CX295095

Overview
NameCX295095
Unique NameCX295095
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295095_ssr605 microsatellite CX295095_ssr605:605..616. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6017 contig Ccv1_Contig6017:221..932. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_BURMA (60 kDa chaperonin OS=Burkholderia mallei GN=groL PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.236e-49
Identity = 101/204 (49.51%), Postives = 139/204 (68.14%), Query Frame = 2
Query:   77 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFV 685
            +AKD+ F   +RA M  G++ L++AV +TLGP+GRNVVL+  FG P V  DGV++A+ IEL D ++N GA +++EVASKT+D+AGDGTTTA+VLA+ I++ G+  V SG NP+ LKRGIDK V   VEEL+K ++P     +I  V  ISA +D  IG  IA+A+DKVG +GV+                GM+ DRGY+SP F+
Sbjct:    2 AAKDVVFGDSARAKMVEGVNILANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVASGMNPMDLKRGIDKAVAAAVEELKKISKPCTTNKEIAQVGAISANSDSSIGDRIAEAMDKVGKEGVITVEDGKSLADELDVVEGMQFDRGYLSPYFI 205          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_BURM9 (60 kDa chaperonin OS=Burkholderia mallei (strain NCTC 10229) GN=groL PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.236e-49
Identity = 101/204 (49.51%), Postives = 139/204 (68.14%), Query Frame = 2
Query:   77 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFV 685
            +AKD+ F   +RA M  G++ L++AV +TLGP+GRNVVL+  FG P V  DGV++A+ IEL D ++N GA +++EVASKT+D+AGDGTTTA+VLA+ I++ G+  V SG NP+ LKRGIDK V   VEEL+K ++P     +I  V  ISA +D  IG  IA+A+DKVG +GV+                GM+ DRGY+SP F+
Sbjct:    2 AAKDVVFGDSARAKMVEGVNILANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVASGMNPMDLKRGIDKAVAAAVEELKKISKPCTTNKEIAQVGAISANSDSSIGDRIAEAMDKVGKEGVITVEDGKSLADELDVVEGMQFDRGYLSPYFI 205          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_BURM7 (60 kDa chaperonin OS=Burkholderia mallei (strain NCTC 10247) GN=groL PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.236e-49
Identity = 101/204 (49.51%), Postives = 139/204 (68.14%), Query Frame = 2
Query:   77 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFV 685
            +AKD+ F   +RA M  G++ L++AV +TLGP+GRNVVL+  FG P V  DGV++A+ IEL D ++N GA +++EVASKT+D+AGDGTTTA+VLA+ I++ G+  V SG NP+ LKRGIDK V   VEEL+K ++P     +I  V  ISA +D  IG  IA+A+DKVG +GV+                GM+ DRGY+SP F+
Sbjct:    2 AAKDVVFGDSARAKMVEGVNILANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVASGMNPMDLKRGIDKAVAAAVEELKKISKPCTTNKEIAQVGAISANSDSSIGDRIAEAMDKVGKEGVITVEDGKSLADELDVVEGMQFDRGYLSPYFI 205          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_BORT9 (60 kDa chaperonin OS=Borrelia turicatae (strain 91E135) GN=groL PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.236e-49
Identity = 104/208 (50.00%), Postives = 144/208 (69.23%), Query Frame = 2
Query:   80 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTTLRN 700
            AKDI F++ +R ++ +GI+KLS+AV +TLGP+GRNV++D+ FGSP V  DGV++AR IEL + +EN GA L++EVA KTND AGDGTTTA+VLA  I + GL +V+SG NP+ +K+GI+  V    E++ K A+ I  +++I  VA+ISA ND  IG  IA+A+D+VG DGV+                GM+ DRGY+SP F T   N
Sbjct:    2 AKDIYFNEDARKSLLSGIEKLSNAVKVTLGPKGRNVLIDKKFGSPTVTKDGVSVAREIELDNALENMGAQLLKEVAIKTNDLAGDGTTTATVLAYAIAREGLKNVSSGINPIGIKKGIEHAVTLASEKIRKSAKKITTKEEIAQVASISANNDTSIGEKIAEAMDRVGKDGVITVEESKTFDTTISYVEGMQFDRGYLSPYFSTNKEN 209          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_BORRA (60 kDa chaperonin OS=Borrelia recurrentis (strain A1) GN=groL PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.236e-49
Identity = 104/208 (50.00%), Postives = 143/208 (68.75%), Query Frame = 2
Query:   80 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTTLRN 700
            AKDI F++ +R ++ +GI+KLS+AV +TLGP+GRNV++D+ FGSP V  DGV++AR I+L +  EN GA L++EVA KTND AGDGTTTA+VLA  I + GL +V+SG NP+ +K+GID  V    E++ K A+ I  +++I  VA+ISA ND  IG  IA+A+D+VG DGV+                GM+ DRGY+SP F T   N
Sbjct:    2 AKDIYFNEDARKSLLSGIEKLSNAVKVTLGPKGRNVLIDKKFGSPIVTKDGVSVAREIDLENSFENMGAQLLKEVAIKTNDLAGDGTTTATVLAYAIAREGLKNVSSGINPIGIKKGIDHAVALAAEKIRKSAKKITTKEEIAQVASISANNDTSIGEKIAEAMDRVGKDGVITVEESKTFDTTISYVEGMQFDRGYLSPYFSTNKEN 209          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_BORDL (60 kDa chaperonin OS=Borrelia duttonii (strain Ly) GN=groL PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.236e-49
Identity = 104/208 (50.00%), Postives = 143/208 (68.75%), Query Frame = 2
Query:   80 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTTLRN 700
            AKDI F++ +R ++ +GI+KLS+AV +TLGP+GRNV++D+ FGSP V  DGV++AR I+L +  EN GA L++EVA KTND AGDGTTTA+VLA  I + GL +V+SG NP+ +K+GID  V    E++ K A+ I  +++I  VA+ISA ND  IG  IA+A+D+VG DGV+                GM+ DRGY+SP F T   N
Sbjct:    2 AKDIYFNEDARKSLLSGIEKLSNAVKVTLGPKGRNVLIDKKFGSPIVTKDGVSVAREIDLENSFENMGAQLLKEVAIKTNDLAGDGTTTATVLAYAIAREGLKNVSSGINPIGIKKGIDHAVALAAEKIRKSAKKITTKEEIAQVASISANNDTSIGEKIAEAMDRVGKDGVITVEESKTFDTTISYVEGMQFDRGYLSPYFSTNKEN 209          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH60_BACV8 (60 kDa chaperonin OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=groL PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.236e-49
Identity = 101/205 (49.27%), Postives = 143/205 (69.76%), Query Frame = 2
Query:   80 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPI-EGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            AKDI F+  +R  ++ G+D+L++AV +TLGP+GRNV++++ FG+P +  DGVT+A+ +ELAD  +N GA L++ VASKT D AGDGTTTA+VLA+ I+ +GL +VT+GANP+ LKRGIDK V  +VE ++ +A  + +  D I+ VA +SA ND  IG +IADA+ KV  DGV+                GM+ DRGY+S  FVT
Sbjct:    2 AKDIKFNIDARDELKKGVDELANAVKVTLGPKGRNVIIEKKFGAPHITKDGVTVAKEVELADAFQNTGAQLVKSVASKTGDDAGDGTTTATVLAQSIVGVGLKNVTAGANPMDLKRGIDKAVAKVVESIKSQAEMVGDNYDKIEQVAAVSANNDPTIGKLIADAMRKVSKDGVITIEEAKGTDTTIGVVEGMQFDRGYLSAYFVT 206          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH603_SINMW (60 kDa chaperonin 3 OS=Sinorhizobium medicae (strain WSM419) GN=groL3 PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.236e-49
Identity = 101/205 (49.27%), Postives = 139/205 (67.80%), Query Frame = 2
Query:   77 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            +AK++ F   +R  M  G+D L++AV +TLGP+GRNVV+D+ FG+P++  DGV++A+ IEL D  EN GA ++REVASKTND AGDGTTTA+VLA+ I++ G  ++ SG NP+ LKRGID  V  +V+EL+  AR I    +I  V TISA  D  IG  +A+A++KVG +GV+                GM+ DRGY+SP FVT
Sbjct:    2 AAKEVKFQADARERMLRGVDVLANAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELEDKFENMGAQMLREVASKTNDLAGDGTTTATVLAQAIVREGAKAIASGMNPMDLKRGIDLAVDAVVKELKSNARKISQNSEIAQVGTISANGDTEIGRYLAEAMEKVGNEGVITVEEAKTSDTELEVVEGMQFDRGYLSPYFVT 206          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH603_RHOBA (60 kDa chaperonin 3 OS=Rhodopirellula baltica GN=groL3 PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.236e-49
Identity = 101/203 (49.75%), Postives = 138/203 (67.98%), Query Frame = 2
Query:   83 KDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            K IAFDQ +R A++ G+ KL+  V +TLGP+GRNV+L + FGSP V  DGVT+A+ IEL DP EN GA+++REVASKT+D AGDGTTTA+V+A  I   GL +V +G NP+ +K GI+  V  + E+L   A  ++ ++ +  VATI++ ND  IGT++ADA+ KVG DGV+                GM+ DRGY+SP FVT
Sbjct:    3 KIIAFDQEAREAIRRGVSKLARTVKVTLGPKGRNVILQKSFGSPTVTKDGVTVAKEIELEDPYENMGASMVREVASKTSDVAGDGTTTATVMAEAIFNEGLKAVVAGVNPIQMKSGIETAVSDITEQLHSMAVKVKDQEAMANVATIASNNDREIGTLLADAMSKVGKDGVITVDEGKSLQTEQEWVEGMQFDRGYLSPYFVT 205          
BLAST of CX295095 vs. ExPASy Swiss-Prot
Match: CH603_BRASB (60 kDa chaperonin 3 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=groL3 PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.236e-49
Identity = 102/205 (49.76%), Postives = 138/205 (67.32%), Query Frame = 2
Query:   77 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVT 688
            +AKD+ F   +R  M  G+D L++AV +TLGP+GRNVV+++ FG+P++  DGVT+A+ IEL D  EN GA ++REVASKT D AGDGTTTA+VLA+ I+K G  SV +G NP+ LKRGID  V  +V +L+  A+ I   D+I  V TISA  D+ IG  +A+A+ KVG +GV+                GM+ DRGY+SP FVT
Sbjct:    2 AAKDVKFSTDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTADLAGDGTTTATVLAQAIVKEGAKSVAAGMNPMDLKRGIDLAVDAIVADLKAHAKKITSNDEIAQVGTISANGDNEIGRFLAEAMQKVGNEGVITVEEAKSLDTELEVVEGMQFDRGYVSPYFVT 206          
The following BLAST results are available for this feature:
BLAST of CX295095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_BURMA1.236e-4949.5160 kDa chaperonin OS=Burkholderia mallei GN=groL P... [more]
CH60_BURM91.236e-4949.5160 kDa chaperonin OS=Burkholderia mallei (strain N... [more]
CH60_BURM71.236e-4949.5160 kDa chaperonin OS=Burkholderia mallei (strain N... [more]
CH60_BORT91.236e-4950.0060 kDa chaperonin OS=Borrelia turicatae (strain 91... [more]
CH60_BORRA1.236e-4950.0060 kDa chaperonin OS=Borrelia recurrentis (strain ... [more]
CH60_BORDL1.236e-4950.0060 kDa chaperonin OS=Borrelia duttonii (strain Ly)... [more]
CH60_BACV81.236e-4949.2760 kDa chaperonin OS=Bacteroides vulgatus (strain ... [more]
CH603_SINMW1.236e-4949.2760 kDa chaperonin 3 OS=Sinorhizobium medicae (stra... [more]
CH603_RHOBA1.236e-4949.7560 kDa chaperonin 3 OS=Rhodopirellula baltica GN=g... [more]
CH603_BRASB1.236e-4949.7660 kDa chaperonin 3 OS=Bradyrhizobium sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC05068E08SK DroRLeaf1 Citrus clementina cDNA clone C05068E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295095 ID=CX295095; Name=CX295095; organism=Citrus clementina; type=EST; length=711bp
GAGGGGGGAGCTTGAGGAGGAGAGGAATCAGAATCAGGGTCAGAGAGTAA
ATTACAGGAGATTCGCTGTTAGAGCGTCTGCCAAAGATATTGCTTTTGAC
CAGATCTCCAGGGCCGCAATGCAGGCCGGCATCGATAAGCTTTCCGATGC
TGTTGGCCTTACTCTGGGTCCAAGAGGGAGAAATGTTGTTCTGGATGAAT
TTGGAAGTCCGAAAGTGGTTAATGATGGAGTAACAATAGCCCGAGCTATT
GAGCTCGCAGATCCCATGGAAAATGCTGGTGCTGCTCTTATTAGGGAGGT
TGCAAGCAAAACCAATGACTCTGCTGGTGATGGAACAACAACTGCATCAG
TTCTTGCACGAGAAATAATTAAACTAGGACTCCTGAGTGTCACGTCTGGT
GCAAATCCTGTCTCCTTGAAGAGAGGGATTGATAAAACTGTACATGGGTT
GGTAGAAGAGTTGGAGAAGAGGGCCAGGCCTATCGAAGGTCGTGATGATA
TCAAAGCTGTTGCTACCATCTCTGCTGGGAATGATGACCTGATTGGGACA
ATGATCGCCGATGCAATTGACAAGGTTGGTCCTGATGGCGTCTTGTCAAT
CGAGTCATCATCATCATTTGAGACTACTGTTGAAGTTGAGGAAGGAATGG
AGATTGACAGGGGTTACATCTCTCCTCAGTTTGTCACAACCCTGAGAAAT
TATTGTTGAAT
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