CX295084

Overview
NameCX295084
Unique NameCX295084
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length622
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.455e-22
Identity = 69/200 (34.50%), Postives = 92/200 (46.00%), Query Frame = 1
Query:    1 FITALNSYPAFGR----TDTNREVAAFFAHVTHETTD---------FCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGF--DGLNSPETVARDRVISFKTALWFWMTY-------------------VHSALNQ--GFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            FI A NS+P FG     T   +E+AAFF   +HET           +C++++  ++D               YYGRGPIQLT   NY  AG+ IG   + +N+P+ VA D +ISFKTA+WFWMT                      +A N+  G+G     ING  ECG         R+  Y  YC    V  G  L+C
Sbjct:   59 FIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGGSAGTFTGGYCFVKQIEQSDR--------------YYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNVPTGENLDC 244          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.455e-22
Identity = 69/206 (33.50%), Postives = 89/206 (43.20%), Query Frame = 1
Query:    1 FITALNSYPAFGRT---DTN-REVAAFFAHVTHETTD-------------FCYIEEKNKADPHC---TSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWM----------------------TYVHSALNQGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            +  A   YP FG T   DT  RE+AAFFA  + ET+              +C + E N    +C   T   YPC     YYGRGP+QL  N NY + G  +G + L+ PE VA D V+SF+ ALWFWM                        + +    GFG     I    EC    + +  +R+  Y  YC    VDPG  L C
Sbjct:   95 YFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNPNSDYCDPKTKSSYPCVAD--YYGRGPLQLRWNYNYGECGNYLGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYCDMLQVDPGDNLYC 298          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 5.480e-21
Identity = 58/130 (44.62%), Postives = 73/130 (56.15%), Query Frame = 1
Query:    1 FITALNSYPAFGR----TDTNREVAAFFAHVTHETTDFCYIEEKNKADPH-----------------CTSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT 327
            F+ A  S+PAFG         REVAAF AH++  T+     E  +  +PH                 CTS  +PCA GK Y  RGPIQLT N NY  AG+AIG D + +P+ V +D +ISFKTALWFWM+
Sbjct:  160 FLVAAESFPAFGTIGDVATRKREVAAFLAHISQATSG----ERSDVENPHAWGLCHINTTTVTENDFCTSSDWPCAAGKKYSPRGPIQLTHNFNYGLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMS 285          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.221e-20
Identity = 66/174 (37.93%), Postives = 80/174 (45.98%), Query Frame = 1
Query:    1 FITALNSYPAF---GRTDTN-REVAAFFAHVTHETTDFCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSALN---------------QGFGETIRKINGPAECGGRNRDQVLDRVRRYTD 447
            FI A  S+PAF   G TD   REVAAF A  +HETT            P      Y   +   Y+GRGPIQ++ N NY  AG+AIG D L +P+ V  D  + FKTALWFWMT        H  +                 G+G     I+G  ECG      V DR+  Y D
Sbjct:   25 FIAAAKSFPAFATTGSTDVRKREVAAFLAQTSHETTG---------GWPTAPDGPYELGSTSDYFGRGPIQISYNYNYGAAGKAIGVDLLRNPDLVTSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECGKGQESHVADRIGYYKD 189          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: IAMY_COILA (Alpha-amylase inhibitor/endochitinase (Fragments) OS=Coix lachryma-jobi PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.595e-20
Identity = 61/139 (43.88%), Postives = 74/139 (53.24%), Query Frame = 1
Query:   70 FAHVTHETTDFCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHSALNQGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRL 486
            FAHVTHET +  Y       DP  T  Q PCA GK YYGRGPIQ++ N NY  AGRAIG DGL +P+ VA+D +  +KTAL F                   +NG     G +     + V  Y  YC++ GVDPGP L
Sbjct:   24 FAHVTHETGNNAY------CDPSKT--QKPCAAGKKYYGRGPIQISXNYNYGPAGRAIGMDGLGNPDRVAQDALDDYKTALXF------------------LVNGEEAVPGLS---AANAVSYYRQYCQQLGVDPGPNL 133          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 7.932e-12
Identity = 58/190 (30.53%), Postives = 76/190 (40.00%), Query Frame = 1
Query:    1 FITALNSYPAFGRTDTN----REVAAFFAHVTHETTDFCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSALNQ---------------GFGETIRKINGPAECG-GRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            FI+A   +P FG T  +    RE+AAF    +HET  +                 +P A G   Y  G   +  N NY   G  +    L  PE V  D  I+FKTALWFWMT        H+ + +               G+G     ING  ECG G   +   +R+  Y  YC   G   G  L+C
Sbjct:  117 FISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETNGW-----------------WPAAQGD-QYDWGYCHM--NYNYGLCGDDLNLPLLQEPELVETDPFIAFKTALWFWMTPQSPKPSCHAVITESWTPSAADSEAGRVPGYGVITNIINGGIECGQGGPNNANENRIGFYKTYCDSLGTTYGSNLDC 286          
The following BLAST results are available for this feature:
BLAST of CX295084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIA_SOLLC8.455e-2234.50Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI8_POPTR8.455e-2233.50Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
AGI_URTDI5.480e-2144.62Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHIT_AVESA1.221e-2037.93Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
IAMY_COILA1.595e-2043.88Alpha-amylase inhibitor/endochitinase (Fragments) ... [more]
CHIB_POPTR7.932e-1230.53Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]

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Properties
Property NameValue
Genbank descriptionC05068D08SK DroRLeaf1 Citrus clementina cDNA clone C05068D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295084 ID=CX295084; Name=CX295084; organism=Citrus clementina; type=EST; length=622bp
TTTATTACTGCTCTCAATTCGTATCCTGCATTTGGCAGAACTGATACTAA
TCGTGAAGTGGCAGCATTTTTTGCCCATGTCACTCATGAAACAACAGATT
TTTGCTACATAGAAGAGAAGAATAAAGCAGATCCTCATTGTACATCTCCA
CAATACCCATGTGCCAATGGTAAATTCTACTACGGCCGGGGACCGATTCA
GCTCACCGGAAATGGAAACTACATAGACGCCGGAAGGGCCATCGGTTTCG
ACGGTCTGAACTCTCCGGAAACGGTAGCCAGGGACCGTGTCATATCTTTC
AAGACCGCTTTGTGGTTTTGGATGACATACGTGCACTCAGCACTAAACCA
AGGTTTTGGTGAAACAATTCGGAAAATTAATGGTCCTGCTGAATGCGGTG
GCCGAAACCGTGACCAAGTTCTGGATCGTGTTAGGCGTTACACTGATTAT
TGCAAAAGATTTGGTGTTGATCCTGGACCACGTCTTGAATGCTGAATAGA
TATTTTGTACAAAAAATATTACAGTATATGTATTATATTGTATCACAATA
AGCCAGAGTTATTTCAAACAACTTTCTCTGTTTGGTAACTCTGACGGAAT
AATTTTCTTGTACCTGATCATG
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