CX295095

Overview
NameCX295095
Unique NameCX295095
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295095_ssr605 microsatellite CX295095_ssr605:605..616. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6017 contig Ccv1_Contig6017:221..932. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_CLONN (60 kDa chaperonin OS=Clostridium novyi (strain NT) GN=groL PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.560e-52
Identity = 109/204 (53.43%), Postives = 148/204 (72.55%), Query Frame = 2
Query:   80 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            AK I F + SR AMQAG+DKL++AV +TLGP+GRNVVLD+ FG+P + NDGVTIA+ IEL D  EN GA L++EVA+KTND AGDGTTTA++LA+ II+ GL +VT+GANP+ +++GI   V   VE+++K ++ ++G++DI  VA ISA  D  IG +IADA++KVG +GV+                GM+ DRGY+SP  VT
Sbjct:    2 AKSILFGEESRRAMQAGVDKLANAVKVTLGPKGRNVVLDKKFGAPLITNDGVTIAKEIELEDMYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVTAGANPMLIRKGIKLAVDTAVEQIKKSSKQVDGKEDIARVAAISAA-DPEIGKLIADAMEKVGNEGVITVEESNTMATELEVVEGMQFDRGYLSPYMVT 204          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_CAMLR (60 kDa chaperonin OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=groL PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.560e-52
Identity = 102/204 (50.00%), Postives = 144/204 (70.59%), Query Frame = 2
Query:   80 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            AK+I F   +R  +  G+ KL+DAV +T+GPRGRNV++ + FG+P +  DGV++A+ +EL D +EN GA+L+REVASKT D AGDGTTTA+VLA  I K GL ++T+GANP+ +KRG+DK    +V EL+K +R ++ + +I  VATISA +D+ IG +IADA++KVG DGV+                GM+ DRGY+SP F+T
Sbjct:    2 AKEIFFSDEARNKLYEGVKKLNDAVKVTMGPRGRNVLIQKSFGAPTITKDGVSVAKEVELKDSLENMGASLVREVASKTADQAGDGTTTATVLAHAIFKEGLRNITAGANPIEVKRGMDKACEAIVAELKKLSREVKDKKEIAQVATISANSDEKIGNLIADAMEKVGKDGVITVEEAKSINDELNVVEGMQFDRGYLSPYFIT 205          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH602_PROMP (60 kDa chaperonin 2 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=groL2 PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.560e-52
Identity = 104/204 (50.98%), Postives = 146/204 (71.57%), Query Frame = 2
Query:   80 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            AK I +++ +R A++ GID L+++V +TLGP+GRNVVL++ FG+P+++NDGVTIA+ IEL D +EN G ALIR+ ASKTND+AGDGTTTA+VLA  ++K GL +V +GAN ++LK+GIDK    LV ++E+ ++PI     I    TI+AGND+ +G MIA+A+DKVG +GV+                GM  D+GYISP F T
Sbjct:    2 AKRIIYNEQARRALERGIDILAESVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKAGLRNVAAGANAITLKKGIDKATEFLVGKIEENSKPISDSTAIAQCGTIAAGNDEEVGEMIANAMDKVGKEGVISLEEGKSMTTELEVTEGMRFDKGYISPYFAT 205          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH602_PROM5 (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain MIT 9515) GN=groL2 PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.560e-52
Identity = 104/204 (50.98%), Postives = 146/204 (71.57%), Query Frame = 2
Query:   80 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            AK I +++ +R A++ GID L+++V +TLGP+GRNVVL++ FG+P+++NDGVTIA+ IEL D +EN G ALIR+ ASKTND+AGDGTTTA+VLA  ++K GL +V +GAN ++LK+GIDK    LV ++E+ ++PI     I    TI+AGND+ +G MIA+A+DKVG +GV+                GM  D+GYISP F T
Sbjct:    2 AKRIIYNEQARRALERGIDILAESVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKAGLRNVAAGANAITLKKGIDKATEFLVGKIEENSKPISDSTAIAQCGTIAAGNDEEVGEMIANAMDKVGKEGVISLEEGKSMTTELEVTEGMRFDKGYISPYFAT 205          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_SYNWW (60 kDa chaperonin OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=groL PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.037e-52
Identity = 107/204 (52.45%), Postives = 146/204 (71.57%), Query Frame = 2
Query:   80 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLD-EFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            +K+I F + +R A++ G+D L++AV +TLGP+GRNVVLD +FGSP + NDGVTIAR I+L DP EN G  L++EVA KTND AGDGTTTA++LA+ +IK GL +V +GANP+ ++RGID+ V  +V+E++  ++P+E RD I  VA ISA +D  IG +IADA++KVG DGV+                GM  DRGYISP  +T
Sbjct:    3 SKEIKFGEEARRALERGVDTLANAVKVTLGPKGRNVVLDRKFGSPTITNDGVTIARDIDLKDPWENLGCQLVKEVAIKTNDVAGDGTTTATLLAQAMIKEGLKNVAAGANPMIMRRGIDQAVKAVVDEIKTLSKPVESRDSIAQVAAISA-DDPEIGQLIADAMEKVGRDGVITVEESQSVGTSLEVVEGMNFDRGYISPYMIT 205          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_SOLUE (60 kDa chaperonin OS=Solibacter usitatus (strain Ellin6076) GN=groL PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.037e-52
Identity = 106/204 (51.96%), Postives = 145/204 (71.08%), Query Frame = 2
Query:   80 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            AK I + + SR A+  G+++L+DAV +TLGP+GRNVVL++ FG P +  DGVT+A+ IEL DP+EN GA ++REVASKT+D AGDGTTTA++LA+ I + G+ +V +GANP++LKRGIDK V    EE++K ++P+ G D I  V TISA +D  IG +IADA+ KVG DGV+                GM+ DRGY+SP FV+
Sbjct:    2 AKQIVYSEASRQAILRGVNQLADAVKVTLGPKGRNVVLEKKFGGPTITKDGVTVAKEIELKDPLENMGAQMVREVASKTSDVAGDGTTTATILAQSIYREGVKAVAAGANPMALKRGIDKAVELATEEVKKLSKPVSG-DMIAQVGTISANSDKTIGNIIADAMKKVGKDGVITVEESKTMVTELDTVEGMQFDRGYLSPYFVS 204          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_NITSB (60 kDa chaperonin OS=Nitratiruptor sp. (strain SB155-2) GN=groL PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.037e-52
Identity = 104/205 (50.73%), Postives = 144/205 (70.24%), Query Frame = 2
Query:   77 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            +AK+I F  I+R  +  G+ KL+DAV +T+GPRGRNV++ + FGSP +  DGV++A+ IEL + +EN GA L++EVASKT D AGDGTTTA+VLA  I K GL ++T+GANP+ +KRG+DK    +V EL+K A+ ++ + +I  VATISA ND  IG +IA+A++KVG DGV+                GM+ DRGY+SP FVT
Sbjct:    2 AAKEIHFSDIARGELFEGVKKLADAVKVTMGPRGRNVLIQKSFGSPSITKDGVSVAKEIELPNTVENMGAQLVKEVASKTADEAGDGTTTATVLAYNIFKEGLRNITAGANPIEVKRGMDKAAEAIVAELKKIAKEVKDKKEIAQVATISANNDPKIGELIAEAMEKVGKDGVITVEEGKSLQDELEVVEGMQFDRGYLSPYFVT 206          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_FLAPJ (60 kDa chaperonin OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=groL PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.037e-52
Identity = 106/205 (51.71%), Postives = 146/205 (71.22%), Query Frame = 2
Query:   80 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPI-EGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            AK+I FD  +R  ++ G+D L++AV +TLGP+GRNV++ + FG P V  DGVT+A+ IEL DP+EN GA +++EVASKTND AGDGTTTA+VLA+ I+K GL +V +GANP+ LKRGIDK V  +V +L K+A+ +    + IK +A+ISA ND++IG +IA+A  KVG +GV+                GM+ DRGY+SP FVT
Sbjct:    2 AKNIKFDIEARDGLKRGVDALANAVKVTLGPKGRNVIIGKSFGGPTVTKDGVTVAKEIELQDPLENMGAQMVKEVASKTNDLAGDGTTTATVLAQAIVKEGLKNVAAGANPMDLKRGIDKAVEAIVADLTKQAKVVGSDSEKIKQIASISANNDEVIGELIANAFAKVGKEGVITVEEAKGTDTYVDVVEGMQFDRGYLSPYFVT 206          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_DICT6 (60 kDa chaperonin OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=groL PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.037e-52
Identity = 105/205 (51.22%), Postives = 145/205 (70.73%), Query Frame = 2
Query:   77 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            +AK ++ D  +R A+  G+D ++D V +TLGP+GRNVVL++ FG+P + NDGVTIA+ I+L DP EN GA L++EVASKTND AGDGTTTA+VLA+ ++  G+  V +GANP+ ++RGI+K V  +VEEL+K A+P+E + DI  VA ISA ND  IG +IA+A+DKVG DGV+                GM+ DRGY+S   +T
Sbjct:    2 AAKLVSLDMQARTALIRGLDIVADTVKITLGPKGRNVVLEKKFGAPVITNDGVTIAKEIDLEDPFENMGAQLVKEVASKTNDVAGDGTTTATVLAQALVHEGMKHVVAGANPMYVRRGIEKAVEKVVEELKKIAKPVETKQDIAHVAAISANNDTEIGNLIAEAMDKVGKDGVITVEESQGITTTLELVEGMQFDRGYLSAYMIT 206          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_CLOTH (60 kDa chaperonin OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=groL PE=1 SV=3)

HSP 1 Score: 205.682 bits (522), Expect = 2.037e-52
Identity = 107/204 (52.45%), Postives = 149/204 (73.04%), Query Frame = 2
Query:   80 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            AK I F + +R A++ G+++L+D V +TLGP+GRNVVLD+ FGSP + NDGVTIA+ IEL DP EN GA L++EVA+KTND AGDGTTTA++LA+ II+ GL +V +GANP+ LK+GI K V   VE +++ ++ ++G++DI  VA+ISA ND++IG +IADA++KV  DGV+                GM+ DRGY+SP  VT
Sbjct:    2 AKQIKFGEEARRALERGVNQLADTVKVTLGPKGRNVVLDKKFGSPMITNDGVTIAKEIELEDPFENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVAAGANPMLLKKGIAKAVDAAVEGIKEISQKVKGKEDIARVASISA-NDEVIGELIADAMEKVTNDGVITVEEAKTMGTNLEIVEGMQFDRGYVSPYMVT 204          
The following BLAST results are available for this feature:
BLAST of CX295095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_CLONN1.560e-5253.4360 kDa chaperonin OS=Clostridium novyi (strain NT)... [more]
CH60_CAMLR1.560e-5250.0060 kDa chaperonin OS=Campylobacter lari (strain RM... [more]
CH602_PROMP1.560e-5250.9860 kDa chaperonin 2 OS=Prochlorococcus marinus sub... [more]
CH602_PROM51.560e-5250.9860 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH60_SYNWW2.037e-5252.4560 kDa chaperonin OS=Syntrophomonas wolfei subsp. ... [more]
CH60_SOLUE2.037e-5251.9660 kDa chaperonin OS=Solibacter usitatus (strain E... [more]
CH60_NITSB2.037e-5250.7360 kDa chaperonin OS=Nitratiruptor sp. (strain SB1... [more]
CH60_FLAPJ2.037e-5251.7160 kDa chaperonin OS=Flavobacterium psychrophilum ... [more]
CH60_DICT62.037e-5251.2260 kDa chaperonin OS=Dictyoglomus thermophilum (st... [more]
CH60_CLOTH2.037e-5252.4560 kDa chaperonin OS=Clostridium thermocellum (str... [more]

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Properties
Property NameValue
Genbank descriptionC05068E08SK DroRLeaf1 Citrus clementina cDNA clone C05068E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295095 ID=CX295095; Name=CX295095; organism=Citrus clementina; type=EST; length=711bp
GAGGGGGGAGCTTGAGGAGGAGAGGAATCAGAATCAGGGTCAGAGAGTAA
ATTACAGGAGATTCGCTGTTAGAGCGTCTGCCAAAGATATTGCTTTTGAC
CAGATCTCCAGGGCCGCAATGCAGGCCGGCATCGATAAGCTTTCCGATGC
TGTTGGCCTTACTCTGGGTCCAAGAGGGAGAAATGTTGTTCTGGATGAAT
TTGGAAGTCCGAAAGTGGTTAATGATGGAGTAACAATAGCCCGAGCTATT
GAGCTCGCAGATCCCATGGAAAATGCTGGTGCTGCTCTTATTAGGGAGGT
TGCAAGCAAAACCAATGACTCTGCTGGTGATGGAACAACAACTGCATCAG
TTCTTGCACGAGAAATAATTAAACTAGGACTCCTGAGTGTCACGTCTGGT
GCAAATCCTGTCTCCTTGAAGAGAGGGATTGATAAAACTGTACATGGGTT
GGTAGAAGAGTTGGAGAAGAGGGCCAGGCCTATCGAAGGTCGTGATGATA
TCAAAGCTGTTGCTACCATCTCTGCTGGGAATGATGACCTGATTGGGACA
ATGATCGCCGATGCAATTGACAAGGTTGGTCCTGATGGCGTCTTGTCAAT
CGAGTCATCATCATCATTTGAGACTACTGTTGAAGTTGAGGAAGGAATGG
AGATTGACAGGGGTTACATCTCTCCTCAGTTTGTCACAACCCTGAGAAAT
TATTGTTGAAT
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