CX295095

Overview
NameCX295095
Unique NameCX295095
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295095_ssr605 microsatellite CX295095_ssr605:605..616. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6017 contig Ccv1_Contig6017:221..932. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_CAMFF (60 kDa chaperonin OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=groL PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.104e-53
Identity = 103/204 (50.49%), Postives = 144/204 (70.59%), Query Frame = 2
Query:   80 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            AK+I F   +R  + +G+ KL+DAV +T+GPRGRNV++ + FG+P +  DGV++A+ IEL D +EN GA L+REVASKTND AGDGTTTA+VLA  I K GL ++T+GANP+ +KRG+DK V  +  EL+  A+ ++G+ +I  VATISA +D  IG +IA+A++KVG DGV+                GM+ DRGY+SP F+T
Sbjct:    2 AKEIIFADDARNRLYSGVKKLNDAVKVTMGPRGRNVLIQKSFGAPSITKDGVSVAKEIELKDTIENMGAGLVREVASKTNDEAGDGTTTATVLAHAIFKEGLRNITAGANPIEVKRGMDKFVEAVTSELKSAAKKVDGKKEIAQVATISANSDSSIGDLIAEAMEKVGKDGVITVEEAKSINDELNVVEGMQFDRGYLSPYFIT 205          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_CYTH3 (60 kDa chaperonin OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=groL PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.360e-53
Identity = 107/204 (52.45%), Postives = 142/204 (69.61%), Query Frame = 2
Query:   80 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            AK I FD+ +R  ++ G+D L+DAV +TLGP+GRNV+LD+ FGSP +  DGV++A+ IEL D +EN GA L++EVASKT D AGDGTTTA+VL + I   GL +V +GANP+ LKRGIDK V  ++ +L+ +++ I   ++I  VATISA ND  IG MIA A+DKVG DGV+                GM+ DRGY+SP FVT
Sbjct:    2 AKQILFDRDAREKLKKGVDALADAVKVTLGPKGRNVILDKKFGSPAITKDGVSVAKDIELKDAIENMGAQLVKEVASKTADQAGDGTTTATVLTQAIFNAGLKNVAAGANPMDLKRGIDKAVSAIIADLKVQSKKISNSNEIAQVATISANNDHEIGKMIAHAMDKVGKDGVITVEEAKGTETEVKTVEGMQFDRGYLSPYFVT 205          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_AKKM8 (60 kDa chaperonin OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=groL PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.360e-53
Identity = 106/204 (51.96%), Postives = 143/204 (70.10%), Query Frame = 2
Query:   80 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            AK I FD+ +R A+  G+++++ AV  TLGP GRNVV+D+ FGSP +  DGVT+A+ IEL DP EN GA L+REV+SKTND AGDGTTTA+VLA  I + GL +VT+GANP+SL+RGI K    +VEEL+K ++P++   ++  VAT+SA  D  IG +IA+A+DKVG DG +                GM+ D+GY+SP FVT
Sbjct:    2 AKQIQFDETARQALLRGVEQIAKAVKSTLGPAGRNVVIDKKFGSPLITKDGVTVAKEIELEDPFENMGAQLVREVSSKTNDVAGDGTTTATVLAESIYREGLRNVTAGANPISLQRGIMKAADSVVEELKKISKPVDSSKEVAQVATVSANWDAEIGNIIAEAMDKVGKDGTITVEEAKGIETTLDVVEGMQFDKGYLSPYFVT 205          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_PELLD (60 kDa chaperonin OS=Pelodictyon luteolum (strain DSM 273) GN=groL PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.001e-53
Identity = 108/205 (52.68%), Postives = 143/205 (69.76%), Query Frame = 2
Query:   77 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            +AKDI FD  +RA ++ G+DKL++ V +TLGP GRNV++D+ FG+P    DGVT+A+ IEL D +EN GA ++REVASKT+D AGDGTTTA+VLA+ I + GL +V +GA P+ LKRGID+ V  +V EL   +R I G+ +I  V TISA ND  IG +IA+A+DKVG DGV+                GM+ DRGY+SP FVT
Sbjct:    2 TAKDILFDADARAKLKVGVDKLANTVKVTLGPAGRNVLIDKKFGAPTSTKDGVTVAKEIELDDAIENMGAQMVREVASKTSDVAGDGTTTATVLAQAIYREGLKNVAAGARPIDLKRGIDRAVKEVVAELRNISRSISGKKEIAQVGTISANNDPEIGELIAEAMDKVGKDGVITVEEAKGMETELKVVEGMQFDRGYLSPYFVT 206          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH602_PROM9 (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain MIT 9312) GN=groL2 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.001e-53
Identity = 104/204 (50.98%), Postives = 147/204 (72.06%), Query Frame = 2
Query:   80 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            AK I +++ +R A++ GID L+++V +TLGP+GRNVVL++ FG+P+++NDGVTIA+ IEL D +EN G ALIR+ ASKTND+AGDGTTTA+VLA  ++K GL +V +GAN ++LK+GIDK    LV ++++ ++PI   + I    TI+AGNDD +G MIA+A+DKVG +GV+                GM  D+GYISP F T
Sbjct:    2 AKRIIYNEQARRALERGIDILAESVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKAGLRNVAAGANAITLKKGIDKATEFLVGKIQENSKPISDSNAIAQCGTIAAGNDDEVGQMIANAMDKVGKEGVISLEEGKSMTTELEVTEGMRFDKGYISPYFAT 205          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH602_PROM0 (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain MIT 9301) GN=groL2 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.001e-53
Identity = 104/204 (50.98%), Postives = 147/204 (72.06%), Query Frame = 2
Query:   80 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            AK I +++ +R A++ GID L+++V +TLGP+GRNVVL++ FG+P+++NDGVTIA+ IEL D +EN G ALIR+ ASKTND+AGDGTTTA+VLA  ++K GL +V +GAN ++LK+GIDK    LV ++++ ++PI   + I    TI+AGNDD +G MIA+A+DKVG +GV+                GM  D+GYISP F T
Sbjct:    2 AKRIIYNEQARRALERGIDILAESVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKAGLRNVAAGANAITLKKGIDKATEFLVGKIQENSKPISDSNAIAQCGTIAAGNDDEVGQMIANAMDKVGKEGVISLEEGKSMTTELEVTEGMRFDKGYISPYFAT 205          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH602_ACAM1 (60 kDa chaperonin 2 OS=Acaryochloris marina (strain MBIC 11017) GN=groL2 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.001e-53
Identity = 107/204 (52.45%), Postives = 146/204 (71.57%), Query Frame = 2
Query:   80 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            AK I +++ +R A++ G+D L ++V +TLGP+GRNVVL++ FG+P++VNDGVTIA+ IEL D +EN G ALIR+ ASKTND+AGDGTTTA+VLA  ++K G+ +V +GAN +SLKRGI+K    LVE++ + AR +E    I  V TISAGNDD +G MIA+A+DKVG +GV+                GM  ++GYISP F T
Sbjct:    2 AKRIIYNENARRALEKGMDILCESVAVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDNIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKEGMRNVVAGANAISLKRGIEKAAGFLVEKIAENARSVEDSTAIAQVGTISAGNDDEVGQMIANAMDKVGKEGVISLEEGKSMTTELEVTEGMRFEKGYISPYFAT 205          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_OCEIH (60 kDa chaperonin OS=Oceanobacillus iheyensis GN=groL PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 9.143e-53
Identity = 109/204 (53.43%), Postives = 146/204 (71.57%), Query Frame = 2
Query:   80 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            AKD+ F + +R AM  G+D L+DAV +TLGP+GRNVVLD+ FGSP + NDGVTIA+ IEL D  EN GA L+ EVASKTND AGDGTTTA+VLA+ +I+ GL +VTSGANPV ++RGI+K V   V+EL+  ++PIE ++ I  +A +S+G D+ +G +IA+A+++VG DGV+                GM+ DRGY SP  VT
Sbjct:    2 AKDLKFSEDARRAMLRGVDTLADAVKVTLGPKGRNVVLDKKFGSPLITNDGVTIAKEIELEDAFENMGAQLVSEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTSGANPVGIRRGIEKAVELAVQELKGISQPIESKEAISQIAAVSSG-DEEVGQLIAEAMERVGNDGVITIEESKGFNTELEVVEGMQFDRGYASPYMVT 204          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_CAMJR (60 kDa chaperonin OS=Campylobacter jejuni (strain RM1221) GN=groL PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 9.143e-53
Identity = 102/204 (50.00%), Postives = 144/204 (70.59%), Query Frame = 2
Query:   80 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            AK+I F   +R  +  G+ KL+DAV +T+GPRGRNV++ + FG+P +  DGV++A+ +EL D +EN GA+L+REVASKT D AGDGTTTA+VLA  I K GL ++T+GANP+ +KRG+DK    +V EL+K +R ++ + +I  VATISA +D+ IG +IADA++KVG DGV+                GM+ DRGY+SP F+T
Sbjct:    2 AKEIIFSDEARNKLYEGVKKLNDAVKVTMGPRGRNVLIQKSFGAPSITKDGVSVAKEVELKDSLENMGASLVREVASKTADQAGDGTTTATVLAHAIFKEGLRNITAGANPIEVKRGMDKACEAIVAELKKLSREVKDKKEIAQVATISANSDEKIGNLIADAMEKVGKDGVITVEEAKSINDELNVVEGMQFDRGYLSPYFIT 205          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_CAMJJ (60 kDa chaperonin OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=groL PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 9.143e-53
Identity = 102/204 (50.00%), Postives = 144/204 (70.59%), Query Frame = 2
Query:   80 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            AK+I F   +R  +  G+ KL+DAV +T+GPRGRNV++ + FG+P +  DGV++A+ +EL D +EN GA+L+REVASKT D AGDGTTTA+VLA  I K GL ++T+GANP+ +KRG+DK    +V EL+K +R ++ + +I  VATISA +D+ IG +IADA++KVG DGV+                GM+ DRGY+SP F+T
Sbjct:    2 AKEIIFSDEARNKLYEGVKKLNDAVKVTMGPRGRNVLIQKSFGAPSITKDGVSVAKEVELKDSLENMGASLVREVASKTADQAGDGTTTATVLAHAIFKEGLRNITAGANPIEVKRGMDKACEAIVAELKKLSREVKDKKEIAQVATISANSDEKIGNLIADAMEKVGKDGVITVEEAKSINDELNVVEGMQFDRGYLSPYFIT 205          
The following BLAST results are available for this feature:
BLAST of CX295095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_CAMFF4.104e-5350.4960 kDa chaperonin OS=Campylobacter fetus subsp. fe... [more]
CH60_CYTH35.360e-5352.4560 kDa chaperonin OS=Cytophaga hutchinsonii (strai... [more]
CH60_AKKM85.360e-5351.9660 kDa chaperonin OS=Akkermansia muciniphila (stra... [more]
CH60_PELLD7.001e-5352.6860 kDa chaperonin OS=Pelodictyon luteolum (strain ... [more]
CH602_PROM97.001e-5350.9860 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH602_PROM07.001e-5350.9860 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH602_ACAM17.001e-5352.4560 kDa chaperonin 2 OS=Acaryochloris marina (strai... [more]
CH60_OCEIH9.143e-5353.4360 kDa chaperonin OS=Oceanobacillus iheyensis GN=g... [more]
CH60_CAMJR9.143e-5350.0060 kDa chaperonin OS=Campylobacter jejuni (strain ... [more]
CH60_CAMJJ9.143e-5350.0060 kDa chaperonin OS=Campylobacter jejuni subsp. j... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05068E08SK DroRLeaf1 Citrus clementina cDNA clone C05068E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295095 ID=CX295095; Name=CX295095; organism=Citrus clementina; type=EST; length=711bp
GAGGGGGGAGCTTGAGGAGGAGAGGAATCAGAATCAGGGTCAGAGAGTAA
ATTACAGGAGATTCGCTGTTAGAGCGTCTGCCAAAGATATTGCTTTTGAC
CAGATCTCCAGGGCCGCAATGCAGGCCGGCATCGATAAGCTTTCCGATGC
TGTTGGCCTTACTCTGGGTCCAAGAGGGAGAAATGTTGTTCTGGATGAAT
TTGGAAGTCCGAAAGTGGTTAATGATGGAGTAACAATAGCCCGAGCTATT
GAGCTCGCAGATCCCATGGAAAATGCTGGTGCTGCTCTTATTAGGGAGGT
TGCAAGCAAAACCAATGACTCTGCTGGTGATGGAACAACAACTGCATCAG
TTCTTGCACGAGAAATAATTAAACTAGGACTCCTGAGTGTCACGTCTGGT
GCAAATCCTGTCTCCTTGAAGAGAGGGATTGATAAAACTGTACATGGGTT
GGTAGAAGAGTTGGAGAAGAGGGCCAGGCCTATCGAAGGTCGTGATGATA
TCAAAGCTGTTGCTACCATCTCTGCTGGGAATGATGACCTGATTGGGACA
ATGATCGCCGATGCAATTGACAAGGTTGGTCCTGATGGCGTCTTGTCAAT
CGAGTCATCATCATCATTTGAGACTACTGTTGAAGTTGAGGAAGGAATGG
AGATTGACAGGGGTTACATCTCTCCTCAGTTTGTCACAACCCTGAGAAAT
TATTGTTGAAT
back to top