CX295133

Overview
NameCX295133
Unique NameCX295133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig688 contig Ccv1_Contig688:435..1131. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_AGRT5 (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=ribB PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.127e-42
Identity = 92/180 (51.11%), Postives = 118/180 (65.56%), Query Frame = 1
Query:  154 SSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            + I +AIE I +G+               +I A+   TP+ +AF++ H  G+VCV+M GE L+ LD+PLMV++  N E L TAFTV+VD   GTTTG+SA DRA TV  L S  S+P DF RPGHIFPL+    GVL R GHTEA+VDL  LAG  P+  +CEV +DDG+MARLP+L  F
Sbjct:    4 AKIEDAIEAISRGEMVIVVDDEDRENEGDIIAASDSITPQQIAFMMNHARGLVCVAMPGERLDALDIPLMVSR--NTESLKTAFTVSVDYIPGTTTGISAADRAKTVRALVSEGSRPEDFARPGHIFPLRANPEGVLGRTGHTEAAVDLCRLAGKFPSGTICEVANDDGTMARLPQLEIF 181          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_NOCFA (Riboflavin biosynthesis protein ribBA OS=Nocardia farcinica GN=ribBA PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.966e-42
Identity = 90/183 (49.18%), Postives = 120/183 (65.57%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVD--DDGSMARLPKLREF 693
            F +I  A+ DI  GK               LI AA+ ATPE +AF++++ +G +CV + GED +RL LP M A   N +K  TA+TV+VDA+ G TTG+SA DRATT+  LA  D+K  D  RPGH+ PL+ ++GGVL+R GHTEA+VDLA +AG  PA V+CE+V   D+G MAR  +LR F
Sbjct:    4 FDTIERAVADIAAGKAVVVVDDEDRENEGDLIFAAEKATPELVAFMIRYTSGYICVPLTGEDCDRLGLPPMYAT--NQDKHGTAYTVSVDAREGITTGISAADRATTMRLLADADAKADDLTRPGHVVPLRAKDGGVLRRPGHTEAAVDLARMAGLRPAGVICEIVSQKDEGHMARTEELRVF 184          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_ENTS8 (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=ribB PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.098e-42
Identity = 85/181 (46.96%), Postives = 115/181 (63.54%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            F  +  AI  +R+G+               +I AA+  T E MA  ++HG+GIVC+ +  E  ++LDLP+MV  + N     T FTVT++A HG TTGVSA DR TT+    + D+KP D +RPGH+FPL+ + GGVL R GHTEA++DL  LAGF PA VLCE+ +DDG+MAR P+   F
Sbjct:   13 FERVENAIAALREGRGVMVLDDENRENEGDMIFAAETMTVEQMALTIRHGSGIVCLCLTEERRKQLDLPMMV--ENNTSAFGTGFTVTIEAAHGVTTGVSAADRITTIRAAIADDAKPSDLHRPGHVFPLRAQPGGVLTRGGHTEATIDLVSLAGFKPAGVLCELTNDDGTMARAPECIAF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_CLONN (Riboflavin biosynthesis protein ribBA OS=Clostridium novyi (strain NT) GN=ribBA PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.188e-41
Identity = 87/181 (48.07%), Postives = 122/181 (67.40%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            F++I EAIEDI+ GK               L+MAA+  TPEA+ F+ K+  G++C+ M  E L+ LDL  MV    + ++  TAFTV++D+   TTTG+SA +RA T+     + +K  DF RPGHIFPL+ R+GGVLKRAGHTEA+VDLA LAG  PA  +CE++++DG+MAR+P L ++
Sbjct:    6 FNTIEEAIEDIKNGKMVVVVDDEDRENEGDLLMAAEKVTPEAINFMAKYARGLICMPMTEEKLKELDLYQMVINNTDTKE--TAFTVSIDSVE-TTTGISAFERALTITKAVEKGAKAKDFQRPGHIFPLRARKGGVLKRAGHTEAAVDLATLAGLTPAGTICEIMNEDGTMARVPDLMKY 183          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_YERPY (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=ribB PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.027e-41
Identity = 84/178 (47.19%), Postives = 115/178 (64.61%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            +  AI+ +R G+               ++ AA+  T E MA  ++HG+GIVC+ +  E  ++LDLP+MV    N  +  TAFTVT++A  G TTGVSA DR TT+    + ++KP D NRPGH+FPL+ + GGVL R GHTEAS+DLA LAG+ PA VLCE+ +DDGSMA  P++  F
Sbjct:   16 VERAIDALRNGRGVMVLDDESRENEGDMVFAAEAMTLEQMALTIRHGSGIVCLCITDERRQQLDLPMMVTH--NSSQFQTAFTVTIEAAEGVTTGVSAADRLTTIRKAIADNAKPADLNRPGHVFPLRGQPGGVLSRRGHTEASIDLATLAGYKPAGVLCELTNDDGSMAHAPEVIAF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_YERPS (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Yersinia pseudotuberculosis GN=ribB PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.027e-41
Identity = 84/178 (47.19%), Postives = 115/178 (64.61%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            +  AI+ +R G+               ++ AA+  T E MA  ++HG+GIVC+ +  E  ++LDLP+MV    N  +  TAFTVT++A  G TTGVSA DR TT+    + ++KP D NRPGH+FPL+ + GGVL R GHTEAS+DLA LAG+ PA VLCE+ +DDGSMA  P++  F
Sbjct:   16 VERAIDALRNGRGVMVLDDESRENEGDMVFAAEAMTLEQMALTIRHGSGIVCLCITDERRQQLDLPMMVTH--NSSQFQTAFTVTIEAAEGVTTGVSAADRLTTIRKAIADNAKPADLNRPGHVFPLRGQPGGVLSRRGHTEASIDLATLAGYKPAGVLCELTNDDGSMAHAPEVIAF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_YERPP (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Yersinia pestis (strain Pestoides F) GN=ribB PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.027e-41
Identity = 84/178 (47.19%), Postives = 115/178 (64.61%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            +  AI+ +R G+               ++ AA+  T E MA  ++HG+GIVC+ +  E  ++LDLP+MV    N  +  TAFTVT++A  G TTGVSA DR TT+    + ++KP D NRPGH+FPL+ + GGVL R GHTEAS+DLA LAG+ PA VLCE+ +DDGSMA  P++  F
Sbjct:   16 VERAIDALRNGRGVMVLDDESRENEGDMVFAAEAMTLEQMALTIRHGSGIVCLCITDERRQQLDLPMMVTH--NSSQFQTAFTVTIEAAEGVTTGVSAADRLTTIRKAIADNAKPADLNRPGHVFPLRGQPGGVLSRRGHTEASIDLATLAGYKPAGVLCELTNDDGSMAHAPEVIAF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_YERPN (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=ribB PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.027e-41
Identity = 84/178 (47.19%), Postives = 115/178 (64.61%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            +  AI+ +R G+               ++ AA+  T E MA  ++HG+GIVC+ +  E  ++LDLP+MV    N  +  TAFTVT++A  G TTGVSA DR TT+    + ++KP D NRPGH+FPL+ + GGVL R GHTEAS+DLA LAG+ PA VLCE+ +DDGSMA  P++  F
Sbjct:   16 VERAIDALRNGRGVMVLDDESRENEGDMVFAAEAMTLEQMALTIRHGSGIVCLCITDERRQQLDLPMMVTH--NSSQFQTAFTVTIEAAEGVTTGVSAADRLTTIRKAIADNAKPADLNRPGHVFPLRGQPGGVLSRRGHTEASIDLATLAGYKPAGVLCELTNDDGSMAHAPEVIAF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_YERPG (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=ribB PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.027e-41
Identity = 84/178 (47.19%), Postives = 115/178 (64.61%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            +  AI+ +R G+               ++ AA+  T E MA  ++HG+GIVC+ +  E  ++LDLP+MV    N  +  TAFTVT++A  G TTGVSA DR TT+    + ++KP D NRPGH+FPL+ + GGVL R GHTEAS+DLA LAG+ PA VLCE+ +DDGSMA  P++  F
Sbjct:   16 VERAIDALRNGRGVMVLDDESRENEGDMVFAAEAMTLEQMALTIRHGSGIVCLCITDERRQQLDLPMMVTH--NSSQFQTAFTVTIEAAEGVTTGVSAADRLTTIRKAIADNAKPADLNRPGHVFPLRGQPGGVLSRRGHTEASIDLATLAGYKPAGVLCELTNDDGSMAHAPEVIAF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_YERPE (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Yersinia pestis GN=ribB PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.027e-41
Identity = 84/178 (47.19%), Postives = 115/178 (64.61%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            +  AI+ +R G+               ++ AA+  T E MA  ++HG+GIVC+ +  E  ++LDLP+MV    N  +  TAFTVT++A  G TTGVSA DR TT+    + ++KP D NRPGH+FPL+ + GGVL R GHTEAS+DLA LAG+ PA VLCE+ +DDGSMA  P++  F
Sbjct:   16 VERAIDALRNGRGVMVLDDESRENEGDMVFAAEAMTLEQMALTIRHGSGIVCLCITDERRQQLDLPMMVTH--NSSQFQTAFTVTIEAAEGVTTGVSAADRLTTIRKAIADNAKPADLNRPGHVFPLRGQPGGVLSRRGHTEASIDLATLAGYKPAGVLCELTNDDGSMAHAPEVIAF 191          
The following BLAST results are available for this feature:
BLAST of CX295133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
RIBB_AGRT53.127e-4251.113,4-dihydroxy-2-butanone 4-phosphate synthase OS=A... [more]
RIBBA_NOCFA6.966e-4249.18Riboflavin biosynthesis protein ribBA OS=Nocardia ... [more]
RIBB_ENTS89.098e-4246.963,4-dihydroxy-2-butanone 4-phosphate synthase OS=E... [more]
RIBBA_CLONN1.188e-4148.07Riboflavin biosynthesis protein ribBA OS=Clostridi... [more]
RIBB_YERPY2.027e-4147.193,4-dihydroxy-2-butanone 4-phosphate synthase OS=Y... [more]
RIBB_YERPS2.027e-4147.193,4-dihydroxy-2-butanone 4-phosphate synthase OS=Y... [more]
RIBB_YERPP2.027e-4147.193,4-dihydroxy-2-butanone 4-phosphate synthase OS=Y... [more]
RIBB_YERPN2.027e-4147.193,4-dihydroxy-2-butanone 4-phosphate synthase OS=Y... [more]
RIBB_YERPG2.027e-4147.193,4-dihydroxy-2-butanone 4-phosphate synthase OS=Y... [more]
RIBB_YERPE2.027e-4147.193,4-dihydroxy-2-butanone 4-phosphate synthase OS=Y... [more]

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Properties
Property NameValue
Genbank descriptionC05068H10SK DroRLeaf1 Citrus clementina cDNA clone C05068H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295133 ID=CX295133; Name=CX295133; organism=Citrus clementina; type=EST; length=695bp
GAAAGTACTGGTGCTCATGATCAATTGGAGGGGATTGAGTTACAACCGGA
TGCAATAGCATTTGGAGCACTTGCACCAGATACCGCTCCCACAACTTTTG
GATTTTCCAGTGATGATAGTGAATTTGATTTGGATAGCCCTACAGAAGGT
TTTTCTTCTATCCCCGAGGCCATTGAAGACATTCGCCAAGGAAAGTTTGT
CGTGGTCGTGGATGATGAAGATAGAGAAAATGAGGGAGATCTTATAATGG
CAGCACAGCTCGCAACACCTGAAGCTATGGCATTTATTGTAAAACATGGA
ACTGGAATTGTTTGCGTGAGCATGAAGGGGGAAGATCTGGAGAGGCTGGA
TCTTCCTTTAATGGTTGCACAAAAGGAAAATGATGAGAAACTTTGTACTG
CATTCACAGTGACAGTGGATGCAAAACATGGAACAACCACAGGGGTCTCA
GCTCGTGATAGGGCAACAACTGTTTTGACTCTTGCTTCTAGGGATTCAAA
ACCTGGGGATTTCAATCGCCCGGGCCATATTTTTCCTCTGAAGTACAGAG
AGGGTGGAGTTCTGAAAAGAGCTGGTCATACAGAAGCTTCTGTTGATCTT
GCTGTGCTAGCTGGATTTGACCCTGCAGCAGTTTTGTGTGAGGTTGTGGA
TGATGATGGTTCCATGGCTAGATTACCAAAGCTTCGTGAATTTTG
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