CX295095

Overview
NameCX295095
Unique NameCX295095
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH602_BRASO (60 kDa chaperonin 2 OS=Bradyrhizobium sp. (strain ORS278) GN=groL2 PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.462e-50
Identity = 103/205 (50.24%), Postives = 138/205 (67.32%), Query Frame = 2
Query:   77 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            SAKD+ F   +R  M  G+D L++AV +TLGP+GRNVVLD+ FG+P++  DGVT+A+ IEL D  EN GA ++REVASK+ D+AGDGTTTA+VLA+ I++ G  +V +G NP+ LKRGID  V  +V +L K ++ +   D+I  V TISA  D  IG  +ADA+ KVG +GV+                GM+ DRGYISP FVT
Sbjct:    2 SAKDVKFGVEARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELDDKFENMGAQMVREVASKSADAAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTSNDEIAQVGTISANGDSEIGKFLADAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVT 206          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH601_SYNFM (60 kDa chaperonin 1 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=groL1 PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.462e-50
Identity = 102/204 (50.00%), Postives = 143/204 (70.10%), Query Frame = 2
Query:   80 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            AK + +D  +R A+ +G++ L+DAV +TLGP+GRNVV+++ FG P V  DGVT+A+ IEL D  EN GA +++EVASKT+D AGDGTTTA++LA+ I   G   V +GANP++LKRGI+K V  +V+EL+K ++P + + +I  V TISA ND  IG +IA+A++KVG +GV+                GM+ DRGYISP FVT
Sbjct:    2 AKQLIYDVKAREALLSGVNILADAVKVTLGPKGRNVVIEKAFGGPTVTKDGVTVAKEIELEDKFENMGAQMVKEVASKTSDVAGDGTTTATILAQSIYYEGSKLVAAGANPMALKRGIEKAVQVVVDELKKISKPTKDQKEIAQVGTISANNDPTIGNIIAEAMNKVGKEGVITVEEAKAMETTLEVVEGMQFDRGYISPYFVT 205          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH601_RHOPA (60 kDa chaperonin 1 OS=Rhodopseudomonas palustris GN=groL1 PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.462e-50
Identity = 100/205 (48.78%), Postives = 141/205 (68.78%), Query Frame = 2
Query:   77 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            +AKD+ F   +R  M  G+D L++AV +TLGP+GRNV++++ FG+P++  DGVT+A+ +EL D  EN GA ++REVASKTND AGDGTTTA+VLA+ I++ G  +V +G NP+ LKRGI+  V  +V++++KRA+P+    +I  V TISA  D  IG MIA A+ KVG +GV+                GM+ DRGY+SP FVT
Sbjct:    2 AAKDVKFSGDARDRMLRGVDVLANAVKVTLGPKGRNVLIEKSFGAPRITKDGVTVAKEVELEDKFENMGAQMVREVASKTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIEIAVAAVVKDIQKRAKPVASSAEIAQVGTISANGDAPIGKMIAQAMQKVGNEGVITVEENKSLETEVDIVEGMKFDRGYLSPYFVT 206          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH601_BURTA (60 kDa chaperonin 1 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=groL1 PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.462e-50
Identity = 101/204 (49.51%), Postives = 140/204 (68.63%), Query Frame = 2
Query:   77 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFV 685
            +AKD+ F   +RA M  G++ L++AV +TLGP+GRNVVL+  FG P V  DGV++A+ IEL D ++N GA +++EVASKT+D+AGDGTTTA+VLA+ I++ G+  V SG NP+ LKRGIDK V   VEEL+K ++P     +I  V +ISA +D  IG  IA+A+DKVG +GV+                GM+ DRGY+SP F+
Sbjct:    2 AAKDVVFGDSARAKMVEGVNILANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVASGMNPMDLKRGIDKAVAAAVEELKKISKPCTTNKEIAQVGSISANSDSSIGDRIAEAMDKVGKEGVITVEDGKSLADELDVVEGMQFDRGYLSPYFI 205          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_STAHJ (60 kDa chaperonin OS=Staphylococcus haemolyticus (strain JCSC1435) GN=groL PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.236e-49
Identity = 106/204 (51.96%), Postives = 142/204 (69.61%), Query Frame = 2
Query:   80 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLD-EFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            AKD+ F + +R AM  G+DKL++AV +T+GP+GRNVVLD E+ +P + NDGVTIA+ IEL DP EN GA L++EVA+KTN+ AGDGTTTA+VLA+ +I+ GL +VTSGANPV L+ GIDK V   V+ L   ++ +E +++I  V  ISA  D+ IG  I++A+DKVG DGV+                GM+ DRGY SP  VT
Sbjct:    2 AKDLKFSEDARQAMLRGVDKLANAVKVTIGPKGRNVVLDKEYVAPLITNDGVTIAKEIELEDPYENMGAKLVQEVANKTNEIAGDGTTTATVLAQAMIQEGLKNVTSGANPVGLREGIDKAVRVAVQALHDISQKVENKNEIAQVGAISAA-DEEIGKYISEAMDKVGNDGVITIEESNGLDTELEVVEGMQFDRGYQSPYMVT 204          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_RALSO (60 kDa chaperonin OS=Ralstonia solanacearum GN=groL PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.236e-49
Identity = 100/204 (49.02%), Postives = 140/204 (68.63%), Query Frame = 2
Query:   77 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFV 685
            +AKD+ F   +RA M  G++ L++AV +TLGP+GRNVVL+  FG P V  DGV++A+ IEL D ++N GA +++EVASKT+D+AGDGTTTA+VLA+ I++ G+  V +G NP+ LKRGIDK V   VEEL+K ++P     +I  V  ISA +D+ IG  IA+A+DKVG +GV+                GM+ DRGY+SP F+
Sbjct:    2 AAKDVVFGDAARAKMVEGVNILANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVAAGMNPMDLKRGIDKAVAAAVEELKKISKPTTTSKEIAQVGAISANSDESIGARIAEAMDKVGKEGVITVEDGKSLEDELDVVEGMQFDRGYLSPYFI 205          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_PELCD (60 kDa chaperonin OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=groL PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.236e-49
Identity = 101/205 (49.27%), Postives = 144/205 (70.24%), Query Frame = 2
Query:   77 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            SAK+I F Q +R+ + +G+++L+DAV +TLGP+GRNVV+D  FG+P +  DGV++A+ IEL +  EN GA L++EVASKT+D AGDGTTTA+VLA+ I + G+  VT+G NP+ +KRGIDK V   V  L++ ++PI+   +I  V TISA +D  IG +IA+A++KVG +GV+                GM+ DRGY+SP FVT
Sbjct:    2 SAKEIKFGQDARSLILSGVNQLADAVKVTLGPKGRNVVIDRSFGAPLITKDGVSVAKEIELEEKFENMGAQLVKEVASKTSDVAGDGTTTATVLAQGIYREGVKLVTAGHNPMEIKRGIDKAVEAAVAYLQELSKPIKDHKEIAQVGTISANSDKTIGDIIAEAMEKVGKEGVITVEEAKAMETSLETVEGMQFDRGYLSPYFVT 206          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_PARD8 (60 kDa chaperonin OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=groL PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.236e-49
Identity = 101/205 (49.27%), Postives = 145/205 (70.73%), Query Frame = 2
Query:   80 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGR-DDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            AK+I +D  +R  ++ G+D+L++AV +TLGP+GRNV++++ FG+P +  DGVT+A+ +EL  P EN GA L++EVASKTND+AGDGTTTA+VLA+ II +GL +VT+GANP+ LKRGIDK V  +VE +  +A  +  + + I+ VA ISA  D+ IG +IA+A+ +V  +GV+                GM+ DRGYISP FVT
Sbjct:    2 AKEIKYDMDARDLLKKGVDELANAVKVTLGPKGRNVIIEKKFGAPHITKDGVTVAKEVELTCPFENMGAQLVKEVASKTNDNAGDGTTTATVLAQSIIGVGLKNVTAGANPMDLKRGIDKAVAKVVESIANQAEAVGDKFEKIEHVAKISANGDEAIGKLIAEAMQRVKTEGVITVEEAKGTETTVDVVEGMQFDRGYISPYFVT 206          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_NEIMF (60 kDa chaperonin OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=groL PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.236e-49
Identity = 101/204 (49.51%), Postives = 138/204 (67.65%), Query Frame = 2
Query:   77 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFV 685
            +AKD+ F    R  M  G++ L++AV +TLGP+GRNVV+D  FG P +  DGVT+A+ IEL D  EN GA +++EVASKTND AGDGTTTA+VLA+ I+  G+  VT+G NP  LKRGIDK V  LVEEL+  A+P +   +I  V +ISA +D+ +G +IA+A++KVG +GV+                GM+ DRGY+SP F+
Sbjct:    2 AAKDVQFGNEVRQKMVNGVNILANAVRVTLGPKGRNVVVDRAFGGPHITKDGVTVAKEIELKDKFENMGAQMVKEVASKTNDVAGDGTTTATVLAQSIVAEGMKYVTAGMNPTDLKRGIDKAVAALVEELKNIAKPCDTSKEIAQVGSISANSDEQVGAIIAEAMEKVGKEGVITVEDGKSLENELDVVEGMQFDRGYLSPYFI 205          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_NEIMA (60 kDa chaperonin OS=Neisseria meningitidis serogroup A GN=groL PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.236e-49
Identity = 101/204 (49.51%), Postives = 138/204 (67.65%), Query Frame = 2
Query:   77 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFV 685
            +AKD+ F    R  M  G++ L++AV +TLGP+GRNVV+D  FG P +  DGVT+A+ IEL D  EN GA +++EVASKTND AGDGTTTA+VLA+ I+  G+  VT+G NP  LKRGIDK V  LVEEL+  A+P +   +I  V +ISA +D+ +G +IA+A++KVG +GV+                GM+ DRGY+SP F+
Sbjct:    2 AAKDVQFGNEVRQKMVNGVNILANAVRVTLGPKGRNVVVDRAFGGPHITKDGVTVAKEIELKDKFENMGAQMVKEVASKTNDVAGDGTTTATVLAQSIVAEGMKYVTAGMNPTDLKRGIDKAVAALVEELKNIAKPCDTSKEIAQVGSISANSDEQVGAIIAEAMEKVGKEGVITVEDGKSLENELDVVEGMQFDRGYLSPYFI 205          
The following BLAST results are available for this feature:
BLAST of CX295095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_BRASO9.462e-5050.2460 kDa chaperonin 2 OS=Bradyrhizobium sp. (strain ... [more]
CH601_SYNFM9.462e-5050.0060 kDa chaperonin 1 OS=Syntrophobacter fumaroxidan... [more]
CH601_RHOPA9.462e-5048.7860 kDa chaperonin 1 OS=Rhodopseudomonas palustris ... [more]
CH601_BURTA9.462e-5049.5160 kDa chaperonin 1 OS=Burkholderia thailandensis ... [more]
CH60_STAHJ1.236e-4951.9660 kDa chaperonin OS=Staphylococcus haemolyticus (... [more]
CH60_RALSO1.236e-4949.0260 kDa chaperonin OS=Ralstonia solanacearum GN=gro... [more]
CH60_PELCD1.236e-4949.2760 kDa chaperonin OS=Pelobacter carbinolicus (stra... [more]
CH60_PARD81.236e-4949.2760 kDa chaperonin OS=Parabacteroides distasonis (s... [more]
CH60_NEIMF1.236e-4949.5160 kDa chaperonin OS=Neisseria meningitidis serogr... [more]
CH60_NEIMA1.236e-4949.5160 kDa chaperonin OS=Neisseria meningitidis serogr... [more]

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Properties
Property NameValue
Genbank descriptionC05068E08SK DroRLeaf1 Citrus clementina cDNA clone C05068E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295095 ID=CX295095; Name=CX295095; organism=Citrus clementina; type=EST; length=711bp
GAGGGGGGAGCTTGAGGAGGAGAGGAATCAGAATCAGGGTCAGAGAGTAA
ATTACAGGAGATTCGCTGTTAGAGCGTCTGCCAAAGATATTGCTTTTGAC
CAGATCTCCAGGGCCGCAATGCAGGCCGGCATCGATAAGCTTTCCGATGC
TGTTGGCCTTACTCTGGGTCCAAGAGGGAGAAATGTTGTTCTGGATGAAT
TTGGAAGTCCGAAAGTGGTTAATGATGGAGTAACAATAGCCCGAGCTATT
GAGCTCGCAGATCCCATGGAAAATGCTGGTGCTGCTCTTATTAGGGAGGT
TGCAAGCAAAACCAATGACTCTGCTGGTGATGGAACAACAACTGCATCAG
TTCTTGCACGAGAAATAATTAAACTAGGACTCCTGAGTGTCACGTCTGGT
GCAAATCCTGTCTCCTTGAAGAGAGGGATTGATAAAACTGTACATGGGTT
GGTAGAAGAGTTGGAGAAGAGGGCCAGGCCTATCGAAGGTCGTGATGATA
TCAAAGCTGTTGCTACCATCTCTGCTGGGAATGATGACCTGATTGGGACA
ATGATCGCCGATGCAATTGACAAGGTTGGTCCTGATGGCGTCTTGTCAAT
CGAGTCATCATCATCATTTGAGACTACTGTTGAAGTTGAGGAAGGAATGG
AGATTGACAGGGGTTACATCTCTCCTCAGTTTGTCACAACCCTGAGAAAT
TATTGTTGAAT
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