CX295095

Overview
NameCX295095
Unique NameCX295095
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295095_ssr605 microsatellite CX295095_ssr605:605..616. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6017 contig Ccv1_Contig6017:221..932. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_GEOKA (60 kDa chaperonin OS=Geobacillus kaustophilus GN=groL PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.142e-53
Identity = 109/204 (53.43%), Postives = 147/204 (72.06%), Query Frame = 2
Query:   80 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            AK I F + +R AM  G+DKL+DAV +TLGP+GRNVVL++ FGSP + NDGVTIA+ IEL DP EN GA L+ EVASKTND AGDGTTTA+VLA+ +I+ GL +V +GANP+ ++RGI+K V   VEEL+  ++PI+G++ I  VA ISA  D+ +G +IA+A+++VG DGV+                GM+ DRGY+SP  +T
Sbjct:    2 AKQIKFSEEARRAMLRGVDKLADAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVAEVASKTNDIAGDGTTTATVLAQAMIREGLKNVAAGANPMGIRRGIEKAVAVAVEELKAISKPIKGKESIAQVAAISAA-DEEVGQLIAEAMERVGNDGVITLEESKGFTTELDVVEGMQFDRGYVSPYMIT 204          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_CHLPB (60 kDa chaperonin OS=Chlorobium phaeobacteroides (strain BS1) GN=groL PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.142e-53
Identity = 109/205 (53.17%), Postives = 142/205 (69.27%), Query Frame = 2
Query:   77 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            SAKDI FD  +RA ++ G+DKL+DAV +TLGP GRNV++D+ FG+P    DGVT+A+ IEL D  EN GA ++REV+SKT+D AGDGTTTA+VLA+ I + GL +V +GA P+ LKRGIDK V  ++ EL   +  I G+ +I  V TISA ND  IG +IADA++KVG DGV+                GM+ DRGY+SP FVT
Sbjct:    2 SAKDILFDASARAKLKVGVDKLADAVKVTLGPAGRNVLIDKKFGAPTSTKDGVTVAKEIELEDSFENMGAQMVREVSSKTSDVAGDGTTTATVLAQAIYREGLKNVAAGARPIDLKRGIDKAVKEVIGELRTISNDISGKIEIAQVGTISANNDPEIGQLIADAMEKVGKDGVITVEEAKGMDTELKVVEGMQFDRGYLSPYFVT 206          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_CAMC5 (60 kDa chaperonin OS=Campylobacter curvus (strain 525.92) GN=groL PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.142e-53
Identity = 103/204 (50.49%), Postives = 145/204 (71.08%), Query Frame = 2
Query:   80 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            AK+I +   +R  +  G+ KL+DAV +T+GPRGRNV++ + FG+P +  DGV++A+ +EL D +EN GA+L+REVASKTND AGDGTTTA+VLA  I K GL +VT+GANP+ +KRG+DK V  L++EL+  A+ + G  +I  +ATISA +D+ IG +IADA++KVG DGV+                GM+ DRGY+SP F+T
Sbjct:    2 AKEIFYSDDARNRLYEGVRKLNDAVKVTMGPRGRNVLIQKSFGAPSITKDGVSVAKEVELKDTIENMGASLVREVASKTNDQAGDGTTTATVLAHAIFKEGLRNVTAGANPIEVKRGMDKEVAALIDELKNIAKKVSGSKEIAQIATISANSDESIGKLIADAMEKVGKDGVITVEEAKSIEDELNVVEGMQFDRGYLSPYFIT 205          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_THESQ (60 kDa chaperonin OS=Thermotoga sp. (strain RQ2) GN=groL PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.104e-53
Identity = 110/203 (54.19%), Postives = 148/203 (72.91%), Query Frame = 2
Query:   83 KDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            K + F++ +R A++ G+DK+++AV +TLGP+GRNVV+++ +GSP + NDGV+IA+ IEL D  EN GA L++EVASKTND AGDGTTTA+VLA+ +IK GL +V +GANP+ LKRGIDK V   VEE++K ++ + GR+DI  VA ISA N   IG +IA+A+DKVG DGV+                GM+ DRGYISP FVT
Sbjct:    3 KILKFNEEARRALERGVDKVANAVKVTLGPKGRNVVIEKSWGSPTITNDGVSIAKEIELEDKFENLGAQLVKEVASKTNDVAGDGTTTATVLAQAMIKEGLKNVAAGANPILLKRGIDKAVEKAVEEIKKVSKKLSGREDIAHVAAISA-NSAEIGELIAEAMDKVGEDGVITVEDSKTLETYVEFTEGMQFDRGYISPYFVT 204          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_THEP1 (60 kDa chaperonin OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=groL PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.104e-53
Identity = 110/203 (54.19%), Postives = 148/203 (72.91%), Query Frame = 2
Query:   83 KDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            K + F++ +R A++ G+DK+++AV +TLGP+GRNVV+++ +GSP + NDGV+IA+ IEL D  EN GA L++EVASKTND AGDGTTTA+VLA+ +IK GL +V +GANP+ LKRGIDK V   VEE++K ++ + GR+DI  VA ISA N   IG +IA+A+DKVG DGV+                GM+ DRGYISP FVT
Sbjct:    3 KILKFNEEARRALERGVDKVANAVKVTLGPKGRNVVIEKSWGSPTITNDGVSIAKEIELEDKFENLGAQLVKEVASKTNDVAGDGTTTATVLAQAMIKEGLKNVAAGANPILLKRGIDKAVEKAVEEIKKVSKKLSGREDIAHVAAISA-NSAEIGELIAEAMDKVGEDGVITVEDSKTLETYVEFTEGMQFDRGYISPYFVT 204          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_THEMA (60 kDa chaperonin OS=Thermotoga maritima GN=groL PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.104e-53
Identity = 110/203 (54.19%), Postives = 148/203 (72.91%), Query Frame = 2
Query:   83 KDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            K + F++ +R A++ G+DK+++AV +TLGP+GRNVV+++ +GSP + NDGV+IA+ IEL D  EN GA L++EVASKTND AGDGTTTA+VLA+ +IK GL +V +GANP+ LKRGIDK V   VEE++K ++ + GR+DI  VA ISA N   IG +IA+A+DKVG DGV+                GM+ DRGYISP FVT
Sbjct:    3 KILKFNEEARRALERGVDKVANAVKVTLGPKGRNVVIEKSWGSPTITNDGVSIAKEIELEDKFENLGAQLVKEVASKTNDVAGDGTTTATVLAQAMIKEGLKNVAAGANPILLKRGIDKAVEKAVEEIKKVSKKLSGREDIAHVAAISA-NSAEIGELIAEAMDKVGEDGVITVEDSKTLETYVEFTEGMQFDRGYISPYFVT 204          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_GRAFK (60 kDa chaperonin OS=Gramella forsetii (strain KT0803) GN=groL PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.104e-53
Identity = 107/205 (52.20%), Postives = 145/205 (70.73%), Query Frame = 2
Query:   80 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPI-EGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            AKDI FD  +R  ++ G+D L++AV +TLGP+GRNV++ + FG+P V  DGVT+A+ IEL DP+EN GA +++EVASKTND AGDGTTTA+VLA+ I++ GL +V +GANP+ LKRGIDK V  L  +L K+ + + +  + IK VA+ISA NDD+IG +IA A  KVG +GV+                GM+ DRGY+SP FVT
Sbjct:    2 AKDIKFDIQARNGIKRGVDALANAVKVTLGPKGRNVIISKSFGAPTVTKDGVTVAKEIELEDPLENMGAQMVKEVASKTNDLAGDGTTTATVLAQAIVQEGLKNVAAGANPMDLKRGIDKAVEALTADLAKQTKEVGDSSEKIKQVASISANNDDMIGDLIAQAFGKVGKEGVITVEEAKGTETHVDVVEGMQFDRGYLSPYFVT 206          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_DESRM (60 kDa chaperonin OS=Desulfotomaculum reducens (strain MI-1) GN=groL PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.104e-53
Identity = 107/204 (52.45%), Postives = 148/204 (72.55%), Query Frame = 2
Query:   80 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            AK+I F + +R A++ G++ L++AV +TLGP+GRNVV+++ FG+P + NDGVTIAR IEL D  EN GA L++EVA+KTND AGDGTTTA+VLA+ +++ GL +V +GANP+ +KRGI+K V   VEE++  A+PIE ++ I  VAT+SA NDD IG +IA+A++KVG DGV+                GM  DRGYISP  +T
Sbjct:    2 AKEIIFREDARRALERGVNALAEAVKVTLGPKGRNVVIEKKFGAPTITNDGVTIAREIELEDNFENMGAQLVKEVATKTNDVAGDGTTTATVLAQALVREGLKNVAAGANPMIIKRGIEKAVEKAVEEIKAMAKPIESKEAIAQVATVSA-NDDSIGNLIAEAMEKVGKDGVITVEESQGIGTNLEVVEGMNFDRGYISPYMIT 204          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_CLOBB (60 kDa chaperonin OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=groL PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.104e-53
Identity = 109/204 (53.43%), Postives = 147/204 (72.06%), Query Frame = 2
Query:   80 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            AK + F + +R +MQ G+DKL+D V +TLGP+GRNVVLD+ FGSP + NDGV+IAR IEL DP EN GA L++EVA+KTND AGDGTTTA++LA+ II+ GL +VT+GANP+ ++ GI   V   VEE++K ++P+EG++DI  VA ISA  D+ IG +IADA++KVG +GV+                GM+ DRGY+SP   T
Sbjct:    2 AKMLKFGEDARRSMQVGVDKLADTVKVTLGPKGRNVVLDKKFGSPLITNDGVSIAREIELEDPYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVTAGANPMLIRNGIRMAVDKAVEEIKKISKPVEGKEDIARVAAISAA-DEEIGKLIADAMEKVGNEGVITIEESKSMGTELDVVEGMQFDRGYVSPYMST 204          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_CLOBA (60 kDa chaperonin OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=groL PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.104e-53
Identity = 109/204 (53.43%), Postives = 147/204 (72.06%), Query Frame = 2
Query:   80 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            AK + F + +R +MQ G+DKL+D V +TLGP+GRNVVLD+ FGSP + NDGV+IAR IEL DP EN GA L++EVA+KTND AGDGTTTA++LA+ II+ GL +VT+GANP+ ++ GI   V   VEE++K ++P+EG++DI  VA ISA  D+ IG +IADA++KVG +GV+                GM+ DRGY+SP   T
Sbjct:    2 AKMLKFGEDARRSMQVGVDKLADTVKVTLGPKGRNVVLDKKFGSPLITNDGVSIAREIELEDPYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVTAGANPMLIRNGIRMAVDKAVEEIKKISKPVEGKEDIARVAAISAA-DEEIGKLIADAMEKVGNEGVITIEESKSMGTELDVVEGMQFDRGYVSPYMST 204          
The following BLAST results are available for this feature:
BLAST of CX295095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_GEOKA3.142e-5353.4360 kDa chaperonin OS=Geobacillus kaustophilus GN=g... [more]
CH60_CHLPB3.142e-5353.1760 kDa chaperonin OS=Chlorobium phaeobacteroides (... [more]
CH60_CAMC53.142e-5350.4960 kDa chaperonin OS=Campylobacter curvus (strain ... [more]
CH60_THESQ4.104e-5354.1960 kDa chaperonin OS=Thermotoga sp. (strain RQ2) G... [more]
CH60_THEP14.104e-5354.1960 kDa chaperonin OS=Thermotoga petrophila (strain... [more]
CH60_THEMA4.104e-5354.1960 kDa chaperonin OS=Thermotoga maritima GN=groL P... [more]
CH60_GRAFK4.104e-5352.2060 kDa chaperonin OS=Gramella forsetii (strain KT0... [more]
CH60_DESRM4.104e-5352.4560 kDa chaperonin OS=Desulfotomaculum reducens (st... [more]
CH60_CLOBB4.104e-5353.4360 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH60_CLOBA4.104e-5353.4360 kDa chaperonin OS=Clostridium botulinum (strain... [more]

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Properties
Property NameValue
Genbank descriptionC05068E08SK DroRLeaf1 Citrus clementina cDNA clone C05068E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295095 ID=CX295095; Name=CX295095; organism=Citrus clementina; type=EST; length=711bp
GAGGGGGGAGCTTGAGGAGGAGAGGAATCAGAATCAGGGTCAGAGAGTAA
ATTACAGGAGATTCGCTGTTAGAGCGTCTGCCAAAGATATTGCTTTTGAC
CAGATCTCCAGGGCCGCAATGCAGGCCGGCATCGATAAGCTTTCCGATGC
TGTTGGCCTTACTCTGGGTCCAAGAGGGAGAAATGTTGTTCTGGATGAAT
TTGGAAGTCCGAAAGTGGTTAATGATGGAGTAACAATAGCCCGAGCTATT
GAGCTCGCAGATCCCATGGAAAATGCTGGTGCTGCTCTTATTAGGGAGGT
TGCAAGCAAAACCAATGACTCTGCTGGTGATGGAACAACAACTGCATCAG
TTCTTGCACGAGAAATAATTAAACTAGGACTCCTGAGTGTCACGTCTGGT
GCAAATCCTGTCTCCTTGAAGAGAGGGATTGATAAAACTGTACATGGGTT
GGTAGAAGAGTTGGAGAAGAGGGCCAGGCCTATCGAAGGTCGTGATGATA
TCAAAGCTGTTGCTACCATCTCTGCTGGGAATGATGACCTGATTGGGACA
ATGATCGCCGATGCAATTGACAAGGTTGGTCCTGATGGCGTCTTGTCAAT
CGAGTCATCATCATCATTTGAGACTACTGTTGAAGTTGAGGAAGGAATGG
AGATTGACAGGGGTTACATCTCTCCTCAGTTTGTCACAACCCTGAGAAAT
TATTGTTGAAT
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