CX295095

Overview
NameCX295095
Unique NameCX295095
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295095_ssr605 microsatellite CX295095_ssr605:605..616. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6017 contig Ccv1_Contig6017:221..932. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_LEPBJ (60 kDa chaperonin OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=groL PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.363e-56
Identity = 112/204 (54.90%), Postives = 148/204 (72.55%), Query Frame = 2
Query:   80 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            AKDI +++ +R  +  G++KL++AV +TLGP+GRNVV+D+ FG+P +  DGVT+A+ IEL D +EN GA +++EV++KTND AGDGTTTA++LA+ II  GL +VT+GANP+SLKRGIDK V   VE + KRA  IE + DI  VA+ISA NDD IG +IADA+DKVG DGV+                GM+ DRGYISP  VT
Sbjct:    2 AKDIEYNETARRKLLEGVNKLANAVKVTLGPKGRNVVIDKKFGAPTITKDGVTVAKEIELEDALENMGAQMVKEVSTKTNDVAGDGTTTATILAQSIINEGLKNVTAGANPMSLKRGIDKAVTAAVESIRKRAVKIENKKDIANVASISANNDDTIGNLIADAMDKVGKDGVITVEEAKSIETTLDVVEGMQFDRGYISPYMVT 205          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_CHLT3 (60 kDa chaperonin OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=groL PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.325e-56
Identity = 112/205 (54.63%), Postives = 149/205 (72.68%), Query Frame = 2
Query:   77 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            +AK+I FD   R A++ G+DKL+DAV +TLGP GRNV++D+ FG+P V  DGVT+A+ +EL DP+EN GA ++REVASKT+D AGDGTTTA+VLA+ I + GL +VT+GANP+ LKRGIDK V G++ EL+K +RPI  + +I  V  ISA ND  IG +IA+A++KVG DGV+                GM+ DRGY+SP FVT
Sbjct:    2 AAKEIHFDAEGRNALKRGVDKLADAVKVTLGPAGRNVIIDKKFGAPTVTKDGVTVAKEVELEDPVENMGAQMVREVASKTSDVAGDGTTTATVLAQAIYREGLKNVTAGANPMDLKRGIDKAVTGVIIELKKISRPIADKKEIAQVGCISANNDSEIGDLIAEAMEKVGKDGVITVEEAKGTETELKVVEGMQFDRGYLSPYFVT 206          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH602_SYNJA (60 kDa chaperonin 2 OS=Synechococcus sp. (strain JA-3-3Ab) GN=groL2 PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.037e-56
Identity = 112/204 (54.90%), Postives = 150/204 (73.53%), Query Frame = 2
Query:   80 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            AK I F + +R A++ G+D L++AV +TLGP+GRNVVL++ FG+P++VNDGVTIA+ IEL D +EN G +LIR+ ASKTND+AGDGTTTA+VLA  ++K GL +V +GANP++LKRGIDK V  LV+++ + ARP+E    I  VA ISAGND+ +G MIA+A+DKVG +GV+                GM  D+GYISP FVT
Sbjct:    2 AKSIIFSEEARRALEHGMDILAEAVAVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDHIENTGVSLIRQAASKTNDTAGDGTTTATVLAHAMVKEGLKNVAAGANPIALKRGIDKAVKFLVDKIAEHARPVEDSKAIAQVAAISAGNDEEVGRMIAEAMDKVGREGVISLEEGKSMTTELEVTEGMRFDKGYISPYFVT 205          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH601_SYNJB (60 kDa chaperonin 1 OS=Synechococcus sp. GN=groL1 PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.966e-56
Identity = 111/204 (54.41%), Postives = 150/204 (73.53%), Query Frame = 2
Query:   80 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            AK I F + +R A++ G+D L++AV +TLGP+GRNVVL++ FG+P+++NDGVTIA+ IEL D +EN G +LIR+ ASKTND+AGDGTTTA+VLA  ++K GL +V +GANP++LKRGIDK V  LV+++ + ARP+E    I  VA ISAGND+ +G MIA+A+DKVG +GV+                GM  D+GYISP FVT
Sbjct:    2 AKSIIFSEEARRALEHGMDILAEAVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVSLIRQAASKTNDTAGDGTTTATVLAHAMVKEGLKNVAAGANPIALKRGIDKAVKFLVDKIAEHARPVEDSKAIAQVAAISAGNDEEVGRMIAEAMDKVGREGVISLEEGKSMTTELEVTEGMRFDKGYISPYFVT 205          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_THEEB (60 kDa chaperonin OS=Thermosynechococcus elongatus (strain BP-1) GN=groL PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.180e-56
Identity = 111/204 (54.41%), Postives = 149/204 (73.04%), Query Frame = 2
Query:   80 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            AK I +++ +R A++ G+D L+++V +TLGP+GRNVVL++ FG+P++VNDGVTIA+ IEL D +EN G ALIR+ ASKTND+AGDGTTTA+VLA  ++K GL +V +GANP++LKRGIDK    LVE++ + ARP+E    I  VA ISAGND+ +G MIADA+DKVG +GV+                GM  D+GYISP F T
Sbjct:    2 AKRIIYNENARRALEKGMDILAESVAVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKEGLRNVAAGANPIALKRGIDKATQFLVEKIAEHARPVEDSKAIAQVAAISAGNDEEVGRMIADAMDKVGKEGVISLEEGKSMTTELEVTEGMRFDKGYISPYFAT 205          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_GEMAT (60 kDa chaperonin OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=groL PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.180e-56
Identity = 109/205 (53.17%), Postives = 155/205 (75.61%), Query Frame = 2
Query:   77 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            +AK++ F+  +RAA++ G+D+L++AV +TLGP+GRNVV+D+ FG+P V  DGVT+A+ IELADP+EN GA +++EVA+KT+D AGDGTTTA+VLA+ I + GL +VT+G+NP++LKRGI+K V G+VEEL++ + P  G+ +I  V TISA ND  IG +IA+A++KVG DGV+                GM+ DRGY+SP FVT
Sbjct:    2 AAKELHFNVDARAALKRGVDQLAEAVKVTLGPKGRNVVIDKKFGAPTVTKDGVTVAKEIELADPIENMGAQMVKEVATKTSDLAGDGTTTATVLAQAIFREGLKNVTAGSNPMALKRGIEKAVAGIVEELKRISVPTTGKKEIAQVGTISANNDPEIGNLIAEAMEKVGKDGVITVEEAKGLETTLETVDGMQFDRGYLSPYFVT 206          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH601_THEVL (60 kDa chaperonin 1 OS=Thermosynechococcus vulcanus GN=groL1 PE=3 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 5.180e-56
Identity = 111/204 (54.41%), Postives = 149/204 (73.04%), Query Frame = 2
Query:   80 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            AK I +++ +R A++ G+D L+++V +TLGP+GRNVVL++ FG+P++VNDGVTIA+ IEL D +EN G ALIR+ ASKTND+AGDGTTTA+VLA  ++K GL +V +GANP++LKRGIDK    LVE++ + ARP+E    I  VA ISAGND+ +G MIADA+DKVG +GV+                GM  D+GYISP F T
Sbjct:    2 AKRIIYNENARRALEKGMDILAESVAVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKEGLRNVAAGANPIALKRGIDKATQFLVEKIAEHARPVEDSKAIAQVAAISAGNDEEVGRMIADAMDKVGKEGVISLEEAKSMTTELEVTEGMRFDKGYISPYFAT 205          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_PELPB (60 kDa chaperonin OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=groL PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.765e-56
Identity = 111/205 (54.15%), Postives = 147/205 (71.71%), Query Frame = 2
Query:   77 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            +AKDI FD  +RA ++ G+DKL++AV +TLGP GRNV++D+ FG+P    DGVT+A+ IEL+DP EN GA ++REVASKT+D AGDGTTTA+VLA+ I + GL +V +GA P+ LKRGID+ V  +V+EL   +R I G+ +I  V TISA ND +IG +IADA+DKVG DGV+                GM+ DRGY+SP FVT
Sbjct:    2 TAKDILFDSDARAKLKVGVDKLANAVKVTLGPAGRNVLIDKKFGAPTSTKDGVTVAKEIELSDPFENMGAQMVREVASKTSDVAGDGTTTATVLAQAIYREGLKNVAAGARPIDLKRGIDRAVKEVVQELRNISRSISGKKEIAQVGTISANNDPVIGDLIADAMDKVGKDGVITVEEAKGMDTELKVVEGMQFDRGYLSPYFVT 206          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_AMOA5 (60 kDa chaperonin OS=Amoebophilus asiaticus (strain 5a2) GN=groL PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 8.835e-56
Identity = 108/204 (52.94%), Postives = 146/204 (71.57%), Query Frame = 2
Query:   80 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            AK I FD  +RA +++G+D +++AV +TLGP+GRNVV+D+ +G+P +  DG+++A+ IEL DP+EN GA LI+EVASKT D AGDGTTTA+VLA+ I   G+ +V +GANP+ LKRG+DK +  +VE L++ +R I    +I+ VATISA ND  IG MIADA+DKVG DGV+                GME DRGY+SP FVT
Sbjct:    2 AKHIIFDSEARAKLKSGVDTMANAVKVTLGPKGRNVVIDKKYGAPSITKDGISVAKEIELKDPVENLGAQLIKEVASKTADGAGDGTTTATVLAQSIFSAGIKNVAAGANPMDLKRGVDKAIEAVVERLKQNSRKISNSKEIEQVATISANNDSKIGKMIADAMDKVGKDGVITVEEAKGTETEVKVVEGMEFDRGYLSPYFVT 205          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_SYMTH (60 kDa chaperonin OS=Symbiobacterium thermophilum GN=groL PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.968e-55
Identity = 115/205 (56.10%), Postives = 143/205 (69.76%), Query Frame = 2
Query:   77 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            +AK I FD+ +R  +QAG+D L++ V +TLGPRGRNVVLD+ FG+P V NDGVTIAR IEL DP EN GA L++EVA+KTND AGDGTTT++VLA+ I+K GL +VT GANP+ LKRGI+K V   VEEL K+A P+E    I  VA ISA ND  IG ++A A+D VG DGV+                GM+ DRGY+S   VT
Sbjct:    2 TAKQIIFDEAARRKLQAGVDALANTVKVTLGPRGRNVVLDKKFGAPAVANDGVTIAREIELEDPFENMGAQLVKEVATKTNDVAGDGTTTSTVLAQAIVKEGLKNVTGGANPMILKRGIEKAVQVAVEELRKQAIPVETNKAIAEVAAISANNDREIGELVAKAMDTVGKDGVITVEESKTLHTELETVEGMQFDRGYVSAYMVT 206          
The following BLAST results are available for this feature:
BLAST of CX295095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_LEPBJ1.363e-5654.9060 kDa chaperonin OS=Leptospira borgpetersenii ser... [more]
CH60_CHLT32.325e-5654.6360 kDa chaperonin OS=Chloroherpeton thalassium (st... [more]
CH602_SYNJA3.037e-5654.9060 kDa chaperonin 2 OS=Synechococcus sp. (strain J... [more]
CH601_SYNJB3.966e-5654.4160 kDa chaperonin 1 OS=Synechococcus sp. GN=groL1 ... [more]
CH60_THEEB5.180e-5654.4160 kDa chaperonin OS=Thermosynechococcus elongatus... [more]
CH60_GEMAT5.180e-5653.1760 kDa chaperonin OS=Gemmatimonas aurantiaca (stra... [more]
CH601_THEVL5.180e-5654.4160 kDa chaperonin 1 OS=Thermosynechococcus vulcanu... [more]
CH60_PELPB6.765e-5654.1560 kDa chaperonin OS=Pelodictyon phaeoclathratifor... [more]
CH60_AMOA58.835e-5652.9460 kDa chaperonin OS=Amoebophilus asiaticus (strai... [more]
CH60_SYMTH1.968e-5556.1060 kDa chaperonin OS=Symbiobacterium thermophilum ... [more]

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Properties
Property NameValue
Genbank descriptionC05068E08SK DroRLeaf1 Citrus clementina cDNA clone C05068E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295095 ID=CX295095; Name=CX295095; organism=Citrus clementina; type=EST; length=711bp
GAGGGGGGAGCTTGAGGAGGAGAGGAATCAGAATCAGGGTCAGAGAGTAA
ATTACAGGAGATTCGCTGTTAGAGCGTCTGCCAAAGATATTGCTTTTGAC
CAGATCTCCAGGGCCGCAATGCAGGCCGGCATCGATAAGCTTTCCGATGC
TGTTGGCCTTACTCTGGGTCCAAGAGGGAGAAATGTTGTTCTGGATGAAT
TTGGAAGTCCGAAAGTGGTTAATGATGGAGTAACAATAGCCCGAGCTATT
GAGCTCGCAGATCCCATGGAAAATGCTGGTGCTGCTCTTATTAGGGAGGT
TGCAAGCAAAACCAATGACTCTGCTGGTGATGGAACAACAACTGCATCAG
TTCTTGCACGAGAAATAATTAAACTAGGACTCCTGAGTGTCACGTCTGGT
GCAAATCCTGTCTCCTTGAAGAGAGGGATTGATAAAACTGTACATGGGTT
GGTAGAAGAGTTGGAGAAGAGGGCCAGGCCTATCGAAGGTCGTGATGATA
TCAAAGCTGTTGCTACCATCTCTGCTGGGAATGATGACCTGATTGGGACA
ATGATCGCCGATGCAATTGACAAGGTTGGTCCTGATGGCGTCTTGTCAAT
CGAGTCATCATCATCATTTGAGACTACTGTTGAAGTTGAGGAAGGAATGG
AGATTGACAGGGGTTACATCTCTCCTCAGTTTGTCACAACCCTGAGAAAT
TATTGTTGAAT
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