CX295085

Overview
NameCX295085
Unique NameCX295085
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14229 contig Ccv1_Contig14229:15..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295085 vs. ExPASy Swiss-Prot
Match: SKP1_CHICK (S-phase kinase-associated protein 1 OS=Gallus gallus GN=SKP1 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.609e-44
Identity = 91/159 (57.23%), Postives = 117/159 (73.58%), Query Frame = 2
Query:   56 ITLKSSDGETFEVEETVALESQTIKHMVED-----DCADTVIPLPNVTSTILSKVIEYCKKHVEARSGDKKDDKSTE--DDLKTWDADFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 511
            I L+SSDGE FEV+  +A +S TIK M+ED     +  D  +PLPNV + IL KVI++C  H +     + D+   +  DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CX295085 vs. ExPASy Swiss-Prot
Match: SKP1_CAVPO (S-phase kinase-associated protein 1 OS=Cavia porcellus GN=SKP1 PE=2 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 3.609e-44
Identity = 91/159 (57.23%), Postives = 117/159 (73.58%), Query Frame = 2
Query:   56 ITLKSSDGETFEVEETVALESQTIKHMVED-----DCADTVIPLPNVTSTILSKVIEYCKKHVEARSGDKKDDKSTE--DDLKTWDADFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 511
            I L+SSDGE FEV+  +A +S TIK M+ED     +  D  +PLPNV + IL KVI++C  H +     + D+   +  DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CX295085 vs. ExPASy Swiss-Prot
Match: SKP1_BOVIN (S-phase kinase-associated protein 1 OS=Bos taurus GN=SKP1 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.609e-44
Identity = 91/159 (57.23%), Postives = 117/159 (73.58%), Query Frame = 2
Query:   56 ITLKSSDGETFEVEETVALESQTIKHMVED-----DCADTVIPLPNVTSTILSKVIEYCKKHVEARSGDKKDDKSTE--DDLKTWDADFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 511
            I L+SSDGE FEV+  +A +S TIK M+ED     +  D  +PLPNV + IL KVI++C  H +     + D+   +  DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CX295085 vs. ExPASy Swiss-Prot
Match: ASK19_ARATH (SKP1-like protein 19 OS=Arabidopsis thaliana GN=ASK19 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.040e-44
Identity = 98/189 (51.85%), Postives = 121/189 (64.02%), Query Frame = 2
Query:   44 SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVE-----------ARSGDKK--------DD----KSTEDD---------LKTWDADFVK-VDQNTLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 511
            S KKI L SSDGE+F+VEE VA + Q + H++EDDCA   IP+PNVT  IL+KVIEYCKKHVE           +  GDK         DD    +STE D         L  WDA F+K  D  T+FD+ILAANYLN++ L DL  +T+AD IK  TPEE+R+ FNI+NDF+P+EEE +R EN W FE
Sbjct:    2 SSKKIVLTSSDGESFKVEEVVARKLQIVGHIIEDDCATNKIPIPNVTGEILAKVIEYCKKHVEDDDDVVETHESSTKGDKTVEEAKKKPDDVAVPESTEGDDEAEDKKEKLNEWDAKFMKDFDIKTIFDIILAANYLNVQGLFDLCSKTIADYIKDMTPEEVRELFNIENDFTPEEEEAIRNENAWTFE 190          
BLAST of CX295085 vs. ExPASy Swiss-Prot
Match: ASK5_ARATH (SKP1-like protein 5 OS=Arabidopsis thaliana GN=ASK5 PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.371e-43
Identity = 91/159 (57.23%), Postives = 118/159 (74.21%), Query Frame = 2
Query:   53 KITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEARSGDKKDDKSTEDDLKTWDADFVKVDQNT-LFDLILAANYLNIKSLLDLTCQTV-----ADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 511
            KI LKSSDG++FE++E VA +S  I HMVED CA  VIPL NVTS IL  VI+YC+KHV+++          E+DLK WDADF+K  + T LFD+++AANYLNI+SLLDLTC+TV     AD++ GKTP+EIR  FNI+ND + +E  ++R ENQWAF+
Sbjct:    4 KIMLKSSDGKSFEIDEDVARKSIAINHMVEDGCATDVIPLRNVTSKILKIVIDYCEKHVKSKE---------EEDLKEWDADFMKTIETTILFDVMMAANYLNIQSLLDLTCKTVSDLLQADLLSGKTPDEIRAHFNIENDLTAEEVAKIREENQWAFQ 153          
BLAST of CX295085 vs. ExPASy Swiss-Prot
Match: ASK18_ARATH (SKP1-like protein 18 OS=Arabidopsis thaliana GN=ASK18 PE=1 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 5.211e-43
Identity = 87/156 (55.77%), Postives = 113/156 (72.44%), Query Frame = 2
Query:   44 SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEARSGDKKDDKSTEDDLKTWDADFV-KVDQNTLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAF 508
            S  KI L SSDGE+FE++E VA +   I HM+ED+CA   IPL NVT  ILSK+IEY K HV   S ++ +D+  + +L +WDA F+ K+D  T+F +ILAANYLN + LL    QTVAD IK KTPEE+R+ FNI+NDF+P+EEEE+R+EN W F
Sbjct:    2 SSNKILLTSSDGESFEIDEAVARKFLIIVHMMEDNCAGEAIPLENVTGDILSKIIEYAKMHVNEPS-EEDEDEEAKKNLDSWDAKFMEKLDLETIFKIILAANYLNFEGLLGFASQTVADYIKDKTPEEVREIFNIENDFTPEEEEEIRKENAWTF 156          
BLAST of CX295085 vs. ExPASy Swiss-Prot
Match: ASK8_ARATH (SKP1-like protein 8 OS=Arabidopsis thaliana GN=ASK8 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.189e-41
Identity = 86/157 (54.78%), Postives = 115/157 (73.25%), Query Frame = 2
Query:   44 SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKH-VEARSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 511
            S KKI LKSS+G+TFE+EE  A + QTI HM+E +C D VI +  +TS IL  VIEYC KH V+A +        ++DDL+ WD +F++ D++T+F L  AAN+LN KSLL L  QTVADMIKG TP+++R+ FNI+ND +P+EE  +RREN+WAFE
Sbjct:    2 STKKIMLKSSEGKTFEIEEETARQCQTIAHMIEAECTDNVILVLKMTSEILEMVIEYCNKHHVDAAN------PCSDDDLEKWDKEFMEKDKSTIFALTNAANFLNNKSLLHLAGQTVADMIKGNTPKQMREFFNIENDLTPEEEAAIRRENKWAFE 152          
BLAST of CX295085 vs. ExPASy Swiss-Prot
Match: ASK17_ARATH (SKP1-like protein 17 OS=Arabidopsis thaliana GN=ASK17 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.328e-38
Identity = 80/156 (51.28%), Postives = 108/156 (69.23%), Query Frame = 2
Query:   44 SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEARSGDKKDDKSTEDDLKTWDADFVK-VDQNTLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAF 508
            S KKI L SSD E FE++E VA + Q + HM++DDCAD  I L NVT  IL+ +IEYCKKHV        DD   +++  TWDA+FVK +D +TLF L+ AA+YL +  L +L  Q +AD    KT  EIR+ FNI+ND++P+EEEE+R++N+WAF
Sbjct:    2 SSKKIVLTSSDDECFEIDEAVARKMQMVAHMIDDDCADKAIRLQNVTGKILAIIIEYCKKHV--------DDVEAKNEFVTWDAEFVKNIDMDTLFKLLDAADYLIVIGLKNLIAQAIADYTADKTVNEIRELFNIENDYTPEEEEELRKKNEWAF 149          
BLAST of CX295085 vs. ExPASy Swiss-Prot
Match: SKP1_SCHPO (Suppressor of kinetochore protein 1 OS=Schizosaccharomyces pombe GN=skp1 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.592e-38
Identity = 83/158 (52.53%), Postives = 115/158 (72.78%), Query Frame = 2
Query:   53 KITLKSSDGETFEVEETVALESQTIKHMVEDDCADTV-IPLPNVTSTILSKVIEYCKKHV-EARSGDKKDD-----KSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWA 505
            KI L SSD E F V++ +A  S  IK+M+ED     V IPLPNV+S +L KV+E+C+ H  +  SG +++      KST  D+  WD  F+ VDQ  LF+++LA+NYL+IK LLD  C+TVA+MI+GK+PE+IRKTFNI NDF+P+EEE++R+EN+WA
Sbjct:    3 KIKLISSDNEEFVVDQLIAERSMLIKNMLEDVGEINVPIPLPNVSSNVLRKVLEWCEHHKNDLYSGTEEESDIRLKKST--DIDEWDRKFMAVDQEMLFEIVLASNYLDIKPLLDTGCKTVANMIRGKSPEDIRKTFNIPNDFTPEEEEQIRKENEWA 158          
BLAST of CX295085 vs. ExPASy Swiss-Prot
Match: SKP1_YEAST (Suppressor of kinetochore protein 1 OS=Saccharomyces cerevisiae GN=SKP1 PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.195e-33
Identity = 75/186 (40.32%), Postives = 111/186 (59.68%), Query Frame = 2
Query:   56 ITLKSSDGETFEVEETVALESQTIKHMVED-----------------------------------DCADTVIPLPNVTSTILSKVIEYCKKHVEARSGDKKDDKSTED-DLKTWDADFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWA 505
            + L S +GE F V++ +A  S  +K+ + D                                   D  + V+P+PNV S++L KVIE+ + H ++   D+ DD S +   + +WD +F+KVDQ  L+++ILAANYLNIK LLD  C+ VA+MI+G++PEEIR+TFNI NDF+P+EE  +RREN+WA
Sbjct:    6 VVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSKDNNNGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWA 191          
The following BLAST results are available for this feature:
BLAST of CX295085 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SKP1_CHICK3.609e-4457.23S-phase kinase-associated protein 1 OS=Gallus gall... [more]
SKP1_CAVPO3.609e-4457.23S-phase kinase-associated protein 1 OS=Cavia porce... [more]
SKP1_BOVIN3.609e-4457.23S-phase kinase-associated protein 1 OS=Bos taurus ... [more]
ASK19_ARATH8.040e-4451.85SKP1-like protein 19 OS=Arabidopsis thaliana GN=AS... [more]
ASK5_ARATH1.371e-4357.23SKP1-like protein 5 OS=Arabidopsis thaliana GN=ASK... [more]
ASK18_ARATH5.211e-4355.77SKP1-like protein 18 OS=Arabidopsis thaliana GN=AS... [more]
ASK8_ARATH2.189e-4154.78SKP1-like protein 8 OS=Arabidopsis thaliana GN=ASK... [more]
ASK17_ARATH1.328e-3851.28SKP1-like protein 17 OS=Arabidopsis thaliana GN=AS... [more]
SKP1_SCHPO6.592e-3852.53Suppressor of kinetochore protein 1 OS=Schizosacch... [more]
SKP1_YEAST2.195e-3340.32Suppressor of kinetochore protein 1 OS=Saccharomyc... [more]

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Properties
Property NameValue
Genbank descriptionC05068D09SK DroRLeaf1 Citrus clementina cDNA clone C05068D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295085 ID=CX295085; Name=CX295085; organism=Citrus clementina; type=EST; length=728bp
GAGGATCGCTTTAGCGAAACCGTAACTCTCAGAAACGATGTCGTCTGAGA
AGAAGATCACTCTGAAGAGTTCGGACGGTGAGACGTTCGAGGTGGAGGAG
ACGGTGGCTCTCGAGTCGCAGACAATCAAGCACATGGTGGAGGACGACTG
CGCCGACACCGTAATCCCGCTGCCGAATGTGACGAGCACGATTCTCTCGA
AGGTTATCGAGTACTGCAAGAAGCACGTTGAGGCTAGGTCAGGGGACAAG
AAGGACGACAAGTCGACCGAGGATGATCTCAAGACCTGGGATGCAGACTT
CGTCAAGGTTGATCAGAATACCCTCTTTGATCTAATCTTGGCAGCCAATT
ACCTGAACATCAAGAGTTTGCTGGACTTGACCTGCCAAACTGTTGCAGAC
ATGATCAAGGGGAAGACTCCAGAGGAGATCCGCAAGACCTTCAACATCAA
GAATGACTTCTCTCCCGATGAAGAAGAGGAGGTTCGGAGAGAGAACCAAT
GGGCATTCGAGTGAAGGACTGAAGTGATGAAGGCTCGGTAATTAATATTT
GTGACAGGAATGTCGTTATAATGATAGTGGTCTTTTAGTATGTTGCCAGT
AGGTGTCTAGTATTGAACATCAACATTTCCTTTTGTCGTGAACCTGTGAA
TGCTGCTCGATATAAATGTCATTGAACCCTTGTCTATTGCATTATAGCTT
CGTTTCTTGTCTTTGCATGCTCTTCTTT
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