CX295096

Overview
NameCX295096
Unique NameCX295096
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295096_ssr137 microsatellite CX295096_ssr137:137..156. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14254 contig Ccv1_Contig14254:263..987. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CSLE1_ORYSJ (Cellulose synthase-like protein E1 OS=Oryza sativa subsp. japonica GN=CSLE1 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 2.829e-22
Identity = 46/85 (54.12%), Postives = 64/85 (75.29%), Query Frame = 2
Query:  179 QELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 433
            Q LP VD+FV TAD + EPP + ++T+LS++A +YP  K++ Y+SDD  S L FY+L EAS FAK W+PFCK+YN++ R+P  YF
Sbjct:  100 QNLPGVDIFVCTADPQSEPPSLVISTILSVMAYNYPSEKISVYLSDDGGSILTFYALWEASIFAKKWLPFCKRYNIEPRSPAAYF 184          

HSP 2 Score: 23.0978 bits (48), Expect = 2.829e-22
Identity = 8/17 (47.06%), Postives = 11/17 (64.71%), Query Frame = 3
Query:   12 KWTPFTYKTYPQRLQER 62
            +W PF  +T+  RL ER
Sbjct:   81 RWRPFRRRTFRDRLAER 97          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CSLF7_ORYSJ (Probable mixed-linked glucan synthase 7 OS=Oryza sativa subsp. japonica GN=CSLF7 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.121e-21
Identity = 52/113 (46.02%), Postives = 74/113 (65.49%), Query Frame = 2
Query:  104 FAIVFVILQVXXXXXXXXCVRLNRIQE---LPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 433
            FA ++V+ Q+         V +  + +   LP +D+FVTTAD + EPP+ T NTVLS+LA  YP  K+ CYVSDDA + +   ++VEA++FA LWVPFC+K+ V+ R P  YF
Sbjct:  112 FAFMWVLDQLPKTMPVRRAVDVTALNDDTLLPAMDVFVTTADPDKEPPLATANTVLSILAAGYPAGKVTCYVSDDAGAEVTRGAVVEAARFAALWVPFCRKHGVEPRNPEAYF 224          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CSLG1_ARATH (Cellulose synthase-like protein G1 OS=Arabidopsis thaliana GN=CSLG1 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.912e-21
Identity = 54/149 (36.24%), Postives = 81/149 (54.36%), Query Frame = 2
Query:  179 QELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYFXXXXXXXXXXXXXXQDWKNMKVISENKGGLSDEIPHLVYISREKRPKHPHHYKAGAMNVLTATC 625
            ++ P +D+F+ TAD   EPP++ VNT LS++A +YP  K++ YVSDD  S L F++L+EA+KF+K W+PFCKK NVQ R+P  YF                       S      SDE  +L  +  + + +  H  ++G +     TC
Sbjct:   96 EDFPKLDVFICTADPYKEPPMMVVNTALSVMAYEYPSDKISVYVSDDGGSSLTFFALIEAAKFSKQWLPFCKKNNVQDRSPEVYF-----------------------SSESHSRSDEAENLKMMYEDMKSRVEHVVESGKVETAFITC 221          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CSLF4_ORYSJ (Mixed-linked glucan synthase 4 OS=Oryza sativa subsp. japonica GN=CSLF4 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.497e-21
Identity = 47/84 (55.95%), Postives = 65/84 (77.38%), Query Frame = 2
Query:  182 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 433
            ELP VD+FVTT D   EP + TVN++LS+LA DYPV + ACY+SDD  + +++ ++VE +KFA+LWVPFC+K+ V+ RAP  YF
Sbjct:  174 ELPGVDVFVTTVDPVDEPILYTVNSILSILAADYPVDRYACYLSDDGGTLVHYEAMVEVAKFAELWVPFCRKHCVEPRAPESYF 257          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CSLF2_ORYSJ (Mixed-linked glucan synthase 2 OS=Oryza sativa subsp. japonica GN=CSLF2 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.261e-21
Identity = 46/84 (54.76%), Postives = 65/84 (77.38%), Query Frame = 2
Query:  182 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 433
            +LP VD+FVTT D   EP + TVNT+LS+LA DYPV + ACY+SDD  + +++ ++VE +KFA+LWVPFC+K+ V+ R+P  YF
Sbjct:  168 DLPGVDVFVTTVDPVDEPILYTVNTILSILAADYPVDRYACYLSDDGGTLVHYEAMVEVAKFAELWVPFCRKHCVEPRSPENYF 251          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CSLF1_ORYSJ (Putative mixed-linked glucan synthase 1 OS=Oryza sativa subsp. japonica GN=CSFL1 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.261e-21
Identity = 46/84 (54.76%), Postives = 65/84 (77.38%), Query Frame = 2
Query:  182 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 433
            +LP VD+FVTT D   EP + TVNT+LS+LA DYPV + ACY+SDD  + +++ ++VE +KFA+LWVPFC+K+ V+ R+P  YF
Sbjct:  138 DLPGVDVFVTTVDPVDEPILYTVNTILSILAADYPVDRYACYLSDDGGTLVHYEAMVEVAKFAELWVPFCRKHCVEPRSPENYF 221          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CSLG3_ARATH (Cellulose synthase-like protein G3 OS=Arabidopsis thaliana GN=CSLG3 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.606e-20
Identity = 44/85 (51.76%), Postives = 63/85 (74.12%), Query Frame = 2
Query:  179 QELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 433
            ++ P +D+F+ TAD   EPP++ VNT LS++A +YP  K++ YVSDD  S L  ++L+EA+KF+K W+PFCKK NVQ R+P  YF
Sbjct:  115 EDFPKLDVFICTADPYKEPPMMVVNTALSVMAYEYPSDKISVYVSDDGGSSLTLFALMEAAKFSKHWLPFCKKNNVQDRSPEVYF 199          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CSLF8_ORYSJ (Probable mixed-linked glucan synthase 8 OS=Oryza sativa subsp. japonica GN=CSFL8 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.150e-20
Identity = 44/83 (53.01%), Postives = 61/83 (73.49%), Query Frame = 2
Query:  185 LPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 433
            LP +D+F+ T D   EP I T+N +LS+LA DYPV K ACY+SDD  S +++  L+E +KFA LWVPFC+K++++ RAP  YF
Sbjct:  169 LPGLDVFINTVDPINEPMIYTMNAILSILAADYPVDKHACYLSDDGGSIIHYDGLLETAKFAALWVPFCRKHSIEPRAPESYF 251          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSJ (Cellulose synthase-like protein D5 OS=Oryza sativa subsp. japonica GN=CSLD5 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.150e-20
Identity = 43/84 (51.19%), Postives = 62/84 (73.81%), Query Frame = 2
Query:  182 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 433
            +LP +D+F++TAD   EP ++T NT+LS+LA +YPV KL  Y+SDD  + L F S+ EA  FAK+WVPFC+K++++ R P  YF
Sbjct:  235 DLPGLDVFISTADPYKEPTLVTANTLLSILATEYPVEKLFVYISDDGGALLTFESMAEACAFAKVWVPFCRKHSIEPRNPDSYF 318          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSI (Putative cellulose synthase-like protein D5 OS=Oryza sativa subsp. indica GN=CSLD5 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.150e-20
Identity = 43/84 (51.19%), Postives = 62/84 (73.81%), Query Frame = 2
Query:  182 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 433
            +LP +D+F++TAD   EP ++T NT+LS+LA +YPV KL  Y+SDD  + L F S+ EA  FAK+WVPFC+K++++ R P  YF
Sbjct:  235 DLPGLDVFISTADPYKEPTLVTANTLLSILATEYPVEKLFVYISDDGGALLTFESMAEACAFAKVWVPFCRKHSIEPRNPDSYF 318          
The following BLAST results are available for this feature:
BLAST of CX295096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CSLE1_ORYSJ2.829e-2254.12Cellulose synthase-like protein E1 OS=Oryza sativa... [more]
CSLF7_ORYSJ1.121e-2146.02Probable mixed-linked glucan synthase 7 OS=Oryza s... [more]
CSLG1_ARATH1.912e-2136.24Cellulose synthase-like protein G1 OS=Arabidopsis ... [more]
CSLF4_ORYSJ2.497e-2155.95Mixed-linked glucan synthase 4 OS=Oryza sativa sub... [more]
CSLF2_ORYSJ3.261e-2154.76Mixed-linked glucan synthase 2 OS=Oryza sativa sub... [more]
CSLF1_ORYSJ3.261e-2154.76Putative mixed-linked glucan synthase 1 OS=Oryza s... [more]
CSLG3_ARATH3.606e-2051.76Cellulose synthase-like protein G3 OS=Arabidopsis ... [more]
CSLF8_ORYSJ6.150e-2053.01Probable mixed-linked glucan synthase 8 OS=Oryza s... [more]
CSLD5_ORYSJ6.150e-2051.19Cellulose synthase-like protein D5 OS=Oryza sativa... [more]
CSLD5_ORYSI6.150e-2051.19Putative cellulose synthase-like protein D5 OS=Ory... [more]

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Properties
Property NameValue
Genbank descriptionC05068E09SK DroRLeaf1 Citrus clementina cDNA clone C05068E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295096 ID=CX295096; Name=CX295096; organism=Citrus clementina; type=EST; length=725bp
AGGGTCACTGCAAGTGGACTCCTTTTACCTACAAAACATATCCCCAACGT
CTCCAAGAAAGGTAACAAATCAAATAACGTTAGCATTAATAATTTCCGCA
TCATTTGCAATTGTCTTTGTCATTTTGCAAGTTACTACACACACACACAC
ACACACATGTGTACGACTCAACAGGATACAGGAGCTGCCCCCAGTGGACA
TGTTTGTGACAACTGCTGATGCTGAACTCGAGCCGCCAATCATCACTGTA
AACACAGTGCTGTCTTTGTTGGCAGTTGATTATCCAGTTCACAAGCTCGC
TTGCTATGTTTCTGATGATGCCTGCTCACCTCTCAATTTCTACTCTCTTG
TTGAAGCTTCTAAATTCGCTAAGCTTTGGGTTCCATTCTGTAAAAAGTAT
AATGTTCAAATTAGAGCTCCCTTTAGATACTTCCCAGATAGTGAGCCGTC
CGATTCCAGTTCAGGGGAACTCCTGCAAGACTGGAAAAACATGAAGGTTA
TATCGGAGAACAAAGGAGGTCTCTCAGATGAGATACCACATTTAGTTTAC
ATATCAAGAGAGAAAAGGCCAAAGCATCCCCATCACTACAAAGCAGGGGC
CATGAATGTATTGACTGCGACATGTATGCCAACAATCCAGAGATTGTTCT
TCAAGCTATGTGTTTGCATCTGGGCTCCAAGAACGAAAACGAATTTGCGT
TTATTCAATCTCCACAATATTTCTA
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