CX295085

Overview
NameCX295085
Unique NameCX295085
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295085 vs. ExPASy Swiss-Prot
Match: SKP1B_DICDI (SCF ubiquitin ligase complex protein SKP1b OS=Dictyostelium discoideum GN=fpaB-1 PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.949e-47
Identity = 93/152 (61.18%), Postives = 121/152 (79.61%), Query Frame = 2
Query:   56 ITLKSSDGETFEVEETVALESQTIKHMVED-DCADTVIPLPNVTSTILSKVIEYCKKHVEARS--GDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQW 502
            + L+SSD + FE+E+ +A  S TIK+M+ED   +D  IPLPNVTSTIL KV++YC+ H +  S  GD K D+   DD+  +D DF KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MI+GKTPEEIRK FNIKNDF+P+EEE++R+EN+W
Sbjct:    4 VKLESSDEKVFEIEKEIACMSVTIKNMIEDIGESDAPIPLPNVTSTILEKVLDYCRHHHQHPSPQGDDKKDEKRLDDIPPYDRDFCKVDQPTLFELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155          
BLAST of CX295085 vs. ExPASy Swiss-Prot
Match: ASK9_ARATH (SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK9 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.769e-47
Identity = 96/158 (60.76%), Postives = 118/158 (74.68%), Query Frame = 2
Query:   44 SEKKITLKSSDGETFEVEETVALESQTI-KHMVEDDCADTVIPLPNVTSTILSKVIEYCKKH-VEARSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 511
            S KKI LKSSDG +FEVEE  A + Q I  HM E+DC D  IPLPNVT  IL+ VIEYC KH V+A +        ++DDLK WD +F++ D +T+FDLI AANYLNIKSL DL CQTVA++IKG TPE+IR+ FNI+ND +P+EE  +RREN+WAFE
Sbjct:    2 STKKIILKSSDGHSFEVEEEAARQCQIIIAHMSENDCTDNGIPLPNVTGKILAMVIEYCNKHHVDAAN------PCSDDDLKKWDKEFMEKDTSTIFDLIKAANYLNIKSLFDLACQTVAEIIKGNTPEQIREFFNIENDLTPEEEAAIRRENKWAFE 153          
BLAST of CX295085 vs. ExPASy Swiss-Prot
Match: ASK15_ARATH (SKP1-like protein 15 OS=Arabidopsis thaliana GN=ASK15 PE=2 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.325e-46
Identity = 96/166 (57.83%), Postives = 119/166 (71.69%), Query Frame = 2
Query:   44 SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEARSGD--------KKDDKSTEDDLKTWDADFVK-VDQNTLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEE-VRRENQWAFE 511
            S  KI L SSDGE+F+VEE VA + Q +KH++EDDC    IPL NVT  ILS V+EYCKKHV+    D        KK D   + +L  WDA+F+K +D  T+F LILAANYLN++ LL LTCQTVAD IK KTPEE+R+ FNI+NDF+ +EEEE +R+EN WAFE
Sbjct:    2 SSNKIVLTSSDGESFQVEEVVARKLQIVKHLLEDDCVINEIPLQNVTGNILSIVLEYCKKHVDDVVDDDASEEPKKKKPDDEAKQNLDAWDAEFMKNIDMETIFKLILAANYLNVEGLLGLTCQTVADYIKDKTPEEVRELFNIENDFTHEEEEEAIRKENAWAFE 167          
BLAST of CX295085 vs. ExPASy Swiss-Prot
Match: ASK16_ARATH (SKP1-like protein 16 OS=Arabidopsis thaliana GN=ASK16 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.620e-44
Identity = 89/166 (53.61%), Postives = 117/166 (70.48%), Query Frame = 2
Query:   44 SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEARSGDKKD---------DKSTEDDLKTWDADFVK-VDQNTLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 511
            S  KI L SSD E+FEVEE VA + + I HM++DDCAD  IPL NVT  IL+ VIEYCKKHV     D  D         ++  +++L+TWDA+F+K  D  T+  LILA NYLN++ LL LTCQTVAD +K  +PEE+R+ FNI+ND++P+EE+ +R+EN WAFE
Sbjct:    2 SSNKIVLTSSDDESFEVEEAVARKLKVIAHMIDDDCADKAIPLENVTGNILALVIEYCKKHVLDDVDDSDDSTEATSENVNEEAKNELRTWDAEFMKEFDMETVMKLILAVNYLNVQDLLGLTCQTVADHMKDMSPEEVRELFNIENDYTPEEEDAIRKENAWAFE 167          
BLAST of CX295085 vs. ExPASy Swiss-Prot
Match: SKP1_XENLA (S-phase kinase-associated protein 1 OS=Xenopus laevis GN=skp1 PE=1 SV=3)

HSP 1 Score: 178.333 bits (451), Expect = 3.609e-44
Identity = 91/159 (57.23%), Postives = 117/159 (73.58%), Query Frame = 2
Query:   56 ITLKSSDGETFEVEETVALESQTIKHMVED-----DCADTVIPLPNVTSTILSKVIEYCKKHVEARSGDKKDDKSTE--DDLKTWDADFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 511
            I L+SSDGE FEV+  +A +S TIK M+ED     +  D  +PLPNV + IL KVI++C  H +     + D+   +  DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CX295085 vs. ExPASy Swiss-Prot
Match: SKP1_RAT (S-phase kinase-associated protein 1 OS=Rattus norvegicus GN=Skp1 PE=2 SV=3)

HSP 1 Score: 178.333 bits (451), Expect = 3.609e-44
Identity = 91/159 (57.23%), Postives = 117/159 (73.58%), Query Frame = 2
Query:   56 ITLKSSDGETFEVEETVALESQTIKHMVED-----DCADTVIPLPNVTSTILSKVIEYCKKHVEARSGDKKDDKSTE--DDLKTWDADFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 511
            I L+SSDGE FEV+  +A +S TIK M+ED     +  D  +PLPNV + IL KVI++C  H +     + D+   +  DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CX295085 vs. ExPASy Swiss-Prot
Match: SKP1_PONAB (S-phase kinase-associated protein 1 OS=Pongo abelii GN=SKP1 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.609e-44
Identity = 91/159 (57.23%), Postives = 117/159 (73.58%), Query Frame = 2
Query:   56 ITLKSSDGETFEVEETVALESQTIKHMVED-----DCADTVIPLPNVTSTILSKVIEYCKKHVEARSGDKKDDKSTE--DDLKTWDADFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 511
            I L+SSDGE FEV+  +A +S TIK M+ED     +  D  +PLPNV + IL KVI++C  H +     + D+   +  DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CX295085 vs. ExPASy Swiss-Prot
Match: SKP1_MOUSE (S-phase kinase-associated protein 1 OS=Mus musculus GN=Skp1 PE=1 SV=3)

HSP 1 Score: 178.333 bits (451), Expect = 3.609e-44
Identity = 91/159 (57.23%), Postives = 117/159 (73.58%), Query Frame = 2
Query:   56 ITLKSSDGETFEVEETVALESQTIKHMVED-----DCADTVIPLPNVTSTILSKVIEYCKKHVEARSGDKKDDKSTE--DDLKTWDADFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 511
            I L+SSDGE FEV+  +A +S TIK M+ED     +  D  +PLPNV + IL KVI++C  H +     + D+   +  DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CX295085 vs. ExPASy Swiss-Prot
Match: SKP1_MACFA (S-phase kinase-associated protein 1 OS=Macaca fascicularis GN=SKP1 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.609e-44
Identity = 91/159 (57.23%), Postives = 117/159 (73.58%), Query Frame = 2
Query:   56 ITLKSSDGETFEVEETVALESQTIKHMVED-----DCADTVIPLPNVTSTILSKVIEYCKKHVEARSGDKKDDKSTE--DDLKTWDADFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 511
            I L+SSDGE FEV+  +A +S TIK M+ED     +  D  +PLPNV + IL KVI++C  H +     + D+   +  DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CX295085 vs. ExPASy Swiss-Prot
Match: SKP1_HUMAN (S-phase kinase-associated protein 1 OS=Homo sapiens GN=SKP1 PE=1 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 3.609e-44
Identity = 91/159 (57.23%), Postives = 117/159 (73.58%), Query Frame = 2
Query:   56 ITLKSSDGETFEVEETVALESQTIKHMVED-----DCADTVIPLPNVTSTILSKVIEYCKKHVEARSGDKKDDKSTE--DDLKTWDADFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 511
            I L+SSDGE FEV+  +A +S TIK M+ED     +  D  +PLPNV + IL KVI++C  H +     + D+   +  DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
The following BLAST results are available for this feature:
BLAST of CX295085 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SKP1B_DICDI5.949e-4761.18SCF ubiquitin ligase complex protein SKP1b OS=Dict... [more]
ASK9_ARATH7.769e-4760.76SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK... [more]
ASK15_ARATH1.325e-4657.83SKP1-like protein 15 OS=Arabidopsis thaliana GN=AS... [more]
ASK16_ARATH1.620e-4453.61SKP1-like protein 16 OS=Arabidopsis thaliana GN=AS... [more]
SKP1_XENLA3.609e-4457.23S-phase kinase-associated protein 1 OS=Xenopus lae... [more]
SKP1_RAT3.609e-4457.23S-phase kinase-associated protein 1 OS=Rattus norv... [more]
SKP1_PONAB3.609e-4457.23S-phase kinase-associated protein 1 OS=Pongo abeli... [more]
SKP1_MOUSE3.609e-4457.23S-phase kinase-associated protein 1 OS=Mus musculu... [more]
SKP1_MACFA3.609e-4457.23S-phase kinase-associated protein 1 OS=Macaca fasc... [more]
SKP1_HUMAN3.609e-4457.23S-phase kinase-associated protein 1 OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionC05068D09SK DroRLeaf1 Citrus clementina cDNA clone C05068D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295085 ID=CX295085; Name=CX295085; organism=Citrus clementina; type=EST; length=728bp
GAGGATCGCTTTAGCGAAACCGTAACTCTCAGAAACGATGTCGTCTGAGA
AGAAGATCACTCTGAAGAGTTCGGACGGTGAGACGTTCGAGGTGGAGGAG
ACGGTGGCTCTCGAGTCGCAGACAATCAAGCACATGGTGGAGGACGACTG
CGCCGACACCGTAATCCCGCTGCCGAATGTGACGAGCACGATTCTCTCGA
AGGTTATCGAGTACTGCAAGAAGCACGTTGAGGCTAGGTCAGGGGACAAG
AAGGACGACAAGTCGACCGAGGATGATCTCAAGACCTGGGATGCAGACTT
CGTCAAGGTTGATCAGAATACCCTCTTTGATCTAATCTTGGCAGCCAATT
ACCTGAACATCAAGAGTTTGCTGGACTTGACCTGCCAAACTGTTGCAGAC
ATGATCAAGGGGAAGACTCCAGAGGAGATCCGCAAGACCTTCAACATCAA
GAATGACTTCTCTCCCGATGAAGAAGAGGAGGTTCGGAGAGAGAACCAAT
GGGCATTCGAGTGAAGGACTGAAGTGATGAAGGCTCGGTAATTAATATTT
GTGACAGGAATGTCGTTATAATGATAGTGGTCTTTTAGTATGTTGCCAGT
AGGTGTCTAGTATTGAACATCAACATTTCCTTTTGTCGTGAACCTGTGAA
TGCTGCTCGATATAAATGTCATTGAACCCTTGTCTATTGCATTATAGCTT
CGTTTCTTGTCTTTGCATGCTCTTCTTT
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