CX295096

Overview
NameCX295096
Unique NameCX295096
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295096_ssr137 microsatellite CX295096_ssr137:137..156. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14254 contig Ccv1_Contig14254:263..987. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CESA9_ARATH (Probable cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Arabidopsis thaliana GN=CESA9 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.784e-27
Identity = 74/195 (37.95%), Postives = 95/195 (48.72%), Query Frame = 2
Query:  182 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF---------XXXXXXXXXXXXXXQDWKNMKVISENKGGLSDEIP------------------------------------------HLVYISREKRPKHPHHYKAGAMNVL 613
            EL PVD+FV+T D   EPP+IT NTVLS+LAVDYPV K+ACYVSDD  + L F +L   ++FA+ WVPFCKK++++ RAP  YF                       +D++  KV       +S ++P                                           LVY+SREKRP   HH KAGAMN L
Sbjct:  357 ELAPVDVFVSTVDPLKEPPLITANTVLSILAVDYPVEKVACYVSDDGAAMLTFEALSYTAEFARKWVPFCKKFSIEPRAPEWYFSQKMDYLKHKVDPAFVMERRAMKRDYEEFKVKINALVSVSQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGHSGVCDMDGNELPRLVYVSREKRPGFDHHKKAGAMNSL 551          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CSLE2_ORYSJ (Cellulose synthase-like protein E2 OS=Oryza sativa subsp. japonica GN=CSLE2 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.671e-25
Identity = 72/196 (36.73%), Postives = 95/196 (48.47%), Query Frame = 2
Query:  182 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYFXXXXXXXXXXXXXXQDWKNMK------------------------------------------------VISENKGGLSD----EIPHLVYISREKRPKHPHHYKAGAMNVL 613
            ELP VD+FV TAD   EPP++ ++TVLS++A DY   KL  Y+SDDA S L FY L EAS+FAK W+PFCKKY V+ R+P  YF              ++W  MK                                                +I  NK    D     +P LVY++REK+P+  HH+KAG++N L
Sbjct:  110 ELPSVDIFVCTADPTAEPPMLVISTVLSVMAYDYLPEKLNIYLSDDAGSVLTFYVLCEASEFAKHWIPFCKKYKVEPRSPAAYF--AKVASPPDGCGPKEWFTMKELYKDMTDRVNSVVNSGRIPEVPRCHSRGFSQWNENFTSSDHPSIVQILIDSNKQKAVDIDGNALPTLVYMAREKKPQKQHHFKAGSLNAL 303          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CESA4_ARATH (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Arabidopsis thaliana GN=CESA4 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.182e-25
Identity = 55/84 (65.48%), Postives = 67/84 (79.76%), Query Frame = 2
Query:  182 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 433
            +L PVD+FV+T D   EPPIIT NT+LS+LAVDYPV+K++CYVSDD  S L F +L E S+FA+ WVPFCKKYNV+ RAP  YF
Sbjct:  290 KLAPVDVFVSTVDPLKEPPIITANTILSILAVDYPVNKVSCYVSDDGASMLLFDTLSETSEFARRWVPFCKKYNVEPRAPEFYF 373          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CESA6_ORYSJ (Probable cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA6 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.350e-25
Identity = 51/84 (60.71%), Postives = 65/84 (77.38%), Query Frame = 2
Query:  182 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 433
            +L PVD FV+T D   EPP++T NTVLS+L+VDYPV K++CYVSDD  + L F +L E S+FAK WVPFCKK+N++ RAP  YF
Sbjct:  354 QLAPVDFFVSTVDPSKEPPLVTANTVLSILSVDYPVEKVSCYVSDDGAAMLTFEALSETSEFAKKWVPFCKKFNIEPRAPEWYF 437          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CSLD3_ARATH (Cellulose synthase-like protein D3 OS=Arabidopsis thaliana GN=CSLD3 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.293e-25
Identity = 50/84 (59.52%), Postives = 66/84 (78.57%), Query Frame = 2
Query:  182 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 433
            +LP +DMFV+TAD E EPP++T NT+LS+LA DYPV KLACYVSDD  + L F ++ EA+ FA +WVPFC+K+N++ R P  YF
Sbjct:  374 DLPGLDMFVSTADPEKEPPLVTSNTILSILAADYPVEKLACYVSDDGGALLTFEAMAEAASFANMWVPFCRKHNIEPRNPDSYF 457          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSJ (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.083e-24
Identity = 51/84 (60.71%), Postives = 66/84 (78.57%), Query Frame = 2
Query:  182 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 433
            +L PVD+FV+T D   EPP++T NTVLS+LAVDYPV K++CYVSDD  + L F +L E S+FA+ WVPFCKKY+++ RAP  YF
Sbjct:  344 QLAPVDIFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFDALAETSEFARKWVPFCKKYSIEPRAPEWYF 427          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSI (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.083e-24
Identity = 51/84 (60.71%), Postives = 66/84 (78.57%), Query Frame = 2
Query:  182 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 433
            +L PVD+FV+T D   EPP++T NTVLS+LAVDYPV K++CYVSDD  + L F +L E S+FA+ WVPFCKKY+++ RAP  YF
Sbjct:  344 QLAPVDIFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFDALAETSEFARKWVPFCKKYSIEPRAPEWYF 427          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CESA1_ARATH (Cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Arabidopsis thaliana GN=CESA1 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.083e-24
Identity = 52/84 (61.90%), Postives = 66/84 (78.57%), Query Frame = 2
Query:  182 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 433
            +L PVD+FV+T D   EPP++T NTVLS+L+VDYPV K+ACYVSDD  + L F SL E ++FAK WVPFCKK+N++ RAP  YF
Sbjct:  350 QLVPVDVFVSTVDPLKEPPLVTANTVLSILSVDYPVDKVACYVSDDGSAMLTFESLSETAEFAKKWVPFCKKFNIEPRAPEFYF 433          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CSLD4_ARATH (Cellulose synthase-like protein D4 OS=Arabidopsis thaliana GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.415e-24
Identity = 48/84 (57.14%), Postives = 68/84 (80.95%), Query Frame = 2
Query:  182 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 433
            +LP +D+FV+TAD E EPP++T NT+LS+LAVDYPV K++CY+SDD  + L+F ++ EA+ FA LWVPFC+K+N++ R P  YF
Sbjct:  352 DLPGIDLFVSTADPEKEPPLVTANTILSILAVDYPVEKVSCYLSDDGGALLSFEAMAEAASFADLWVPFCRKHNIEPRNPDSYF 435          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CESAA_ARATH (Probable cellulose synthase A catalytic subunit 10 [UDP-forming] OS=Arabidopsis thaliana GN=CESA10 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.415e-24
Identity = 51/84 (60.71%), Postives = 66/84 (78.57%), Query Frame = 2
Query:  182 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 433
            +L PVD+FV+T D   EPP++T NTVLS+LAVDYPV K+ACYVSDD  + L F +L E ++F+K WVPFCKK+N++ RAP  YF
Sbjct:  337 QLAPVDVFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVACYVSDDGSAMLTFEALSETAEFSKKWVPFCKKFNIEPRAPEFYF 420          
The following BLAST results are available for this feature:
BLAST of CX295096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CESA9_ARATH6.784e-2737.95Probable cellulose synthase A catalytic subunit 9 ... [more]
CSLE2_ORYSJ1.671e-2536.73Cellulose synthase-like protein E2 OS=Oryza sativa... [more]
CESA4_ARATH2.182e-2565.48Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA6_ORYSJ6.350e-2560.71Probable cellulose synthase A catalytic subunit 6 ... [more]
CSLD3_ARATH8.293e-2559.52Cellulose synthase-like protein D3 OS=Arabidopsis ... [more]
CESA2_ORYSJ1.083e-2460.71Probable cellulose synthase A catalytic subunit 2 ... [more]
CESA2_ORYSI1.083e-2460.71Probable cellulose synthase A catalytic subunit 2 ... [more]
CESA1_ARATH1.083e-2461.90Cellulose synthase A catalytic subunit 1 [UDP-form... [more]
CSLD4_ARATH1.415e-2457.14Cellulose synthase-like protein D4 OS=Arabidopsis ... [more]
CESAA_ARATH1.415e-2460.71Probable cellulose synthase A catalytic subunit 10... [more]

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Properties
Property NameValue
Genbank descriptionC05068E09SK DroRLeaf1 Citrus clementina cDNA clone C05068E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295096 ID=CX295096; Name=CX295096; organism=Citrus clementina; type=EST; length=725bp
AGGGTCACTGCAAGTGGACTCCTTTTACCTACAAAACATATCCCCAACGT
CTCCAAGAAAGGTAACAAATCAAATAACGTTAGCATTAATAATTTCCGCA
TCATTTGCAATTGTCTTTGTCATTTTGCAAGTTACTACACACACACACAC
ACACACATGTGTACGACTCAACAGGATACAGGAGCTGCCCCCAGTGGACA
TGTTTGTGACAACTGCTGATGCTGAACTCGAGCCGCCAATCATCACTGTA
AACACAGTGCTGTCTTTGTTGGCAGTTGATTATCCAGTTCACAAGCTCGC
TTGCTATGTTTCTGATGATGCCTGCTCACCTCTCAATTTCTACTCTCTTG
TTGAAGCTTCTAAATTCGCTAAGCTTTGGGTTCCATTCTGTAAAAAGTAT
AATGTTCAAATTAGAGCTCCCTTTAGATACTTCCCAGATAGTGAGCCGTC
CGATTCCAGTTCAGGGGAACTCCTGCAAGACTGGAAAAACATGAAGGTTA
TATCGGAGAACAAAGGAGGTCTCTCAGATGAGATACCACATTTAGTTTAC
ATATCAAGAGAGAAAAGGCCAAAGCATCCCCATCACTACAAAGCAGGGGC
CATGAATGTATTGACTGCGACATGTATGCCAACAATCCAGAGATTGTTCT
TCAAGCTATGTGTTTGCATCTGGGCTCCAAGAACGAAAACGAATTTGCGT
TTATTCAATCTCCACAATATTTCTA
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