Sbjct:  106 FIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWAAPDGPYAWGYCYNRELNPPSSYCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRVPGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDC 309          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.301e-30
Identity = 80/204 (39.22%), Postives = 101/204 (49.51%), Query Frame = 1
Query:    1 FITALNSYPAFGRTDT----NREVAAFFAHVTHETTD-------------FCYIEEKNKADPHC--TSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT---------------------YVHSALNQGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            F+ A   +P F  T       REVAAF A ++HETT               CY EE N    +C  T  Q+PC  GK Y+GRGPIQ++ N NY  AG+A+GFDGL +PE VA    I+F+TALWFWMT                      V +    GFG     +NG  EC      +V +R+  Y  YC+  GVD GP L+C
Sbjct:   81 FVRAATRFPRFAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDKQWPCYPGKSYHGRGPIQISWNFNYGPAGQALGFDGLRNPEIVANCSDIAFQTALWFWMTPRDTKPSCHQVMVGEYRPGPADVAANRTAGFGLVTNIVNGGLECNRAGDARVNNRIGFYRRYCQVLGVDVGPNLDC 284          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.459e-30
Identity = 80/205 (39.02%), Postives = 103/205 (50.24%), Query Frame = 1
Query:    1 FITALNSYPAFGRTDT----NREVAAFFAHVTHETTD-------------FCYIEEKNK---ADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSALN---------------QGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            F+ A N++P+F  T       REVAAF A  +HETT              +C+ EE N    +D    S Q+PCA GK YYGRGPIQ++ N NY  AG+AIG + L++P+ VA D  +SFKTA WFWMT        H+ +                 G+G     ING  ECG     +V DR+  Y  YC   GV  G  L+C
Sbjct:  111 FVAAANAFPSFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNGNVGSDYCVQSSQWPCAAGKKYYGRGPIQISYNYNYGPAGQAIGSNLLSNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVMTGQWTPNGNDQAAGRVPGYGVVTNIINGGVECGHGADSRVADRIGFYKRYCDMLGVSYGANLDC 315          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.102e-29
Identity = 80/190 (42.11%), Postives = 103/190 (54.21%), Query Frame = 1
Query:    1 FITALNSYPAFGRT-DTN---REVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT---------------YVHSALNQ------GFGETIRKINGPAECGGRNRDQVLDRVRRYTDYC 453
            FI A  S+  FG T DT    RE+AAFFA  +HETT              +C++ E+     +CT S Q+PCA G+ Y+GRGPIQ++ N NY   GRAIG D LN+P+ VA D VISFK+A+WFWMT               +  SA ++      GFG     ING  ECG  +  +V DR+  Y  YC
Sbjct:  111 FINAARSFGGFGTTGDTTARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVIIGRWQPSAADRAANRLPGFGVITNIINGGLECGRGSDSRVQDRIGFYRRYC 300          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 1.879e-29
Identity = 85/206 (41.26%), Postives = 104/206 (50.49%), Query Frame = 1
Query:    1 FITALNSYPAF----GRTDTN-REVAAFFAHVTHETTD-------------FCYIEEKNKA--DPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT---------------YVHSALNQ------GFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            F+ A +++P F    G  DTN REVAAF A  +HETT              +C+ EE   A    +C  S Q+PCA GK YYGRGPIQL+ N NY  AG+AIG D L  P+ VA D  +SF TA WFWMT               +  SA +Q      G+G     ING  ECG    D+V DR+  Y  YC   GV     L+C
Sbjct:  113 FVAAASAFPGFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQWPCAAGKKYYGRGPIQLSYNFNYGPAGQAIGADLLGDPDLVASDATVSFDTAFWFWMTPQSPKPSCHAVATGQWTPSADDQAAGRVPGYGVITNIINGGLECGHGEDDRVADRIGFYKRYCDILGVSYDANLDC 318          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.078e-28
Identity = 79/200 (39.50%), Postives = 99/200 (49.50%), Query Frame = 1
Query:    1 FITALNSYPAFGRT--DTNR--EVAAFFAHVTHETTD-----------FCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT---------------YVHSALNQ------GFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            FI A NS+P FG T  DT R  E+AAFF   +HETT            +C++ + +++D               YYGRGPIQLT   NY  AG AIG + +N+P+ VA D  ISFKTA+WFWMT               +  SA +Q      G+G     ING  ECG    D V DR+  Y  YC    V PG  L+C
Sbjct:   59 FIAAANSFPGFGTTGDDTARRKEIAAFFGQTSHETTGGSLSAEPFTGGYCFVRQNDQSDR--------------YYGRGPIQLTNRNNYEKAGTAIGQELVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGRWTPSAADQAANRVPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNVAPGENLDC 244          
The following BLAST results are available for this feature:
BLAST of CX295084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIA_SECCE1.177e-3139.90Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI1_THECC1.177e-3142.36Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHI1_HORVU1.177e-3140.8926 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHI2_GOSHI7.629e-3140.20Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI1_GOSHI9.964e-3140.20Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI10_ORYSJ1.301e-3039.22Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI1_ORYSJ6.459e-3039.02Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_SOLTU1.102e-2942.11Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHI12_ORYSJ1.879e-2941.26Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIQ_TOBAC2.078e-2839.50Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionC05068D08SK DroRLeaf1 Citrus clementina cDNA clone C05068D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295084 ID=CX295084; Name=CX295084; organism=Citrus clementina; type=EST; length=622bp
TTTATTACTGCTCTCAATTCGTATCCTGCATTTGGCAGAACTGATACTAA
TCGTGAAGTGGCAGCATTTTTTGCCCATGTCACTCATGAAACAACAGATT
TTTGCTACATAGAAGAGAAGAATAAAGCAGATCCTCATTGTACATCTCCA
CAATACCCATGTGCCAATGGTAAATTCTACTACGGCCGGGGACCGATTCA
GCTCACCGGAAATGGAAACTACATAGACGCCGGAAGGGCCATCGGTTTCG
ACGGTCTGAACTCTCCGGAAACGGTAGCCAGGGACCGTGTCATATCTTTC
AAGACCGCTTTGTGGTTTTGGATGACATACGTGCACTCAGCACTAAACCA
AGGTTTTGGTGAAACAATTCGGAAAATTAATGGTCCTGCTGAATGCGGTG
GCCGAAACCGTGACCAAGTTCTGGATCGTGTTAGGCGTTACACTGATTAT
TGCAAAAGATTTGGTGTTGATCCTGGACCACGTCTTGAATGCTGAATAGA
TATTTTGTACAAAAAATATTACAGTATATGTATTATATTGTATCACAATA
AGCCAGAGTTATTTCAAACAACTTTCTCTGTTTGGTAACTCTGACGGAAT
AATTTTCTTGTACCTGATCATG
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