CX295096

Overview
NameCX295096
Unique NameCX295096
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295096_ssr137 microsatellite CX295096_ssr137:137..156. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14254 contig Ccv1_Contig14254:263..987. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CESA7_ARATH (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Arabidopsis thaliana GN=CESA7 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.375e-24
Identity = 50/83 (60.24%), Postives = 65/83 (78.31%), Query Frame = 2
Query:  185 LPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 433
            L PVD+FV+T D   EPP++T NTVLS+LA+DYPV K++CYVSDD  S L F SL E ++FA+ WVPFCKK++++ RAP  YF
Sbjct:  314 LAPVDVFVSTVDPLKEPPLVTSNTVLSILAMDYPVEKISCYVSDDGASMLTFESLSETAEFARKWVPFCKKFSIEPRAPEMYF 396          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSJ (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.375e-24
Identity = 50/84 (59.52%), Postives = 66/84 (78.57%), Query Frame = 2
Query:  182 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 433
            +L P+D+FV+T D   EPP+IT NTVLS+LAVDYPV K++CYVSDD  + L F +L E ++FA+ WVPFCKK+N++ RAP  YF
Sbjct:  347 QLAPIDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYF 430          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSI (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.375e-24
Identity = 50/84 (59.52%), Postives = 66/84 (78.57%), Query Frame = 2
Query:  182 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 433
            +L P+D+FV+T D   EPP+IT NTVLS+LAVDYPV K++CYVSDD  + L F +L E ++FA+ WVPFCKK+N++ RAP  YF
Sbjct:  347 QLAPIDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYF 430          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CSLD4_ORYSJ (Cellulose synthase-like protein D4 OS=Oryza sativa subsp. japonica GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.021e-24
Identity = 48/84 (57.14%), Postives = 65/84 (77.38%), Query Frame = 2
Query:  182 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 433
            +LP +D+FVT+AD E EPP++T NT+LS+LA DYPV KLACY+SDD  + L+F +L E + FA+ WVPFC+K+ V+ R P  YF
Sbjct:  407 DLPGIDVFVTSADPEKEPPLVTANTILSILAADYPVEKLACYLSDDGGALLSFEALAETASFARTWVPFCRKHGVEPRCPEAYF 490          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CESA6_ARATH (Cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Arabidopsis thaliana GN=CESA6 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.021e-24
Identity = 52/83 (62.65%), Postives = 64/83 (77.11%), Query Frame = 2
Query:  185 LPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 433
            L PVD+FV+T D   EPP+IT NTVLS+LAVDYPV K+ACYVSDD  + L F +L E ++FA+ WVPFCKKY ++ RAP  YF
Sbjct:  352 LSPVDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETAEFARKWVPFCKKYCIEPRAPEWYF 434          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CSLD6_ARATH (Putative cellulose synthase-like protein D6 OS=Arabidopsis thaliana GN=CSLD6 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.169e-24
Identity = 47/84 (55.95%), Postives = 67/84 (79.76%), Query Frame = 2
Query:  182 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 433
            +LP +D+FV+TADAE EPP++T NT+LS+L+VDYPV KL+ Y+SDD  S + F ++ EA+ FAK+WVPFC+K+ ++ R P  YF
Sbjct:  202 DLPGIDVFVSTADAEKEPPLVTANTILSILSVDYPVEKLSVYISDDGGSLVTFEAIAEAASFAKIWVPFCRKHKIEPRNPESYF 285          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSJ (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. japonica GN=CSLD2 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.169e-24
Identity = 48/88 (54.55%), Postives = 67/88 (76.14%), Query Frame = 2
Query:  170 NRIQELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 433
            N   +LP +D+FV+TAD E EPP++T NT+LS+LA DYPV KL+CYVSDD  + L F ++ EA+ FA +WVPFC+K++++ R P  YF
Sbjct:  392 NGRSDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANMWVPFCRKHDIEPRNPESYF 479          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSI (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. indica GN=CSLD2 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.169e-24
Identity = 48/88 (54.55%), Postives = 67/88 (76.14%), Query Frame = 2
Query:  170 NRIQELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 433
            N   +LP +D+FV+TAD E EPP++T NT+LS+LA DYPV KL+CYVSDD  + L F ++ EA+ FA +WVPFC+K++++ R P  YF
Sbjct:  392 NGRSDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANMWVPFCRKHDIEPRNPESYF 479          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CESA5_ARATH (Cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Arabidopsis thaliana GN=CESA5 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.564e-23
Identity = 51/84 (60.71%), Postives = 64/84 (76.19%), Query Frame = 2
Query:  182 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 433
            EL  VD+FV+T D   EPP+IT NTVLS+LAVDYPV ++ACYVSDD  + L F +L E ++FA+ WVPFCKKY ++ RAP  YF
Sbjct:  339 ELAGVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDRVACYVSDDGAAMLTFEALSETAEFARKWVPFCKKYTIEPRAPEWYF 422          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSJ (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA9 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.668e-23
Identity = 50/83 (60.24%), Postives = 64/83 (77.11%), Query Frame = 2
Query:  185 LPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 433
            L  VD+FV+T D   EPP++T NTVLS+LAVDYPV K++CYVSDD  S L F SL E ++FA+ WVPFCKK++++ RAP  YF
Sbjct:  343 LSAVDLFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGASMLTFESLSETAEFARKWVPFCKKFSIEPRAPEFYF 425          
The following BLAST results are available for this feature:
BLAST of CX295096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CESA7_ARATH5.375e-2460.24Cellulose synthase A catalytic subunit 7 [UDP-form... [more]
CESA1_ORYSJ5.375e-2459.52Probable cellulose synthase A catalytic subunit 1 ... [more]
CESA1_ORYSI5.375e-2459.52Probable cellulose synthase A catalytic subunit 1 ... [more]
CSLD4_ORYSJ7.021e-2457.14Cellulose synthase-like protein D4 OS=Oryza sativa... [more]
CESA6_ARATH7.021e-2462.65Cellulose synthase A catalytic subunit 6 [UDP-form... [more]
CSLD6_ARATH9.169e-2455.95Putative cellulose synthase-like protein D6 OS=Ara... [more]
CSLD2_ORYSJ9.169e-2454.55Cellulose synthase-like protein D2 OS=Oryza sativa... [more]
CSLD2_ORYSI9.169e-2454.55Cellulose synthase-like protein D2 OS=Oryza sativa... [more]
CESA5_ARATH1.564e-2360.71Cellulose synthase A catalytic subunit 5 [UDP-form... [more]
CESA9_ORYSJ2.668e-2360.24Cellulose synthase A catalytic subunit 9 [UDP-form... [more]

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Properties
Property NameValue
Genbank descriptionC05068E09SK DroRLeaf1 Citrus clementina cDNA clone C05068E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295096 ID=CX295096; Name=CX295096; organism=Citrus clementina; type=EST; length=725bp
AGGGTCACTGCAAGTGGACTCCTTTTACCTACAAAACATATCCCCAACGT
CTCCAAGAAAGGTAACAAATCAAATAACGTTAGCATTAATAATTTCCGCA
TCATTTGCAATTGTCTTTGTCATTTTGCAAGTTACTACACACACACACAC
ACACACATGTGTACGACTCAACAGGATACAGGAGCTGCCCCCAGTGGACA
TGTTTGTGACAACTGCTGATGCTGAACTCGAGCCGCCAATCATCACTGTA
AACACAGTGCTGTCTTTGTTGGCAGTTGATTATCCAGTTCACAAGCTCGC
TTGCTATGTTTCTGATGATGCCTGCTCACCTCTCAATTTCTACTCTCTTG
TTGAAGCTTCTAAATTCGCTAAGCTTTGGGTTCCATTCTGTAAAAAGTAT
AATGTTCAAATTAGAGCTCCCTTTAGATACTTCCCAGATAGTGAGCCGTC
CGATTCCAGTTCAGGGGAACTCCTGCAAGACTGGAAAAACATGAAGGTTA
TATCGGAGAACAAAGGAGGTCTCTCAGATGAGATACCACATTTAGTTTAC
ATATCAAGAGAGAAAAGGCCAAAGCATCCCCATCACTACAAAGCAGGGGC
CATGAATGTATTGACTGCGACATGTATGCCAACAATCCAGAGATTGTTCT
TCAAGCTATGTGTTTGCATCTGGGCTCCAAGAACGAAAACGAATTTGCGT
TTATTCAATCTCCACAATATTTCTA
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