CX295084

Overview
NameCX295084
Unique NameCX295084
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length622
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.078e-28
Identity = 80/201 (39.80%), Postives = 99/201 (49.25%), Query Frame = 1
Query:    1 FITALNSYPAFGRT--DTNR--EVAAFFAHVTHETTD------------FCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT---------------YVHSALN------QGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            FI A NS+P FG T  DT R  E+AAFF   +HETT             +C++ E N+              G  +YGRGPIQLTG  NY  AG+AIG D +N+P+ VA D  +SFKTA+WFWMT               +  SA +       G+G     ING  ECG     QV DR+  Y  YC    V PG  L+C
Sbjct:   51 FIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSADGPFAGGYCFVREGNQM-------------GSGFYGRGPIQLTGQSNYDLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAPGDNLDC 238          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.078e-28
Identity = 79/202 (39.11%), Postives = 100/202 (49.50%), Query Frame = 1
Query:    4 ITALNSYPAFGRTDTN----REVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSALN---------------QGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            +TA  ++P F  T  +    REVAAF    +HETT              +C+ EE      +C  S ++PCA  K Y+GRGPIQL+ N NY  AG AIG D LN+PE VA D V+SFKTALWFWMT        H  +                 G+G     ING  ECG    D+V +R+  Y  YC   G+  G  L+C
Sbjct:  119 VTAAAAFPDFAATGDDEARKREVAAFLGQTSHETTGGWATAPDGPYSWGYCFKEEIGATASYCVPSAEWPCAPDKKYFGRGPIQLSYNYNYGPAGEAIGEDLLNNPELVASDPVVSFKTALWFWMTPQSPKPSCHDVITGQWTPSSGDIAAGRVPGYGVITNIINGGLECGFGPDDRVANRIGFYQRYCDVLGIGYGSNLDC 320          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.078e-28
Identity = 80/202 (39.60%), Postives = 100/202 (49.50%), Query Frame = 1
Query:    1 FITALNSYPAFGRTDTN-----REVAAFFAHVTHETTD------------FCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT---------------YVHSALN------QGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            FI A NS+PAFG +  +     RE+AAFF   +HETT             +C+ EE NKA    TSP Y        YGRGPIQLTG  NY  AG A+G D + +P+ V+ D V+SFKTA+WFWMT               +  SA +       G+G     ING  ECG    D  +DR+  Y  YC   G   G  L+C
Sbjct:   64 FIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTGGTRGSSDQFQWGYCFKEEINKA----TSPPY--------YGRGPIQLTGQSNYQAAGNALGLDLVGNPDLVSTDAVVSFKTAIWFWMTAQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIECGVGQNDANVDRIGYYKRYCDMLGAGYGSNLDC 253          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.317e-26
Identity = 77/197 (39.09%), Postives = 97/197 (49.24%), Query Frame = 1
Query:    1 FITALNSYPAFGRT---DTN-REVAAFFAHVTHETTD------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMTY--------------------VHSALNQ--GFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            F+ A  ++PAF  T   DT  REVAAF A  +H T+       +CY E K      C  + ++PCA GK Y+ RGP+Q+  N NY  AG AIG D L +PE VA D  ++FKTALW WMT                       SA  +  G+G T   + G  +C G N     DRV  Y  YC   GV  GP L+C
Sbjct:  129 FVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATSGGPYSWGYCYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVGYGPNLDC 323          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.317e-26
Identity = 77/197 (39.09%), Postives = 97/197 (49.24%), Query Frame = 1
Query:    1 FITALNSYPAFGRT---DTN-REVAAFFAHVTHETTD------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMTY--------------------VHSALNQ--GFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            F+ A  ++PAF  T   DT  REVAAF A  +H T+       +CY E K      C  + ++PCA GK Y+ RGP+Q+  N NY  AG AIG D L +PE VA D  ++FKTALW WMT                       SA  +  G+G T   + G  +C G N     DRV  Y  YC   GV  GP L+C
Sbjct:  129 FVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATSGGPYSWGYCYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVGYGPNLDC 323          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.658e-26
Identity = 77/200 (38.50%), Postives = 96/200 (48.00%), Query Frame = 1
Query:    1 FITALNSYPAFGRT--DTNR--EVAAFFAHVTHETTD-----------FCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT---------------YVHSALNQ------GFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            FI A NS+P FG +  DT R  E+AAFF   +HETT            +C++ + +++D               YYGRGPIQLT   NY  AG AI  D +N+P+ VA D  ISFKTA+WFWMT               +  SA +Q      G G     ING  ECG      V DR+  Y  YC    V PG  L+C
Sbjct:   59 FIAAANSFPGFGTSGDDTARRKEIAAFFGQTSHETTGGSLSAEPFTGGYCFVRQNDQSDR--------------YYGRGPIQLTNQNNYEKAGNAIRQDLVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNVAPGDNLDC 244          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.150e-25
Identity = 77/201 (38.31%), Postives = 96/201 (47.76%), Query Frame = 1
Query:    1 FITALNSYPAFGRT--DTNR--EVAAFFAHVTHETTD------------FCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT---------------YVHSALN------QGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            FI A NS+P FG T  DT R  E+AAFF   +HETT             +C++ E N+              G  YYGRGPIQLTG  NY  AG+AI  D +N+P+ VA D  +SFKTA+WFWMT               +  SA +       G+G     ING  ECG     +V DR+  Y        V PG  L+C
Sbjct:   58 FIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGTLSPDGPYAGGYCFLREGNQM-------------GNGYYGRGPIQLTGQSNYDLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMTPQGNKPSCHDVITGRWTPSAADTSANRVPGYGVITNIINGGIECGKGQNARVEDRIGYYRRNVSIMNVAPGDNLDC 245          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.541e-23
Identity = 72/203 (35.47%), Postives = 92/203 (45.32%), Query Frame = 1
Query:    1 FITALNSYPAFGRTDTN----REVAAFFAHVTHETTD-------------FCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSALNQ---------------GFGETIRKINGPAECG-GRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            FI A   +P FG T  +    RE+AAFF   +HETT              +C + E   +DP              YYGRGPIQLT   NY  AG A+G D +N+P+ V+ D V++F+TA+WFWMT        H  +                 G+G     ING  ECG G + D   DRV  Y  YC  F V  G  + C
Sbjct:   58 FIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEITPSDPP-------------YYGRGPIQLTHKYNYQLAGDALGLDLVNNPDLVSSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDDRSSGRLPGYGMATNIINGGEECGKGYSTDNAKDRVGYYKRYCDMFRVGYGDNIAC 247          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 7.647e-23
Identity = 75/204 (36.76%), Postives = 92/204 (45.10%), Query Frame = 1
Query:    1 FITALNSYPAFGRTDTN----REVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWM---------------TYVHSALN------QGFGETIRKINGPAECG-GRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            FI+A   +P FG T  +    RE+AAF    +HETT              +CY++E N   P+C  S  Y C  GK Y GRGPIQL+ N NY   G  +    L  PE V  D VISFKTA+WFWM                +  SA +       G+G     ING  ECG G       DR+  Y  YC   G   G  L+C
Sbjct:  121 FISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEIN-CQPYCDPSSNYQCVAGKQYCGRGPIQLSWNYNYGLCGDDLKLPLLQEPELVETDPVISFKTAIWFWMKPQSPKPSCHAVITGNWTPSAADLEAGRVPGYGVITNIINGGIECGQGGPNAANEDRIGFYKKYCDSLGTTYGSNLDC 323          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.906e-22
Identity = 72/200 (36.00%), Postives = 94/200 (47.00%), Query Frame = 1
Query:    1 FITALNSYPAFGRT--DTNR--EVAAFFAHVTHETTD---------FCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGF--DGLNSPETVARDRVISFKTALWFWMTY-------------------VHSALNQ--GFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            FI A NS+P FG T  DT R  E+AAFF   +HET           +C++ + +++D               YYGRGPIQLT   NY  AG+ IG   D +N+P+ VA D +ISF+TA+WFWMT                      +A N+  G+G     ING  EC       V  R+  Y  YC    V  G  L+C
Sbjct:   59 FIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETKGGSAGTFTGGYCFVRQIDQSDR--------------YYGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGMLNVPTGENLDC 244          
The following BLAST results are available for this feature:
BLAST of CX295084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIB_SOLLC2.078e-2839.80Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI9_ORYSJ2.078e-2839.11Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI8_ORYSJ2.078e-2839.60Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSJ3.317e-2639.09Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI3.317e-2639.09Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHIP_TOBAC5.658e-2638.50Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHIT_PETHY2.150e-2538.31Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHI11_ORYSJ1.541e-2335.47Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI6_POPTR7.647e-2336.76Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHIA_SOLCI2.906e-2236.00Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05068D08SK DroRLeaf1 Citrus clementina cDNA clone C05068D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295084 ID=CX295084; Name=CX295084; organism=Citrus clementina; type=EST; length=622bp
TTTATTACTGCTCTCAATTCGTATCCTGCATTTGGCAGAACTGATACTAA
TCGTGAAGTGGCAGCATTTTTTGCCCATGTCACTCATGAAACAACAGATT
TTTGCTACATAGAAGAGAAGAATAAAGCAGATCCTCATTGTACATCTCCA
CAATACCCATGTGCCAATGGTAAATTCTACTACGGCCGGGGACCGATTCA
GCTCACCGGAAATGGAAACTACATAGACGCCGGAAGGGCCATCGGTTTCG
ACGGTCTGAACTCTCCGGAAACGGTAGCCAGGGACCGTGTCATATCTTTC
AAGACCGCTTTGTGGTTTTGGATGACATACGTGCACTCAGCACTAAACCA
AGGTTTTGGTGAAACAATTCGGAAAATTAATGGTCCTGCTGAATGCGGTG
GCCGAAACCGTGACCAAGTTCTGGATCGTGTTAGGCGTTACACTGATTAT
TGCAAAAGATTTGGTGTTGATCCTGGACCACGTCTTGAATGCTGAATAGA
TATTTTGTACAAAAAATATTACAGTATATGTATTATATTGTATCACAATA
AGCCAGAGTTATTTCAAACAACTTTCTCTGTTTGGTAACTCTGACGGAAT
AATTTTCTTGTACCTGATCATG
back to top