CX295096

Overview
NameCX295096
Unique NameCX295096
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295096_ssr137 microsatellite CX295096_ssr137:137..156. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14254 contig Ccv1_Contig14254:263..987. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSJ (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA4 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.415e-24
Identity = 52/83 (62.65%), Postives = 64/83 (77.11%), Query Frame = 2
Query:  185 LPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 433
            L PVD FV+T D   EPP+IT NTVLS+LAVDYPV K++CYVSDD  + L F SL E ++FA+ WVPFCKKY+++ RAP  YF
Sbjct:  264 LAPVDFFVSTVDPLKEPPLITANTVLSILAVDYPVEKISCYVSDDGSAMLTFESLAETAEFARRWVPFCKKYSIEPRAPEFYF 346          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSI (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA4 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.415e-24
Identity = 52/83 (62.65%), Postives = 64/83 (77.11%), Query Frame = 2
Query:  185 LPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 433
            L PVD FV+T D   EPP+IT NTVLS+LAVDYPV K++CYVSDD  + L F SL E ++FA+ WVPFCKKY+++ RAP  YF
Sbjct:  264 LAPVDFFVSTVDPLKEPPLITANTVLSILAVDYPVEKISCYVSDDGSAMLTFESLAETAEFARRWVPFCKKYSIEPRAPEFYF 346          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CESA3_ORYSJ (Probable cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA3 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.415e-24
Identity = 51/84 (60.71%), Postives = 65/84 (77.38%), Query Frame = 2
Query:  182 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 433
            +L P+D FV+T D   EPP++T NTVLS+LAVDYPV K++CYVSDD  + L F +L E S+FAK WVPFCKKY+++ RAP  YF
Sbjct:  354 QLAPIDFFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFAKKWVPFCKKYSIEPRAPEWYF 437          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CSLE6_ORYSJ (Cellulose synthase-like protein E6 OS=Oryza sativa subsp. japonica GN=CSLE6 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.413e-24
Identity = 73/227 (32.16%), Postives = 107/227 (47.14%), Query Frame = 2
Query:  104 FAIVFVILQVXXXXXXXXCVRLNRIQE-----LPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYFXXXXXXXXXXXXXXQDWKNMKVISEN----------KGGLSDEI------------------------------------------PHLVYISREKRPKHPHHYKAGAMNVL 613
            FA+ +VI Q             NR+ E     LP VD+FV TAD   EPP + ++T+LS++A +YP  K++ Y+SDD  S L FY+L EAS FAK W+PFC++YN++ R+P  YF              ++W  +K + E            G + +EI                                          P LVY++REK P++ H++KAGA+N L
Sbjct:   65 FAVYWVITQSVRWCPVRRRTFKNRLAERYKENLPGVDVFVCTADPHAEPPSLVISTILSVMAYNYPSEKISVYLSDDGGSILTFYALWEASMFAKKWLPFCRRYNIEPRSPAAYF--SESEGHHNLCSPKEWSFIKNLYEEMRERIDSAVMSGKIPEEIKLKHKGFDEWNSEMTSKNHQPIVQVLIDGKSQNAVDDDGNVLPTLVYMAREKSPQYHHNFKAGALNAL 289          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSJ (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA5 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.151e-24
Identity = 51/84 (60.71%), Postives = 65/84 (77.38%), Query Frame = 2
Query:  182 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 433
            +L PVD FV+T D   EPP++T NTVLS+LAVDYPV K++CYVSDD  + L F +L E S+FAK WVPFCK+Y+++ RAP  YF
Sbjct:  353 QLAPVDFFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFAKKWVPFCKRYSLEPRAPEWYF 436          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSI (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA5 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.151e-24
Identity = 51/84 (60.71%), Postives = 65/84 (77.38%), Query Frame = 2
Query:  182 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 433
            +L PVD FV+T D   EPP++T NTVLS+LAVDYPV K++CYVSDD  + L F +L E S+FAK WVPFCK+Y+++ RAP  YF
Sbjct:  353 QLAPVDFFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFAKKWVPFCKRYSLEPRAPEWYF 436          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CESA3_ARATH (Cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Arabidopsis thaliana GN=CESA3 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.151e-24
Identity = 51/84 (60.71%), Postives = 66/84 (78.57%), Query Frame = 2
Query:  182 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 433
            +L  VD+FV+T D   EPP++T NTVLS+LAVDYPV K++CYVSDD  + L+F SL E S+FA+ WVPFCKKY+++ RAP  YF
Sbjct:  334 QLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLAETSEFARKWVPFCKKYSIEPRAPEWYF 417          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CESA2_ARATH (Cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Arabidopsis thaliana GN=CESA2 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.116e-24
Identity = 51/83 (61.45%), Postives = 65/83 (78.31%), Query Frame = 2
Query:  185 LPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 433
            L PVD+FV+T D   EPP+IT NTVLS+LAVDYPV K+ACYVSDD  + L F +L + ++FA+ WVPFCKK+N++ RAP  YF
Sbjct:  353 LAPVDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSDTAEFARKWVPFCKKFNIEPRAPEWYF 435          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CESA8_ARATH (Cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Arabidopsis thaliana GN=CESA8 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.173e-24
Identity = 51/84 (60.71%), Postives = 65/84 (77.38%), Query Frame = 2
Query:  182 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 433
            +L  VD FV+T D   EPP+IT NTVLS+LA+DYPV K++CYVSDD  + L+F SLVE + FA+ WVPFCKKY+++ RAP  YF
Sbjct:  259 QLAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLSFESLVETADFARKWVPFCKKYSIEPRAPEFYF 342          

HSP 2 Score: 21.9422 bits (45), Expect = 4.173e-24
Identity = 8/17 (47.06%), Postives = 10/17 (58.82%), Query Frame = 3
Query:   12 KWTPFTYKTYPQRLQER 62
            KW+P   +TY  RL  R
Sbjct:  234 KWSPINRETYIDRLSAR 250          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CSLD5_ARATH (Cellulose synthase-like protein D5 OS=Arabidopsis thaliana GN=CSLD5 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.375e-24
Identity = 48/84 (57.14%), Postives = 65/84 (77.38%), Query Frame = 2
Query:  182 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 433
            +LP +D+FV+TAD E EPP++T NT+LS+LAVDYPV KLACY+SDD  + L F +L + + FA  WVPFC+K+N++ R P  YF
Sbjct:  398 DLPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKLACYLSDDGGALLTFEALAQTASFASTWVPFCRKHNIEPRNPEAYF 481          
The following BLAST results are available for this feature:
BLAST of CX295096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CESA4_ORYSJ1.415e-2462.65Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA4_ORYSI1.415e-2462.65Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA3_ORYSJ1.415e-2460.71Probable cellulose synthase A catalytic subunit 3 ... [more]
CSLE6_ORYSJ2.413e-2432.16Cellulose synthase-like protein E6 OS=Oryza sativa... [more]
CESA5_ORYSJ3.151e-2460.71Probable cellulose synthase A catalytic subunit 5 ... [more]
CESA5_ORYSI3.151e-2460.71Probable cellulose synthase A catalytic subunit 5 ... [more]
CESA3_ARATH3.151e-2460.71Cellulose synthase A catalytic subunit 3 [UDP-form... [more]
CESA2_ARATH4.116e-2461.45Cellulose synthase A catalytic subunit 2 [UDP-form... [more]
CESA8_ARATH4.173e-2460.71Cellulose synthase A catalytic subunit 8 [UDP-form... [more]
CSLD5_ARATH5.375e-2457.14Cellulose synthase-like protein D5 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC05068E09SK DroRLeaf1 Citrus clementina cDNA clone C05068E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295096 ID=CX295096; Name=CX295096; organism=Citrus clementina; type=EST; length=725bp
AGGGTCACTGCAAGTGGACTCCTTTTACCTACAAAACATATCCCCAACGT
CTCCAAGAAAGGTAACAAATCAAATAACGTTAGCATTAATAATTTCCGCA
TCATTTGCAATTGTCTTTGTCATTTTGCAAGTTACTACACACACACACAC
ACACACATGTGTACGACTCAACAGGATACAGGAGCTGCCCCCAGTGGACA
TGTTTGTGACAACTGCTGATGCTGAACTCGAGCCGCCAATCATCACTGTA
AACACAGTGCTGTCTTTGTTGGCAGTTGATTATCCAGTTCACAAGCTCGC
TTGCTATGTTTCTGATGATGCCTGCTCACCTCTCAATTTCTACTCTCTTG
TTGAAGCTTCTAAATTCGCTAAGCTTTGGGTTCCATTCTGTAAAAAGTAT
AATGTTCAAATTAGAGCTCCCTTTAGATACTTCCCAGATAGTGAGCCGTC
CGATTCCAGTTCAGGGGAACTCCTGCAAGACTGGAAAAACATGAAGGTTA
TATCGGAGAACAAAGGAGGTCTCTCAGATGAGATACCACATTTAGTTTAC
ATATCAAGAGAGAAAAGGCCAAAGCATCCCCATCACTACAAAGCAGGGGC
CATGAATGTATTGACTGCGACATGTATGCCAACAATCCAGAGATTGTTCT
TCAAGCTATGTGTTTGCATCTGGGCTCCAAGAACGAAAACGAATTTGCGT
TTATTCAATCTCCACAATATTTCTA
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