CX295090

Overview
NameCX295090
Unique NameCX295090
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11232 contig Ccv1_Contig11232:555..1253. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295090 vs. ExPASy Swiss-Prot
Match: OTSA_ECOL5 (Alpha,alpha-trehalose-phosphate synthase [UDP-forming] OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=otsA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.345e-16
Identity = 56/211 (26.54%), Postives = 108/211 (51.18%), Query Frame = 1
Query:    1 ILRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGLEYYGRTVSIKILPVGIHMGQL--QSVLSLPGTEAKVSELIKQFHDQGKVMLLGVDDMDIFKGISLKLLAMEQLLIQHPEWQGKVVLVQIANPARGRGKDVKEVQAETYSTVERINQTFGKPGYDPVVLIDEPLKFYERIAYYVVAECCLVTAVRDGMNLIPYEYIISR 627
            +L  L + DL+GF T +    FL C S +  +T  S + +      G+    ++ P+GI   ++  Q+   LP   A++   +K   +     +  V+ +D  KG+  + LA E LL ++P+  GK+   QIA  +RG  +  ++++ +  +   RIN  +G+ G+ P+  +++       +  +  ++  LVT +RDGMNL+  EY+ ++
Sbjct:  173 LLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTAC---GKAFRTEVYPIGIEPKEIAKQAAGPLPPKLAQLKAELKNVQN-----IFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQ 375          
BLAST of CX295090 vs. ExPASy Swiss-Prot
Match: OTSA_ECOUT (Alpha,alpha-trehalose-phosphate synthase [UDP-forming] OS=Escherichia coli (strain UTI89 / UPEC) GN=otsA PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.757e-16
Identity = 56/211 (26.54%), Postives = 107/211 (50.71%), Query Frame = 1
Query:    1 ILRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGLEYYGRTVSIKILPVGIHMGQL--QSVLSLPGTEAKVSELIKQFHDQGKVMLLGVDDMDIFKGISLKLLAMEQLLIQHPEWQGKVVLVQIANPARGRGKDVKEVQAETYSTVERINQTFGKPGYDPVVLIDEPLKFYERIAYYVVAECCLVTAVRDGMNLIPYEYIISR 627
            +L  L   DL+GF T +    FL C S +  +T  S + +      G+    ++ P+GI   ++  Q+   LP   A++   +K   +     +  V+ +D  KG+  + LA E LL ++P+  GK+   QIA  +RG  +  ++++ +  +   RIN  +G+ G+ P+  +++       +  +  ++  LVT +RDGMNL+  EY+ ++
Sbjct:  173 LLEQLCEYDLLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTAC---GKAFRTEVYPIGIEPKEIAKQAAGPLPPKLAQLKAELKNVQN-----IFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQ 375          
BLAST of CX295090 vs. ExPASy Swiss-Prot
Match: OTSA_ECOK1 (Alpha,alpha-trehalose-phosphate synthase [UDP-forming] OS=Escherichia coli O1:K1 / APEC GN=otsA PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.757e-16
Identity = 56/211 (26.54%), Postives = 107/211 (50.71%), Query Frame = 1
Query:    1 ILRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGLEYYGRTVSIKILPVGIHMGQL--QSVLSLPGTEAKVSELIKQFHDQGKVMLLGVDDMDIFKGISLKLLAMEQLLIQHPEWQGKVVLVQIANPARGRGKDVKEVQAETYSTVERINQTFGKPGYDPVVLIDEPLKFYERIAYYVVAECCLVTAVRDGMNLIPYEYIISR 627
            +L  L   DL+GF T +    FL C S +  +T  S + +      G+    ++ P+GI   ++  Q+   LP   A++   +K   +     +  V+ +D  KG+  + LA E LL ++P+  GK+   QIA  +RG  +  ++++ +  +   RIN  +G+ G+ P+  +++       +  +  ++  LVT +RDGMNL+  EY+ ++
Sbjct:  173 LLEQLCEYDLLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTAC---GKAFRTEVYPIGIEPKEIAKQAAGPLPPKLAQLKAELKNVQN-----IFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQ 375          
BLAST of CX295090 vs. ExPASy Swiss-Prot
Match: TPS1_CAEEL (Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 OS=Caenorhabditis elegans GN=tps-1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.997e-16
Identity = 62/216 (28.70%), Postives = 104/216 (48.15%), Query Frame = 1
Query:    1 ILRALLNSDLIGFHTFDYARHFLSCCSRMLGLT---YESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSLPGTEAKVSELIKQFHDQ---GKVMLLGVDDMDIFKGISLKLLAMEQLLIQHPEWQGKVVLVQIANPARGRGKDVKEVQAETYSTVERINQTFGK---PGYDPVVLIDEPLKFYERIAYYVVAECCLVTAVRDGMNLIPYEYII 621
            I+RALL    +GF T      F+   ++ +  T   Y+S+     +E+ G T S+ + PV I +    ++   P T  +  E+ KQ   +   G  +   V+  D  KGIS KL A ++   ++P+  GK VL Q+A   R      ++ Q +  +  + INQ F     P + PV+   + L     IA+Y+  +  +VT  +DGMNL+  E ++
Sbjct:  564 IMRALLRFTKVGFQTSRDRDTFVKLVAKHIKRTKIEYDSRLDRYTIEHDGWTCSLGVFPVSIKIADFVNIAKNPQTIIEAEEIKKQIMGRSADGGQLFFSVERFDYTKGISEKLRAWQRYFEKYPDRIGKDVLFQVAVTNRRSVDSYRQYQDDVLAVADLINQKFKSEDYPEWKPVIFETDGLPRTRLIAHYLAMDIGVVTPSKDGMNLVAKEMLV 779          
BLAST of CX295090 vs. ExPASy Swiss-Prot
Match: OTSA_ENTS8 (Alpha,alpha-trehalose-phosphate synthase [UDP-forming] OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=otsA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.997e-16
Identity = 56/209 (26.79%), Postives = 105/209 (50.24%), Query Frame = 1
Query:    1 ILRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSLPGTEAKVSELIKQFHDQGKVMLLGVDDMDIFKGISLKLLAMEQLLIQHPEWQGKVVLVQIANPARGRGKDVKEVQAETYSTVERINQTFGKPGYDPVVLIDEPLKFYERIAYYVVAECCLVTAVRDGMNLIPYEYIISR 627
            +L  L + DL+GF T +    FL C +    L+  S   Y     YG+T   ++ P+GI   ++    + P    K+++L  +      +    V+ +D  KG+  +  A E LL ++PE  GK+   QIA  +RG  +  ++++ +  +   RIN  +G+ G+ P+  +++       +  +  ++  LVT +RDGMNL+  EY+ ++
Sbjct:  173 LLEQLCDYDLLGFQTENDRTAFLDCLAMQTHLSTSSDGEYTA---YGKTFRTEVYPIGIEPEEIAQASAGP-LPPKLAQLKAELASVKNIF--SVERLDYSKGLPERFQAFETLLEKYPEHHGKIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKVFRYSDVGLVTPLRDGMNLVAKEYVAAQ 375          
BLAST of CX295090 vs. ExPASy Swiss-Prot
Match: GGPS_SYNP2 (Glucosylglycerol-phosphate synthase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ggpS PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.997e-16
Identity = 58/226 (25.66%), Postives = 104/226 (46.02%), Query Frame = 1
Query:    1 ILRALLNSDLIGFHTFDYARHFLSCCSRM------------------LGLTYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSLPGTEAKVSELIKQFHDQGKVMLLGVDDMDIFKGISLKLLAMEQLLIQHPEWQGKVVLVQIANPARGRGKDVKEVQAETYSTVERINQTFGKPGYDPVVLIDEPLKFYERIAYYVVAECCLVTAVRDGMNLIPYEYIIS 624
            I+ +LL  DL GFH   Y ++F++    +                  +G           L+Y    V++   PVG +  Q+++ +    T+ ++ ++ ++       ++L    +D  KG    L+  E+LL + PE Q KV LV  A  A    +  K  Q+E    V RIN  F K  + P++L    L + E + ++  A+   +T +RDG+NL+  EY+++
Sbjct:  188 IVDSLLCCDLCGFHLPRYVQNFVAVARSLRKVEITRQVPVDEHAFTAVGTALAEPEITTQLKYKDHLVNLDAFPVGTNPTQIRAQVEKASTQERIRKIREELGSNK--LILSAGRVDYVKGTKEMLVCYERLLERRPELQTKVNLVVAAAKAASGMRVYKNAQSEIERLVGRINGRFAKLNWTPILLFTSALSYEELLGFFGAADIAWITPLRDGLNLVAKEYVVA 411          
BLAST of CX295090 vs. ExPASy Swiss-Prot
Match: OTSA_SALTY (Alpha,alpha-trehalose-phosphate synthase [UDP-forming] OS=Salmonella typhimurium GN=otsA PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.139e-15
Identity = 56/211 (26.54%), Postives = 108/211 (51.18%), Query Frame = 1
Query:    1 ILRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGLEYYGRTVSIKILPVGIHMGQ--LQSVLSLPGTEAKVSELIKQFHDQGKVMLLGVDDMDIFKGISLKLLAMEQLLIQHPEWQGKVVLVQIANPARGRGKDVKEVQAETYSTVERINQTFGKPGYDPVVLIDEPLKFYERIAYYVVAECCLVTAVRDGMNLIPYEYIISR 627
            +L  L + DL+GF T +    FL   S    +T  S + +I    +G+    ++ P+GI   +  LQ+   LP   A++   +K   +     +  V+ +D  KG+  + LA E LL  +P+ +GK+   QIA  +RG  +  ++++ +  +   RIN  +G+ G+ P+  +++       +  +  ++  LVT +RDGMNL+  E++ ++
Sbjct:  172 LLEQLCDFDLLGFQTENDRLAFLDSLSSQTRVTTRSGKQHIA---WGKDFQTEVYPIGIEPDEIALQAAGPLPPKLAQLKAELKNVKN-----IFSVERLDYSKGLPERFLAYEALLENYPQHRGKIRYTQIAPTSRGEVQAYQDIRHQLETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEFVAAQ 374          
BLAST of CX295090 vs. ExPASy Swiss-Prot
Match: OTSA_SALTI (Alpha,alpha-trehalose-phosphate synthase [UDP-forming] OS=Salmonella typhi GN=otsA PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.139e-15
Identity = 56/211 (26.54%), Postives = 108/211 (51.18%), Query Frame = 1
Query:    1 ILRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGLEYYGRTVSIKILPVGIHMGQ--LQSVLSLPGTEAKVSELIKQFHDQGKVMLLGVDDMDIFKGISLKLLAMEQLLIQHPEWQGKVVLVQIANPARGRGKDVKEVQAETYSTVERINQTFGKPGYDPVVLIDEPLKFYERIAYYVVAECCLVTAVRDGMNLIPYEYIISR 627
            +L  L + DL+GF T +    FL   S    +T  S + +I    +G+    ++ P+GI   +  LQ+   LP   A++   +K   +     +  V+ +D  KG+  + LA E LL  +P+ +GK+   QIA  +RG  +  ++++ +  +   RIN  +G+ G+ P+  +++       +  +  ++  LVT +RDGMNL+  E++ ++
Sbjct:  172 LLEQLCDFDLLGFQTENDRLAFLDSLSSQTRVTTRSGKQHIA---WGKDFQTEVYPIGIEPDEIALQAAGPLPPKLAQLKAELKNVKN-----IFSVERLDYSKGLPERFLAYEALLENYPQHRGKIRYTQIAPTSRGEVQAYQDIRHQLETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEFVAAQ 374          
BLAST of CX295090 vs. ExPASy Swiss-Prot
Match: OTSA_SALPB (Alpha,alpha-trehalose-phosphate synthase [UDP-forming] OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=otsA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.139e-15
Identity = 56/211 (26.54%), Postives = 108/211 (51.18%), Query Frame = 1
Query:    1 ILRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGLEYYGRTVSIKILPVGIHMGQ--LQSVLSLPGTEAKVSELIKQFHDQGKVMLLGVDDMDIFKGISLKLLAMEQLLIQHPEWQGKVVLVQIANPARGRGKDVKEVQAETYSTVERINQTFGKPGYDPVVLIDEPLKFYERIAYYVVAECCLVTAVRDGMNLIPYEYIISR 627
            +L  L + DL+GF T +    FL   S    +T  S + +I    +G+    ++ P+GI   +  LQ+   LP   A++   +K   +     +  V+ +D  KG+  + LA E LL  +P+ +GK+   QIA  +RG  +  ++++ +  +   RIN  +G+ G+ P+  +++       +  +  ++  LVT +RDGMNL+  E++ ++
Sbjct:  172 LLEQLCDFDLLGFQTENDRLAFLDSLSSQTRVTTRSGKQHIA---WGKDFQTEVYPIGIEPDEIALQAAGPLPPKLAQLKAELKNVKN-----IFSVERLDYSKGLPERFLAYEALLENYPQHRGKIRYTQIAPTSRGEVQAYQDIRHQLETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEFVAAQ 374          
BLAST of CX295090 vs. ExPASy Swiss-Prot
Match: OTSA_SALPA (Alpha,alpha-trehalose-phosphate synthase [UDP-forming] OS=Salmonella paratyphi A GN=otsA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.139e-15
Identity = 56/211 (26.54%), Postives = 108/211 (51.18%), Query Frame = 1
Query:    1 ILRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGLEYYGRTVSIKILPVGIHMGQ--LQSVLSLPGTEAKVSELIKQFHDQGKVMLLGVDDMDIFKGISLKLLAMEQLLIQHPEWQGKVVLVQIANPARGRGKDVKEVQAETYSTVERINQTFGKPGYDPVVLIDEPLKFYERIAYYVVAECCLVTAVRDGMNLIPYEYIISR 627
            +L  L + DL+GF T +    FL   S    +T  S + +I    +G+    ++ P+GI   +  LQ+   LP   A++   +K   +     +  V+ +D  KG+  + LA E LL  +P+ +GK+   QIA  +RG  +  ++++ +  +   RIN  +G+ G+ P+  +++       +  +  ++  LVT +RDGMNL+  E++ ++
Sbjct:  172 LLEQLCDFDLLGFQTENDRLAFLDSLSSQTRVTTRSGKQHIA---WGKDFQTEVYPIGIEPDEIALQAAGPLPPKLAQLKAELKNVKN-----IFSVERLDYSKGLPERFLAYEALLENYPQHRGKIRYTQIAPTSRGEVQAYQDIRHQLETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEFVAAQ 374          
The following BLAST results are available for this feature:
BLAST of CX295090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
OTSA_ECOL51.345e-1626.54Alpha,alpha-trehalose-phosphate synthase [UDP-form... [more]
OTSA_ECOUT1.757e-1626.54Alpha,alpha-trehalose-phosphate synthase [UDP-form... [more]
OTSA_ECOK11.757e-1626.54Alpha,alpha-trehalose-phosphate synthase [UDP-form... [more]
TPS1_CAEEL2.997e-1628.70Alpha,alpha-trehalose-phosphate synthase [UDP-form... [more]
OTSA_ENTS82.997e-1626.79Alpha,alpha-trehalose-phosphate synthase [UDP-form... [more]
GGPS_SYNP22.997e-1625.66Glucosylglycerol-phosphate synthase OS=Synechococc... [more]
OTSA_SALTY1.139e-1526.54Alpha,alpha-trehalose-phosphate synthase [UDP-form... [more]
OTSA_SALTI1.139e-1526.54Alpha,alpha-trehalose-phosphate synthase [UDP-form... [more]
OTSA_SALPB1.139e-1526.54Alpha,alpha-trehalose-phosphate synthase [UDP-form... [more]
OTSA_SALPA1.139e-1526.54Alpha,alpha-trehalose-phosphate synthase [UDP-form... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05068E02SK DroRLeaf1 Citrus clementina cDNA clone C05068E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295090 ID=CX295090; Name=CX295090; organism=Citrus clementina; type=EST; length=699bp
ATTCTGCGGGCCCTGTTGAATTCTGATTTAATTGGGTTCCATACTTTTGA
TTATGCACGGCATTTCTTGTCCTGCTGTAGTCGAATGCTAGGTCTTACCT
ATGAATCGAAGAGAGGTTACATAGGCCTTGAGTATTATGGTAGGACTGTT
AGTATCAAGATTCTTCCGGTGGGTATTCACATGGGTCAGCTTCAGTCAGT
TTTGAGTCTCCCTGGAACGGAGGCAAAGGTTTCTGAGCTCATTAAGCAGT
TCCATGATCAGGGTAAGGTGATGTTGCTTGGGGTAGATGATATGGACATA
TTTAAGGGCATAAGTTTGAAGCTGTTGGCCATGGAACAGTTACTCATTCA
ACACCCAGAGTGGCAGGGGAAGGTTGTACTGGTGCAGATAGCAAATCCTG
CTAGGGGCCGGGGAAAAGACGTGAAAGAAGTGCAGGCTGAGACATACTCG
ACTGTGGAGCGGATCAATCAAACTTTTGGGAAACCTGGATATGATCCCGT
TGTCTTGATTGATGAGCCACTTAAGTTTTATGAGAGAATTGCATATTATG
TGGTTGCAGAGTGTTGTTTGGTCACTGCAGTTAGAGATGGTATGAATCTC
ATACCATATGAATACATAATCAGCCGCCAAGGAAATGAGAAATTGGACAA
GGTTTTAGGTTCGGAGCCATCATCCCCAAAGAAGAGCATGTTGGTTGTT
back to top