CX295103

Overview
NameCX295103
Unique NameCX295103
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295103 vs. ExPASy Swiss-Prot
Match: GLTB_ECOLI (Glutamate synthase [NADPH] large chain OS=Escherichia coli (strain K12) GN=gltB PE=1 SV=2)

HSP 1 Score: 313.153 bits (801), Expect = 8.911e-85
Identity = 148/234 (63.25%), Postives = 189/234 (80.77%), Query Frame = 1
Query:    4 LEIKIAQGAKPGEGGQLPGKKVSAYIARLRNSKPGVPLISPPPHHDIYSIEDLAQLIYDLHQVNPKAKVSVKLVGEAGIGTVASGVAKGNADIIQISGHDGGTGASPISSIKHAGGPWELGLTETHQTLIANGLRERVILRVDGGFKSGVDVLMAAVMGADEYGFGSVAMIATGCVMARICHTNNCPVGVASQREELRA-RFPGVPGDLVNFFLYVAEEVRGMLAQLGYAKLDD 702
            ++IK+AQGAKPGEGGQLPG KV+ YIA+LR S PGV LISPPPHHDIYSIEDLAQLI+DL QVNPKA +SVKLV E G+GT+A+GVAK  AD+I I+G+DGGTGASP+SS+K+AG PWELGL ET Q L+ANGLR ++ L+VDGG K+GVD++ AA++GA+ +GFG+  M+A GC   RICH NNC  GVA+Q ++LR   + G+P  + N+F ++A E R ++AQLG  +L D
Sbjct:  959 IQIKVAQGAKPGEGGQLPGDKVTPYIAKLRYSVPGVTLISPPPHHDIYSIEDLAQLIFDLKQVNPKAMISVKLVSEPGVGTIATGVAKAYADLITIAGYDGGTGASPLSSVKYAGCPWELGLVETQQALVANGLRHKIRLQVDGGLKTGVDIIKAAILGAESFGFGTGPMVALGCKYLRICHLNNCATGVATQDDKLRKNHYHGLPFKVTNYFEFIARETRELMAQLGVTRLVD 1192          
BLAST of CX295103 vs. ExPASy Swiss-Prot
Match: GLTB_SYNY3 (Ferredoxin-dependent glutamate synthase 1 OS=Synechocystis sp. (strain PCC 6803) GN=gltB PE=1 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 9.853e-84
Identity = 139/234 (59.40%), Postives = 189/234 (80.77%), Query Frame = 1
Query:    1 QLEIKIAQGAKPGEGGQLPGKKVSAYIARLRNSKPGVPLISPPPHHDIYSIEDLAQLIYDLHQVNPKAKVSVKLVGEAGIGTVASGVAKGNADIIQISGHDGGTGASPISSIKHAGGPWELGLTETHQTLIANGLRERVILRVDGGFKSGVDVLMAAVMGADEYGFGSVAMIATGCVMARICHTNNCPVGVASQREELRARFPGVPGDLVNFFLYVAEEVRGMLAQLGYAKLDD 702
            +++IK+AQGAKPGEGGQLPGKKV  +IA++R+S PGV LISPPPHHDIYSIEDLA+LI+DL   N +A+++VKLV E G+GT+A+GVAK +AD++ +SG+DGGTGASP +SIKHAG PWELGL ETHQTL+ N LR R+++  DG  K+G DV +AA++GA+E+GF +  +++ GC+M R CH N CPVG+A+Q  ELRA+F G P   VNF  ++A E+R ++AQLG+  +++
Sbjct:  975 EIQIKMAQGAKPGEGGQLPGKKVYPWIAKVRHSTPGVGLISPPPHHDIYSIEDLAELIHDLKNANREARINVKLVSEVGVGTIAAGVAKAHADVVLVSGYDGGTGASPQTSIKHAGLPWELGLAETHQTLVLNNLRSRIVVETDGQMKTGRDVAIAALLGAEEFGFSTAPLVSLGCIMMRACHLNTCPVGIATQNPELRAKFTGDPAHAVNFMTFIATELREVMAQLGFRTINE 1208          
BLAST of CX295103 vs. ExPASy Swiss-Prot
Match: GLTA_BACSU (Glutamate synthase [NADPH] large chain OS=Bacillus subtilis GN=gltA PE=2 SV=3)

HSP 1 Score: 307.76 bits (787), Expect = 3.744e-83
Identity = 145/234 (61.97%), Postives = 183/234 (78.21%), Query Frame = 1
Query:    1 QLEIKIAQGAKPGEGGQLPGKKVSAYIARLRNSKPGVPLISPPPHHDIYSIEDLAQLIYDLHQVNPKAKVSVKLVGEAGIGTVASGVAKGNADIIQISGHDGGTGASPISSIKHAGGPWELGLTETHQTLIANGLRERVILRVDGGFKSGVDVLMAAVMGADEYGFGSVAMIATGCVMARICHTNNCPVGVASQREELRARFPGVPGDLVNFFLYVAEEVRGMLAQLGYAKLDD 702
            +L+IK+AQGAKPGEGGQLPG KV  ++A +R S PGV LISPPPHHDIYSIEDLAQLI+DL   N  A++SVKLV +AG+GT+A+GVAK  AD+I ISG+DGGTGASP +SIKH G PWELGL E HQTL+ NGLR+RV+L  DG   +G DV+MAA++GA+E+GF +  ++  GCVM R CH + CPVGVA+Q  ELR +F G P  +VN+ L++AEEVR  +A LG+   D+
Sbjct:  938 ELQIKMAQGAKPGEGGQLPGNKVYPWVADVRGSTPGVGLISPPPHHDIYSIEDLAQLIHDLKNANRDARISVKLVSKAGVGTIAAGVAKATADVIVISGYDGGTGASPKTSIKHTGLPWELGLAEAHQTLMLNGLRDRVVLETDGKLMTGRDVVMAALLGAEEFGFATAPLVVLGCVMMRACHLDTCPVGVATQNPELRKKFMGDPDHIVNYMLFIAEEVREYMAALGFKTFDE 1171          
BLAST of CX295103 vs. ExPASy Swiss-Prot
Match: GLT1_SCHPO (Putative glutamate synthase [NADPH] OS=Schizosaccharomyces pombe GN=SPAPB1E7.07 PE=2 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 4.140e-82
Identity = 144/234 (61.54%), Postives = 184/234 (78.63%), Query Frame = 1
Query:    1 QLEIKIAQGAKPGEGGQLPGKKVSAYIARLRNSKPGVPLISPPPHHDIYSIEDLAQLIYDLHQVNPKAKVSVKLVGEAGIGTVASGVAKGNADIIQISGHDGGTGASPISSIKHAGGPWELGLTETHQTLIANGLRERVILRVDGGFKSGVDVLMAAVMGADEYGFGSVAMIATGCVMARICHTNNCPVGVASQREELRARFPGVPGDLVNFFLYVAEEVRGMLAQLGYAKLDD 702
            +L+IK+AQGAKPGEGG+LPG KVS  IA+ R+S  GV LISPPPHHDIYSIEDL QLIYD+   NP+A+VSVKLV E G+G VASGVAK  AD I +SGHDGGTGAS  + IK+AG PWELG+ ETHQTL+ N LR RV+++ DG  ++G DV +A ++GA+E+GF +  +IA GC+M R CH N CPVG+A+Q  ELR +F G P  +VNFF YVAEE+RG++A+LG+  +++
Sbjct: 1017 ELQIKMAQGAKPGEGGELPGNKVSESIAKTRHSTAGVGLISPPPHHDIYSIEDLKQLIYDMKSANPRARVSVKLVSEVGVGIVASGVAKAKADHILVSGHDGGTGASRWTGIKYAGLPWELGVAETHQTLVLNDLRGRVVIQTDGQIRTGRDVAIACLLGAEEWGFATTPLIALGCIMMRKCHLNTCPVGIATQDPELRKKFEGQPEHVVNFFYYVAEELRGIMAKLGFRTINE 1250          
BLAST of CX295103 vs. ExPASy Swiss-Prot
Match: GLSN_MEDSA (Glutamate synthase [NADH], amyloplastic OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.472e-79
Identity = 143/234 (61.11%), Postives = 179/234 (76.50%), Query Frame = 1
Query:    1 QLEIKIAQGAKPGEGGQLPGKKVSAYIARLRNSKPGVPLISPPPHHDIYSIEDLAQLIYDLHQVNPKAKVSVKLVGEAGIGTVASGVAKGNADIIQISGHDGGTGASPISSIKHAGGPWELGLTETHQTLIANGLRERVILRVDGGFKSGVDVLMAAVMGADEYGFGSVAMIATGCVMARICHTNNCPVGVASQREELRARFPGVPGDLVNFFLYVAEEVRGMLAQLGYAKLDD 702
            +L+IK+AQGAKPGEGG+LPG KV   IA  RNS  GV LISPPPHHDIYSIEDLAQLI+DL   NP A++SVKLV EAG+G +ASGV KG+A+ + ISGHDGGTGAS  + IK AG PWELGL ETHQTL+AN LR R  L+ DG  K+G DV +AA++GA+EYGF +  +I  GC+M R CH N CPVG+A+Q   LR +F G P  ++NFF  VAEE+R +++QLG+  +++
Sbjct: 1071 ELQIKMAQGAKPGEGGELPGHKVIGDIAITRNSTAGVGLISPPPHHDIYSIEDLAQLIHDLKNANPAARISVKLVSEAGVGVIASGVVKGHAEHVLISGHDGGTGASRWTGIKSAGLPWELGLAETHQTLVANDLRGRTTLQTDGQLKTGRDVAIAALLGAEEYGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMVAEEMREIMSQLGFRTVNE 1304          
BLAST of CX295103 vs. ExPASy Swiss-Prot
Match: GLT1_YEAST (Glutamate synthase [NADH] OS=Saccharomyces cerevisiae GN=GLT1 PE=1 SV=2)

HSP 1 Score: 283.493 bits (724), Expect = 7.562e-76
Identity = 133/234 (56.84%), Postives = 178/234 (76.07%), Query Frame = 1
Query:    1 QLEIKIAQGAKPGEGGQLPGKKVSAYIARLRNSKPGVPLISPPPHHDIYSIEDLAQLIYDLHQVNPKAKVSVKLVGEAGIGTVASGVAKGNADIIQISGHDGGTGASPISSIKHAGGPWELGLTETHQTLIANGLRERVILRVDGGFKSGVDVLMAAVMGADEYGFGSVAMIATGCVMARICHTNNCPVGVASQREELRARFPGVPGDLVNFFLYVAEEVRGMLAQLGYAKLDD 702
            +++IKIAQGAKPGEGG+LP  KVS  IA+ R+S P V LISPPPHHDIYSIEDL QLIYDL   NP+A +SVKLV E G+G VASGVAK  AD I +SGHDGGTGA+  +S+K+AG PWELGL ETHQTL+ N LR  V+++ DG  ++G D+ +A ++GA+ +   +V +IA GCVM R CH N+C VG+A+Q   LR++F G P  ++NFF Y+ +++R ++A+LG+  +D+
Sbjct: 1010 EIQIKIAQGAKPGEGGELPAHKVSKDIAKTRHSTPNVGLISPPPHHDIYSIEDLKQLIYDLKCANPRAGISVKLVSEVGVGIVASGVAKAKADHILVSGHDGGTGAARWTSVKYAGLPWELGLAETHQTLVLNDLRRNVVVQTDGQLRTGFDIAVAVLLGAESFTLATVPLIAMGCVMLRRCHLNSCAVGIATQDPYLRSKFKGQPEHVINFFYYLIQDLRQIMAKLGFRTIDE 1243          
BLAST of CX295103 vs. ExPASy Swiss-Prot
Match: GLUS_METJA (Glutamate synthase OS=Methanocaldococcus jannaschii GN=MJ1351 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.140e-39
Identity = 94/235 (40.00%), Postives = 125/235 (53.19%), Query Frame = 1
Query:    4 LEIKIAQGAKPGEGGQLPGKKVSAYIARLRNSKPGVPLISPPPHHDIYSIEDLAQLIYDLHQVNP-KAKVSVKLVGEAGIGTVASGVAKGNADIIQISGHDGGTGASPISSIKHAGGPWELGLTETHQTLIANGLRERVILRVDGGFKSGVDVLMAAVMGADEYGFGSVAMIATGCVMARICHTNNCPVGVASQREELRARFPGVPG--DLVNFFLYVAEEVRGMLAQLGYAKLD 699
            +EIKI QGAKPG GG LPG+KV+A I+  R    G   ISP PHHDIYSIEDLAQL+  L +    K  V VK+        +A G+A  +AD + I G+ GGTGA+P     H G P E+ +    Q L   GLR  + +   GG +   DV  A  +GAD    G+ AM+A GC +   C+T  C  G+A+QR EL  R     G   + N       E++ +L   G   ++
Sbjct:  247 IEIKIGQGAKPGIGGHLPGEKVTAEISATRMIPEGSDAISPAPHHDIYSIEDLAQLVRSLKEATRWKKPVFVKIAAVHNAPAIAVGIATSDADAVVIDGYKGGTGAAPKVFRDHVGIPIEMAIAAVDQRLREEGLRNEISIIASGGIRCSADVFKAIALGADAVYIGTAAMVALGCRVCGRCYTGLCAWGIATQRPELVKRLDPEVGARRVANLIKAWTHEIKELLGAAGINSIE 481          
BLAST of CX295103 vs. ExPASy Swiss-Prot
Match: GLXD_RHIME (Glutamate synthase large subunit-like protein OS=Rhizobium meliloti GN=glxD PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.981e-19
Identity = 59/174 (33.91%), Postives = 86/174 (49.43%), Query Frame = 1
Query:    4 LEIKIAQGAKPGEGGQLPGKKVSAYIARLRNSKPGVPLISPPPHHDIYSIEDLAQLIYDLHQVNPKAKVSVKLVGEAGIGTVASGVAKGNADIIQISGHDGGTGASPISSIKHAGGPWELGLTETHQTLIANGLRERVILRVDGGFKSGVDVLMAAVMGADEYGFGSVAMIATG 525
            +E+ + QGAKPG GG L G+K+S  +A +RN   G+   S   H D    +DL   I +L ++    K     VG A      +   K  AD++ + G  GGT A+    I++ G P    +    Q L   G+  +V L V GG +SG DV  A  +GAD    G+ A++A G
Sbjct:  159 IEVVVGQGAKPGGGGMLLGQKISDRVANMRNLPKGIDQRSACRHPDWTGPDDLEIKILELREITDWEKPIYVKVGGARPYYDTALAVKAGADVVVLDGMQGGTAATQDVFIENVGMPTLACIRPAVQALQDLGMHRKVQLVVSGGIRSGADVAKALALGADAVAIGTAALVAIG 332          
BLAST of CX295103 vs. ExPASy Swiss-Prot
Match: YERD_BACSU (Uncharacterized membrane protein yerD OS=Bacillus subtilis GN=yerD PE=4 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.506e-19
Identity = 66/201 (32.84%), Postives = 97/201 (48.26%), Query Frame = 1
Query:    7 EIKIAQGAKPGEGGQLPGKKVSAYIARLRNSKPGVPLISPPPHHDIYSIEDLAQLIYDLHQVNPKAKVSVKLVG--EAGIGTVASGVAKG--NADIIQISGHDGGTGASPISSIKHAGGPWELGLTETHQTLIANGLRERVILRVDGGFKSGVDVLMAAVMGADEYGFGSVAMIATGCVMARICHTNNCPVGVASQREELR 597
            E+K+AQGAK   GG + G KVS  +A +RN +PG  + SP   ++  +  ++   I  L  V  K  V +KLV      +  + S + K   + D I I G +GGTGAS        G P    L      L   GLR ++ +   G   +   + +A  +GAD        M + GC+ A +CHTN CP GVA+   +L+
Sbjct:  263 ELKLAQGAKT-RGGHVDGAKVSEEVADIRNVEPGKSIDSPNRFYEFSNPPEMLDFIEKLRDVGQKP-VGIKLVAGHPEELHELFSHMQKSGKHPDFITIDGSEGGTGASFYELADTVGLPIMTALPIVDTLLKQYGLRSQLKIFASGKLLTPDKIAVALALGADFVNIARGMMFSVGCIRALVCHTNTCPAGVATTDPKLQ 461          
The following BLAST results are available for this feature:
BLAST of CX295103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
GLTB_ECOLI8.911e-8563.25Glutamate synthase [NADPH] large chain OS=Escheric... [more]
GLTB_SYNY39.853e-8459.40Ferredoxin-dependent glutamate synthase 1 OS=Synec... [more]
GLTA_BACSU3.744e-8361.97Glutamate synthase [NADPH] large chain OS=Bacillus... [more]
GLT1_SCHPO4.140e-8261.54Putative glutamate synthase [NADPH] OS=Schizosacch... [more]
GLSN_MEDSA1.472e-7961.11Glutamate synthase [NADH], amyloplastic OS=Medicag... [more]
GLT1_YEAST7.562e-7656.84Glutamate synthase [NADH] OS=Saccharomyces cerevis... [more]
GLUS_METJA1.140e-3940.00Glutamate synthase OS=Methanocaldococcus jannaschi... [more]
GLXD_RHIME4.981e-1933.91Glutamate synthase large subunit-like protein OS=R... [more]
YERD_BACSU6.506e-1932.84Uncharacterized membrane protein yerD OS=Bacillus ... [more]

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Properties
Property NameValue
Genbank descriptionC05068F04SK DroRLeaf1 Citrus clementina cDNA clone C05068F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295103 ID=CX295103; Name=CX295103; organism=Citrus clementina; type=EST; length=704bp
CAGCTGGAAATCAAAATTGCACAAGGTGCAAAGCCAGGGGAAGGAGGCCA
GTTGCCTGGGAAAAAAGTTAGTGCATACATTGCAAGGTTGAGAAATTCTA
AACCTGGTGTTCCACTTATATCTCCACCTCCGCATCACGACATTTATTCG
ATTGAGGATCTTGCCCAGTTGATCTATGACCTTCATCAGGTTAACCCTAA
AGCTAAGGTGTCTGTAAAGCTTGTGGGAGAAGCTGGAATAGGAACAGTTG
CTTCTGGGGTTGCAAAGGGTAATGCTGATATTATACAGATATCTGGGCAT
GACGGTGGAACTGGAGCCAGCCCTATTAGTTCAATAAAGCATGCTGGTGG
TCCTTGGGAACTTGGACTTACAGAAACGCATCAAACTCTCATTGCAAATG
GACTGAGAGAAAGAGTAATTCTCAGAGTTGATGGCGGCTTCAAAAGCGGA
GTTGATGTCTTAATGGCTGCAGTAATGGGTGCTGATGAATATGGATTTGG
TTCTGTGGCAATGATTGCTACTGGATGTGTTATGGCCCGCATTTGCCATA
CAAACAATTGCCCAGTTGGGGTTGCCAGTCAAAGAGAAGAACTGCGTGCA
CGATTTCCTGGTGTGCCTGGTGATCTTGTTAATTTTTTCCTTTATGTAGC
TGAGGAGGTTAGAGGCATGTTGGCACAACTGGGTTATGCGAAGTTGGATG
ATGT
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