CX295090

Overview
NameCX295090
Unique NameCX295090
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295090 vs. ExPASy Swiss-Prot
Match: TPS3_ARATH (Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 3 OS=Arabidopsis thaliana GN=TPS3 PE=3 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 4.163e-34
Identity = 77/212 (36.32%), Postives = 130/212 (61.32%), Query Frame = 1
Query:    1 ILRALLNSDLIGFHTFDYARHFLSCCSRMLGL--TYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSLPGTEAKVSELIKQFHDQGKVMLLGVDDMDIFKGISLKLLAMEQLLIQHPEWQGKVVLVQIANPARGRGKDVKEVQAETYSTVERINQTFGKPGYDPVVLIDEPLKFYERIAYYVVAECCLVTAVRDGMNLIPYEYIISRQ 630
            +LR++L +DLI FHT+D+ARHF++ C+R+LG+  T+E      G+ Y GR   + +LP+GI+  +      LP    +++EL  +F   GK ++LGVD +D+ KGI  K L  E+ L ++P W+ K+VLVQIA P R    + ++++ + +  V RIN  FG     P+  +D  +      A Y +++  LVT++RDG+NL+ +E++  ++
Sbjct:  176 LLRSVLAADLISFHTYDFARHFVNTCTRILGVEGTHE------GVVYQGRVTRVVVLPMGIYPNRFIKTCKLPEVIQQMNELKDRF--SGKKVILGVDRLDMIKGIPQKYLGFEKFLDENPNWRDKIVLVQIAVPTRNEVPEYQKLKNQVHRLVGRINGRFGSVSSLPIHHMDCSVDSNYLCALYAISDVMLVTSLRDGLNLVSHEFVACQE 379          
BLAST of CX295090 vs. ExPASy Swiss-Prot
Match: TPS4_ARATH (Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 4 OS=Arabidopsis thaliana GN=TPS4 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.089e-32
Identity = 74/215 (34.42%), Postives = 129/215 (60.00%), Query Frame = 1
Query:    1 ILRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSLPGTEAKVSELIKQFHDQ--GKVMLLGVDDMDIFKGISLKLLAMEQLLIQHPEWQGKVVLVQIANPARGRGKDVKEVQAETYSTVERINQTFGKPGYDPVVLIDEPLKFYERIAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNE 639
            +LR++L +DL+GFHT+D+ARHFL+ C  +LG+   S+    G+   G+   + + P+GI   +  +   L    ++V + +K+F +   G+ ++LGVD +D  KGI  K  A E+ L ++ EW+GKV+L+QIA P R    + ++++ + +  V RIN  FG     P++ +D  + F +  A Y + +  LVT++RDGMNL+  E+I  ++  +
Sbjct:  190 LLRSVLTADLVGFHTYDFARHFLNACMCILGVEATSE----GIVDQGKVTRVAVFPIGIEPERFINTSEL----SEVVQYMKKFKNDFGGRKLILGVDRLDTIKGIPQKYQAFEKFLEENAEWRGKVMLLQIAVPTRNGIGEYQKIKDQCHYHVGRINGRFGSISSVPIIHLDCSIDFNQLCALYAITDVLLVTSLRDGMNLVSSEFIACQKAEK 396          
BLAST of CX295090 vs. ExPASy Swiss-Prot
Match: TPSB_DICDI (Alpha,alpha-trehalose-phosphate synthase [UDP-forming] B OS=Dictyostelium discoideum GN=tpsB PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.481e-31
Identity = 80/220 (36.36%), Postives = 126/220 (57.27%), Query Frame = 1
Query:    1 ILRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGLEYY--GRT--VSIKILPVGIHMGQLQSVLSLPGTEAKVSELIKQFHDQGKVMLLGVDDMDIFKGISLKLLAMEQLLIQHPEWQGKVVLVQIANPARGRGKDVKEVQAETYSTVE----RINQTFGKPGYDPVVLIDEPLKFYERIAYYVVAECCLVTAVRDGMNLIPYEYIISRQGN 636
            +L+ +L+S+LIGF +F+Y RHF S C+R+L L    K    GLE +  G T    +++ P+G+        L+LP   ++V  L K F  +GK +++  D +D  +G+  KL   EQLL  HPE+ GK+V +QI  P    G +  E Q   + TV     RIN  FGK  ++P+  I++ + + E  A Y +A+  L+T +RDGMNL  +EY++ ++ N
Sbjct:  236 LLKGILSSNLIGFQSFEYVRHFKSSCARLLDLEVHPK----GLEIFEDGSTHFTKLQVYPIGVDYNDFAKNLNLPEVSSRVESLRKIF--KGKKVVVARDRLDQIEGVPRKLEVFEQLLNDHPEYIGKLVFIQIYEPTVEEGDETDE-QKILHKTVNEMVGRINGKFGKLSFNPIEYINKKISYEELSALYKLADIALITPIRDGMNLTSHEYVVCQKDN 448          
BLAST of CX295090 vs. ExPASy Swiss-Prot
Match: TPP1_SCHPO (Trehalose-phosphatase OS=Schizosaccharomyces pombe GN=tpp1 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.136e-23
Identity = 68/222 (30.63%), Postives = 122/222 (54.95%), Query Frame = 1
Query:    1 ILRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSLPGTEAKVSELIKQFHDQGKVMLLGVDDMDIFKGISLKLLAMEQLLIQHPEWQGKVVLVQIANPARGRGKDVKEVQAETYSTVERINQTFGKPGYDPVVLIDEPLKFYERIAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNEKLDKVLGSE 666
            ILR++L +D IGF  + YARHF+SCCSR+L L    + G+  +   G  V+++ + VGI + ++           K+ EL K++  +   ++LG D +D   G+  KL + ++ L  +PEW+ KVVL+QI   +  +     ++ +     V+ INQ FG   Y PV  ++E L+  +  A    A+   + ++R+G++ +  EY++ ++  ++   VL SE
Sbjct:  260 ILRSVLGADFIGFEDYSYARHFISCCSRVLDL----EIGHDWVNLNGNKVTVRAITVGIDVPRIIRSSGNVSVSEKLEELNKRY--ENMKVILGRDRLDELYGVPQKLRSFQRFLRTYPEWRKKVVLIQITISSAFKH---PKLLSSIKKLVQAINQEFGTDDYTPVHHVEEQLEPADYFALLTRADALFINSIREGVSNLALEYVVCQR--DRYGMVLLSE 470          
BLAST of CX295090 vs. ExPASy Swiss-Prot
Match: OTSA_MYCGI (Trehalose-phosphate synthase OS=Mycobacterium gilvum (strain PYR-GCK) GN=otsA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.531e-23
Identity = 70/216 (32.41%), Postives = 112/216 (51.85%), Query Frame = 1
Query:    1 ILRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGL-------EYYGRTVSIKILPVGIHMGQLQSVLSLPGTEAKVSELIKQFHDQGKVMLLGVDDMDIFKGISLKLLAMEQLLIQHPEWQGKVVLVQIANPARGRGKDVKEVQAETYSTVERINQTFGKPGYDPVVLIDEPLKFYERIAYYVVAECCLVTAVRDGMNLIPYEYIISR 627
            I+  LL +DL+GFH    A++FL    R+LG    + RG +G+       ++  R V +   P+ I   +L        T  +  E+  +  +  KV LLGVD +D  KGI ++L A  +LL +        VLVQ+A P+R R +   E++ +    V  +N  FGK G+  +  +  P+   + +A++V A+  LVT +RDGMNL+  EY+  R
Sbjct:  205 IIEGLLGADLVGFHLPGGAQNFLILARRLLGAV--TSRGNVGVRSRFGEVQFGFRKVKVGAFPISIDSAELDQHARTRATRQRAKEIRAELGNPRKV-LLGVDRLDYTKGIDVRLRAFSELLEEGRIDPEDTVLVQLATPSRERVQSYIEMREDIERQVGHVNGEFGKVGHPVLHYLHRPIPREDLVAFFVAADVMLVTPLRDGMNLVAKEYVACR 417          
BLAST of CX295090 vs. ExPASy Swiss-Prot
Match: TSL1_YEAST (Trehalose synthase complex regulatory subunit TSL1 OS=Saccharomyces cerevisiae GN=TSL1 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.306e-23
Identity = 75/210 (35.71%), Postives = 119/210 (56.67%), Query Frame = 1
Query:    1 ILRALLNSDLIGFHTFDYARHFLSCCSRML--GLTYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSLPGTEAKVSELIKQFHDQGKVMLLGVDDMDIFKGISLKLLAMEQLLIQHPEWQGKVVLVQIANPARGRGKDVKEVQAETYSTVERINQTFGKPGY-DPVVLIDEPLKFYERIAYYVVAECCLVTAVRDGMNLIPYEYII 621
            IL  L  +D +GF T +YARHFL   +R+L   + ++ +     L+Y GR VS++  PVGI    LQS L   G+  +  +LI++   QGK +++  D  D  +GI  KLLA E+ L+++PE+  K  L+QI     G  KDV E++ +    V+RIN          PVV + + L F + +A    A+  +V+++R+GMNL  +E+I+
Sbjct:  521 ILEGLTGADFVGFQTREYARHFLQTSNRLLMADVVHDEE-----LKYNGRVVSVRFTPVGIDAFDLQSQLK-DGSVMQWRQLIRE-RWQGKKLIVCRDQFDRIRGIHKKLLAYEKFLVENPEYVEKSTLIQI---CIGSSKDV-ELERQIMIVVDRINSLSTNISISQPVVFLHQDLDFSQYLALSSEADLFVVSSLREGMNLTCHEFIV 719          
BLAST of CX295090 vs. ExPASy Swiss-Prot
Match: OTSA_MYCVP (Trehalose-phosphate synthase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=otsA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.318e-23
Identity = 68/216 (31.48%), Postives = 113/216 (52.31%), Query Frame = 1
Query:    1 ILRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGL-------EYYGRTVSIKILPVGIHMGQLQSVLSLPGTEAKVSELIKQFHDQGKVMLLGVDDMDIFKGISLKLLAMEQLLIQHPEWQGKVVLVQIANPARGRGKDVKEVQAETYSTVERINQTFGKPGYDPVVLIDEPLKFYERIAYYVVAECCLVTAVRDGMNLIPYEYIISR 627
            I+  LL +DL+GFH    A++FL    R++G T  + RG +G+       ++  RTV +   P+ I   +L        T  +  E+  +  +  K+ LLGVD +D  KGI ++L A  +LL +        VLVQ+A P+R R +    ++ +    V  +N  FG+ G+  +  +  P+   + +A++V A+  LVT +RDGMNL+  EY+  R
Sbjct:  196 IIEGLLGADLVGFHLPGGAQNFLILARRLIGAT--TSRGNVGVRSRFGEVQFGFRTVKVGAFPISIDSAELDQHARSRATRQRAKEIRAELGNPRKI-LLGVDRLDYTKGIDVRLRAFSELLEEGRIDPEDTVLVQLATPSRERVESYVAMREDIERQVGHVNGEFGEVGHPVLHYLHRPIPREDLVAFFVAADVMLVTPLRDGMNLVAKEYVACR 408          
BLAST of CX295090 vs. ExPASy Swiss-Prot
Match: OTSA_MYCPA (Trehalose-phosphate synthase OS=Mycobacterium paratuberculosis GN=otsA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.318e-23
Identity = 70/216 (32.41%), Postives = 111/216 (51.39%), Query Frame = 1
Query:    1 ILRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGL-------EYYGRTVSIKILPVGIHMGQLQSVLSLPGTEAKVSELIKQFHDQGKVMLLGVDDMDIFKGISLKLLAMEQLLIQHPEWQGKVVLVQIANPARGRGKDVKEVQAETYSTVERINQTFGKPGYDPVVLIDEPLKFYERIAYYVVAECCLVTAVRDGMNLIPYEYIISR 627
            I++ LL +DL+GFH    A++FL    R++G    + RG +G+       E   R V +   P+ I    L           +  E+  +  +  KV LLGVD +D  KGI ++L A  +LL +    +   VLVQ+A P+R R    ++++ +    V  IN  +G+ G+  V  +  P+   E IA++V A+  LVT +RDGMNL+  EY+  R
Sbjct:  197 IVKGLLGADLVGFHLTGGAQNFLFLSRRLIGAN--TSRGAVGMRSRYGEVELESRVVRVGAFPISIDSTALDQTARHRDIRRRAREIRAELGNPRKV-LLGVDRLDYTKGIDVRLKAFSELLAEGRAKRDDTVLVQLATPSRERVDSYQQLRNDIERQVGHINGEYGEVGHPVVHYLHRPVPRNELIAFFVAADVMLVTPLRDGMNLVAKEYVACR 409          
BLAST of CX295090 vs. ExPASy Swiss-Prot
Match: OTSA_MYCA1 (Trehalose-phosphate synthase OS=Mycobacterium avium (strain 104) GN=otsA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.639e-23
Identity = 70/216 (32.41%), Postives = 111/216 (51.39%), Query Frame = 1
Query:    1 ILRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGL-------EYYGRTVSIKILPVGIHMGQLQSVLSLPGTEAKVSELIKQFHDQGKVMLLGVDDMDIFKGISLKLLAMEQLLIQHPEWQGKVVLVQIANPARGRGKDVKEVQAETYSTVERINQTFGKPGYDPVVLIDEPLKFYERIAYYVVAECCLVTAVRDGMNLIPYEYIISR 627
            I++ LL +DL+GFH    A++FL    R++G    + RG +G+       E   R V +   P+ I    L           +  E+  +  +  KV LLGVD +D  KGI ++L A  +LL +    +   VLVQ+A P+R R    ++++ +    V  IN  +G+ G+  V  +  P+   E IA++V A+  LVT +RDGMNL+  EY+  R
Sbjct:  197 IVKGLLGADLVGFHLTGGAQNFLFLSRRLIGAN--TSRGAVGVRSRYGEVELESRVVRVGAFPISIDSTALDQTARHRDIRRRAREIRAELGNPRKV-LLGVDRLDYTKGIDVRLKAFSELLAEGRAKRDDTVLVQLATPSRERVDSYQQLRNDIERQVGHINGEYGEVGHPVVHYLHRPVPRNELIAFFVAADVMLVTPLRDGMNLVAKEYVACR 409          
BLAST of CX295090 vs. ExPASy Swiss-Prot
Match: OTSA_MYCLE (Trehalose-phosphate synthase OS=Mycobacterium leprae GN=otsA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.619e-23
Identity = 68/216 (31.48%), Postives = 110/216 (50.93%), Query Frame = 1
Query:    1 ILRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGL-------EYYGRTVSIKILPVGIHMGQLQSVLSLPGTEAKVSELIKQFHDQGKVMLLGVDDMDIFKGISLKLLAMEQLLIQHPEWQGKVVLVQIANPARGRGKDVKEVQAETYSTVERINQTFGKPGYDPVVLIDEPLKFYERIAYYVVAECCLVTAVRDGMNLIPYEYIISR 627
            I+  LL +DL+GFH    A++FL     +LG    + RG +G+       +    TV +   P+ I   ++           +  E+  +  +  K+ LLGVD +D  KGI ++L A  +LL +    +   VLVQ+A P+R R +  K ++ +    V  IN  +G+ G+  V  +  P+   E IA+YV ++  LVT +RDGMNL+  EY+  R
Sbjct:  202 IIEGLLGADLVGFHLTSGAQNFLFLSRHLLGAN--TSRGLVGVRSRFGEVQLKSHTVQVGAFPISIDSKEIDQATRDRNVRRRAREIRAELGNPRKI-LLGVDRLDYTKGIDVRLRAFAELLAEGRAKRDDTVLVQLATPSRERVESYKILRNDIERQVGHINGEYGEVGHPVVHYLHRPIPRDELIAFYVASDVMLVTPLRDGMNLVAKEYVACR 414          
The following BLAST results are available for this feature:
BLAST of CX295090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
TPS3_ARATH4.163e-3436.32Probable alpha,alpha-trehalose-phosphate synthase ... [more]
TPS4_ARATH5.089e-3234.42Probable alpha,alpha-trehalose-phosphate synthase ... [more]
TPSB_DICDI1.481e-3136.36Alpha,alpha-trehalose-phosphate synthase [UDP-form... [more]
TPP1_SCHPO1.136e-2330.63Trehalose-phosphatase OS=Schizosaccharomyces pombe... [more]
OTSA_MYCGI2.531e-2332.41Trehalose-phosphate synthase OS=Mycobacterium gilv... [more]
TSL1_YEAST3.306e-2335.71Trehalose synthase complex regulatory subunit TSL1... [more]
OTSA_MYCVP4.318e-2331.48Trehalose-phosphate synthase OS=Mycobacterium vanb... [more]
OTSA_MYCPA4.318e-2332.41Trehalose-phosphate synthase OS=Mycobacterium para... [more]
OTSA_MYCA15.639e-2332.41Trehalose-phosphate synthase OS=Mycobacterium aviu... [more]
OTSA_MYCLE9.619e-2331.48Trehalose-phosphate synthase OS=Mycobacterium lepr... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05068E02SK DroRLeaf1 Citrus clementina cDNA clone C05068E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295090 ID=CX295090; Name=CX295090; organism=Citrus clementina; type=EST; length=699bp
ATTCTGCGGGCCCTGTTGAATTCTGATTTAATTGGGTTCCATACTTTTGA
TTATGCACGGCATTTCTTGTCCTGCTGTAGTCGAATGCTAGGTCTTACCT
ATGAATCGAAGAGAGGTTACATAGGCCTTGAGTATTATGGTAGGACTGTT
AGTATCAAGATTCTTCCGGTGGGTATTCACATGGGTCAGCTTCAGTCAGT
TTTGAGTCTCCCTGGAACGGAGGCAAAGGTTTCTGAGCTCATTAAGCAGT
TCCATGATCAGGGTAAGGTGATGTTGCTTGGGGTAGATGATATGGACATA
TTTAAGGGCATAAGTTTGAAGCTGTTGGCCATGGAACAGTTACTCATTCA
ACACCCAGAGTGGCAGGGGAAGGTTGTACTGGTGCAGATAGCAAATCCTG
CTAGGGGCCGGGGAAAAGACGTGAAAGAAGTGCAGGCTGAGACATACTCG
ACTGTGGAGCGGATCAATCAAACTTTTGGGAAACCTGGATATGATCCCGT
TGTCTTGATTGATGAGCCACTTAAGTTTTATGAGAGAATTGCATATTATG
TGGTTGCAGAGTGTTGTTTGGTCACTGCAGTTAGAGATGGTATGAATCTC
ATACCATATGAATACATAATCAGCCGCCAAGGAAATGAGAAATTGGACAA
GGTTTTAGGTTCGGAGCCATCATCCCCAAAGAAGAGCATGTTGGTTGTT
back to top