CX295085

Overview
NameCX295085
Unique NameCX295085
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14229 contig Ccv1_Contig14229:15..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295085 vs. ExPASy Swiss-Prot
Match: ASK7_ARATH (SKP1-like protein 7 OS=Arabidopsis thaliana GN=ASK7 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.378e-27
Identity = 67/122 (54.92%), Postives = 85/122 (69.67%), Query Frame = 2
Query:   44 SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKK-HVEARSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 406
            S KKI LKSSDG+ FE+EE  A + QTI HM+E +C D VIP+ NVTS IL  VIEYC K HV+A       +  +++DLK WD +F++ DQ T+F L+ AA  L+IKSLL L  QTVADM+
Sbjct:    2 STKKIMLKSSDGKMFEIEEETARQCQTIAHMIEAECTDNVIPVSNVTSEILEMVIEYCNKHHVDAA------NPCSDEDLKKWDKEFMEKDQYTIFHLMNAAYDLHIKSLLALAYQTVADMV 117          
BLAST of CX295085 vs. ExPASy Swiss-Prot
Match: ASK6_ARATH (SKP1-like protein 6 OS=Arabidopsis thaliana GN=ASK6 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.130e-21
Identity = 55/87 (63.22%), Postives = 66/87 (75.86%), Query Frame = 2
Query:  125 IKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEARSGDKKDDKSTEDDLKTWDADFV-KVDQNTLFDLILAANYLNIKSLLDLT 382
            IK M EDDCAD  IPLPNVTS IL  VIEYCKKHV          +S E+DLK WDA+F+ K++Q+ LFD+++AANYLNI+SLLDLT
Sbjct:    3 IKGMAEDDCADNGIPLPNVTSKILLLVIEYCKKHVV---------ESKEEDLKKWDAEFMKKMEQSILFDVMMAANYLNIQSLLDLT 80          
BLAST of CX295085 vs. ExPASy Swiss-Prot
Match: ASK21_ARATH (SKP1-like protein 21 OS=Arabidopsis thaliana GN=ASK21 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.523e-13
Identity = 55/165 (33.33%), Postives = 93/165 (56.36%), Query Frame = 2
Query:    5 IALAKP*LSETMSSEKKITLKSSDGETFEVEETVALESQTI-KHMVEDDCADT---VIPLPN-VTSTILSKVIEYCKKH-VEARSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEE 481
            +A+ KP   E M S   I L+++DG   +VE+ VA+    I + +++     +    I LP  V   +LS + +YC+ H V  RS  ++         K +D  F+++D   L +L  AA+ L +K L+DLT + +A +I+GKTPEEIR+ F++ +D + +E+ E
Sbjct:    6 MAIIKP---EMMKSY--IWLETADGSIQQVEQEVAMFCPMICQEVIQKGVGSSKNYAISLPQRVNPAMLSLIFDYCRFHQVPGRSNKER---------KVYDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLE 156          
BLAST of CX295085 vs. ExPASy Swiss-Prot
Match: ASK20_ARATH (SKP1-like protein 20 OS=Arabidopsis thaliana GN=ASK20 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.523e-13
Identity = 54/165 (32.73%), Postives = 94/165 (56.97%), Query Frame = 2
Query:    5 IALAKP*LSETMSSEKKITLKSSDGETFEVEETVALESQTI-KHMVEDDCADT---VIPLPN-VTSTILSKVIEYCKKH-VEARSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEE 481
            +A+ KP   ETM S   I L+++DG   +VE+ VA+    I + +++     +    I LP  V   + S +++YC+ H +  RS  ++         KT+D  F+++D   L +L  AA+ L +K L+DLT + +A +I+GK PEEIR+ F++ +D + +E+ E
Sbjct:    6 LAVMKP---ETMKSY--IWLQTADGSIQQVEQEVAMFCPMICQEVIQKGVGSSKNHAISLPQRVNPAMFSLILDYCRFHQLPGRSNKER---------KTYDERFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKNPEEIREIFHLPDDLTEEEKLE 156          
The following BLAST results are available for this feature:
BLAST of CX295085 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
ASK7_ARATH1.378e-2754.92SKP1-like protein 7 OS=Arabidopsis thaliana GN=ASK... [more]
ASK6_ARATH1.130e-2163.22SKP1-like protein 6 OS=Arabidopsis thaliana GN=ASK... [more]
ASK21_ARATH2.523e-1333.33SKP1-like protein 21 OS=Arabidopsis thaliana GN=AS... [more]
ASK20_ARATH2.523e-1332.73SKP1-like protein 20 OS=Arabidopsis thaliana GN=AS... [more]

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Properties
Property NameValue
Genbank descriptionC05068D09SK DroRLeaf1 Citrus clementina cDNA clone C05068D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295085 ID=CX295085; Name=CX295085; organism=Citrus clementina; type=EST; length=728bp
GAGGATCGCTTTAGCGAAACCGTAACTCTCAGAAACGATGTCGTCTGAGA
AGAAGATCACTCTGAAGAGTTCGGACGGTGAGACGTTCGAGGTGGAGGAG
ACGGTGGCTCTCGAGTCGCAGACAATCAAGCACATGGTGGAGGACGACTG
CGCCGACACCGTAATCCCGCTGCCGAATGTGACGAGCACGATTCTCTCGA
AGGTTATCGAGTACTGCAAGAAGCACGTTGAGGCTAGGTCAGGGGACAAG
AAGGACGACAAGTCGACCGAGGATGATCTCAAGACCTGGGATGCAGACTT
CGTCAAGGTTGATCAGAATACCCTCTTTGATCTAATCTTGGCAGCCAATT
ACCTGAACATCAAGAGTTTGCTGGACTTGACCTGCCAAACTGTTGCAGAC
ATGATCAAGGGGAAGACTCCAGAGGAGATCCGCAAGACCTTCAACATCAA
GAATGACTTCTCTCCCGATGAAGAAGAGGAGGTTCGGAGAGAGAACCAAT
GGGCATTCGAGTGAAGGACTGAAGTGATGAAGGCTCGGTAATTAATATTT
GTGACAGGAATGTCGTTATAATGATAGTGGTCTTTTAGTATGTTGCCAGT
AGGTGTCTAGTATTGAACATCAACATTTCCTTTTGTCGTGAACCTGTGAA
TGCTGCTCGATATAAATGTCATTGAACCCTTGTCTATTGCATTATAGCTT
CGTTTCTTGTCTTTGCATGCTCTTCTTT
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