CX295113

Overview
NameCX295113
Unique NameCX295113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295113_ssr431 microsatellite CX295113_ssr431:431..440. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig612 contig Ccv1_Contig612:1..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295113 vs. ExPASy Swiss-Prot
Match: P2C03_ARATH (Protein phosphatase 2C 3 OS=Arabidopsis thaliana GN=AIP1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 42/60 (70.00%), Postives = 47/60 (78.33%), Query Frame = 1
Query:    7 AEGGDSRAVLSRGGVVVPLSVDHKPDRHDELTRVEAAGGRVINWNGPRILGVLATSRSIG 186
            A  GDSRAVL R G  VPLS DHKPDR DEL R++ AGGRVI W+G R+LGVLA SR+IG
Sbjct:  249 ANCGDSRAVLCRNGKAVPLSTDHKPDRPDELDRIQEAGGRVIYWDGARVLGVLAMSRAIG 308          

HSP 2 Score: 82.4185 bits (202), Expect = 2.558e-15
Identity = 35/53 (66.04%), Postives = 46/53 (86.79%), Query Frame = 2
Query:  512 VGDQYLKPFVISKPDVMVTERSDRDEFLILASDGLWDVVSNEAACQVVRRCFS 670
            +GD YLKP+V S+P+V VT+R++ DEFLILA+DGLWDVV+NEAAC +VR C +
Sbjct:  307 IGDNYLKPYVTSEPEVTVTDRTEEDEFLILATDGLWDVVTNEAACTMVRMCLN 359          
BLAST of CX295113 vs. ExPASy Swiss-Prot
Match: P2C77_ARATH (Protein phosphatase 2C 77 OS=Arabidopsis thaliana GN=ABI2 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 42/60 (70.00%), Postives = 46/60 (76.67%), Query Frame = 1
Query:    7 AEGGDSRAVLSRGGVVVPLSVDHKPDRHDELTRVEAAGGRVINWNGPRILGVLATSRSIG 186
            A  GDSRAVL RG   + LSVDHKPDR DE  R+EAAGG+VI WNG R+ GVLA SRSIG
Sbjct:  247 ANCGDSRAVLCRGKTPLALSVDHKPDRDDEAARIEAAGGKVIRWNGARVFGVLAMSRSIG 306          
BLAST of CX295113 vs. ExPASy Swiss-Prot
Match: P2C06_ORYSJ (Probable protein phosphatase 2C 6 OS=Oryza sativa subsp. japonica GN=Os01g0583100 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 42/60 (70.00%), Postives = 46/60 (76.67%), Query Frame = 1
Query:    7 AEGGDSRAVLSRGGVVVPLSVDHKPDRHDELTRVEAAGGRVINWNGPRILGVLATSRSIG 186
            A  GDSRAVL RG   VPLSVDHKP+R DE  R+EA GG+VI WNG R+ GVLA SRSIG
Sbjct:  296 ANCGDSRAVLCRGKQPVPLSVDHKPNREDEYARIEAEGGKVIQWNGYRVFGVLAMSRSIG 355          
BLAST of CX295113 vs. ExPASy Swiss-Prot
Match: P2C53_ORYSJ (Probable protein phosphatase 2C 53 OS=Oryza sativa subsp. japonica GN=Os05g0592800 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.788e-16
Identity = 41/60 (68.33%), Postives = 47/60 (78.33%), Query Frame = 1
Query:    7 AEGGDSRAVLSRGGVVVPLSVDHKPDRHDELTRVEAAGGRVINWNGPRILGVLATSRSIG 186
            A  GDSRAVL RG   +PLS+DHKP+R DE  R+EA GG+VI WNG R+LGVLA SRSIG
Sbjct:  272 ANCGDSRAVLCRGKQPLPLSLDHKPNREDEYARIEALGGKVIQWNGYRVLGVLAMSRSIG 331          
BLAST of CX295113 vs. ExPASy Swiss-Prot
Match: P2C16_ARATH (Protein phosphatase 2C 16 OS=Arabidopsis thaliana GN=HAB1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.866e-16
Identity = 40/57 (70.18%), Postives = 44/57 (77.19%), Query Frame = 1
Query:   16 GDSRAVLSRGGVVVPLSVDHKPDRHDELTRVEAAGGRVINWNGPRILGVLATSRSIG 186
            GDSRAVL RG   +PLSVDHKPDR DE  R+E AGG+VI W G R+ GVLA SRSIG
Sbjct:  345 GDSRAVLFRGKEAMPLSVDHKPDREDEYARIENAGGKVIQWQGARVFGVLAMSRSIG 401          

HSP 2 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 33/63 (52.38%), Postives = 44/63 (69.84%), Query Frame = 2
Query:  512 VGDQYLKPFVISKPDVMVTERSDRDEFLILASDGLWDVVSNEAACQVVRR--CFSGRINGHPP 694
            +GD+YLKP+VI +P+V    RS  DE LILASDGLWDV++N+  C++ RR      + NG PP
Sbjct:  400 IGDRYLKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRILMWHKKNGAPP 462          
BLAST of CX295113 vs. ExPASy Swiss-Prot
Match: P2C07_ARATH (Protein phosphatase 2C 7 OS=Arabidopsis thaliana GN=HAB2 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.580e-15
Identity = 40/57 (70.18%), Postives = 44/57 (77.19%), Query Frame = 1
Query:   16 GDSRAVLSRGGVVVPLSVDHKPDRHDELTRVEAAGGRVINWNGPRILGVLATSRSIG 186
            GDSRAVL RG   +PLSVDHKPDR DE  R+E AGG+VI W G R+ GVLA SRSIG
Sbjct:  345 GDSRAVLLRGKDSMPLSVDHKPDREDEYARIEKAGGKVIQWQGARVSGVLAMSRSIG 401          

HSP 2 Score: 67.781 bits (164), Expect = 6.521e-11
Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = 2
Query:  512 VGDQYLKPFVISKPDVMVTERSDRDEFLILASDGLWDVVSNEAACQVVRR 661
            +GDQYL+PFVI  P+V    R+  DE LILASDGLWDV+SN+ AC   RR
Sbjct:  400 IGDQYLEPFVIPDPEVTFMPRAREDECLILASDGLWDVMSNQEACDFARR 449          
BLAST of CX295113 vs. ExPASy Swiss-Prot
Match: P2C75_ARATH (Probable protein phosphatase 2C 75 OS=Arabidopsis thaliana GN=AHG1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.280e-14
Identity = 39/60 (65.00%), Postives = 47/60 (78.33%), Query Frame = 1
Query:    7 AEGGDSRAVLSRGGVVVPLSVDHKPDRHDELTRVEAAGGRVINWNGPRILGVLATSRSIG 186
            A  GDSRAVL R G+ +PLS DHKPDR DE  R+EAAGGRV+  +G R+ G+LATSR+IG
Sbjct:  247 ANTGDSRAVLCRNGMAIPLSNDHKPDRPDERARIEAAGGRVLVVDGARVEGILATSRAIG 306          
BLAST of CX295113 vs. ExPASy Swiss-Prot
Match: P2C50_ORYSJ (Probable protein phosphatase 2C 50 OS=Oryza sativa subsp. japonica GN=Os05g0537400 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.672e-14
Identity = 39/60 (65.00%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    7 AEGGDSRAVLSRGGVVVPLSVDHKPDRHDELTRVEAAGGRVINWNGPRILGVLATSRSIG 186
            A  GDSR VL RG   V LS+DHKPDR DE  R+EA GG+VI WNG R+ G+LA SRSIG
Sbjct:  216 ANCGDSRIVLCRGKEPVALSIDHKPDRKDERARIEAQGGKVIQWNGYRVSGILAMSRSIG 275          

HSP 2 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = 2
Query:  512 VGDQYLKPFVISKPDVMVTERSDRDEFLILASDGLWDVVSNEAACQVVRR 661
            +GD+YLKPFVI KP+VMV  R+  D+ LILASDGLWDVVSNE AC+V RR
Sbjct:  274 IGDRYLKPFVIPKPEVMVVPRAKDDDCLILASDGLWDVVSNEEACKVARR 323          
BLAST of CX295113 vs. ExPASy Swiss-Prot
Match: P2C37_ORYSJ (Probable protein phosphatase 2C 37 OS=Oryza sativa subsp. japonica GN=Os04g0167900 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 34/62 (54.84%), Postives = 44/62 (70.97%), Query Frame = 2
Query:  512 VGDQYLKPFVISKPDVMVTERSDRDEFLILASDGLWDVVSNEAACQVVRRCFSGRINGHPPS 697
            +GD+YLKP VI +PD+ +T R+  DE LILASDG+WDV+SNE A  V R+C     +G P S
Sbjct:  355 LGDKYLKPEVICEPDITITVRTVDDECLILASDGMWDVISNETASDVARQCLE---DGSPTS 413          
The following BLAST results are available for this feature:
BLAST of CX295113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
P2C03_ARATH1.786e-1670.00Protein phosphatase 2C 3 OS=Arabidopsis thaliana G... [more]
P2C77_ARATH2.333e-1670.00Protein phosphatase 2C 77 OS=Arabidopsis thaliana ... [more]
P2C06_ORYSJ3.980e-1670.00Probable protein phosphatase 2C 6 OS=Oryza sativa ... [more]
P2C53_ORYSJ6.788e-1668.33Probable protein phosphatase 2C 53 OS=Oryza sativa... [more]
P2C16_ARATH8.866e-1670.18Protein phosphatase 2C 16 OS=Arabidopsis thaliana ... [more]
P2C07_ARATH2.580e-1570.18Protein phosphatase 2C 7 OS=Arabidopsis thaliana G... [more]
P2C75_ARATH1.280e-1465.00Probable protein phosphatase 2C 75 OS=Arabidopsis ... [more]
P2C50_ORYSJ1.672e-1465.00Probable protein phosphatase 2C 50 OS=Oryza sativa... [more]
P2C37_ORYSJ1.314e-1154.84Probable protein phosphatase 2C 37 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionC05068G02SK DroRLeaf1 Citrus clementina cDNA clone C05068G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295113 ID=CX295113; Name=CX295113; organism=Citrus clementina; type=EST; length=705bp
GATTCGGCCGAGGGTGGGGATTCTAGGGCCGTGCTCTCTAGAGGTGGTGT
TGTTGTGCCATTGTCCGTTGATCATAAGCCTGACAGACATGATGAACTGA
CAAGAGTAGAAGCTGCTGGAGGAAGGGTCATAAACTGGAACGGCCCCCGA
ATCTTAGGAGTTCTTGCCACCTCCAGATCTATAGGTATGTAATTAAATAC
ATCCTGTGCCTAGTATCTTAGATTACATCAATTTAATAAATTCTATCAAG
AAAAGTTATACACAAATCACTCACCACTCAATTTAATGAATTGGATAGTA
ATATGATTAGCATGATGAGTACATATACATGATGTTATCTTAAGTATATT
AATTGGCTTGGATAACCGGCTAATTCTTCTTGAGCTAACTTTAGGCCCAT
AAGTTTTTATGATGAGGTTGATTTCATGGAATATATATATTTTTTAAAAT
TATTAAGAAAAGTTCTTATTAGTGCGGTCAATATAACGTGGTATTTGTAA
GTTTGAACCATGTAGGCGATCAATACTTGAAACCATTTGTGATATCAAAG
CCAGATGTGATGGTGACTGAAAGAAGCGACCGCGATGAATTCCTCATACT
TGCTAGCGATGGCTTATGGGATGTTGTATCAAATGAAGCAGCATGCCAAG
TCGTGAGGAGATGTTTCAGCGGCCGGATAAATGGGCATCCTCCGTCGACG
CCGGG
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