CX295133

Overview
NameCX295133
Unique NameCX295133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIB3_SCHPO (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Schizosaccharomyces pombe GN=SPBC23E6.06c PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.226e-39
Identity = 85/175 (48.57%), Postives = 116/175 (66.29%), Query Frame = 1
Query:  154 SSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRD-SKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVV-DDDGSMAR 672
            +SI EA+ D R GKF              LI+A    T E MAF+V+H +G VCV M GE L+ L++P+MV    N++++ TA+ VT+D  +GTTTG+SA DRA T   LA+ + + P +FNRPGHI PL+ R+GGVL+R GHTEA+VDL  LAG  P   +CE+V ++DG M+R
Sbjct:    3 ASIEEAVNDFRDGKFLIVLDDETRENEGDLIIAGCKVTTEQMAFLVRHSSGYVCVPMTGERLDSLEIPMMV--DNNEDRMRTAYAVTLDYANGTTTGISAHDRALTTRQLANPEVTSPREFNRPGHIVPLRARDGGVLERDGHTEAAVDLCKLAGLPPVGAICELVREEDGLMSR 175          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_SALAR (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=ribB PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.520e-39
Identity = 81/181 (44.75%), Postives = 113/181 (62.43%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            F  +  A++ +R+G+               +I  A+  T E MA  ++HG+GIVC+ +  +  ++LDLP+MV  + N     T FTVT++A  G TTGVSA DR TTV    +  +KP D NRPGH+FPL+ + GGVL R GHTEA++DL  LAGF PA VLCE+ +D+G+MAR P+   F
Sbjct:   13 FERVELALDALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMV--QNNTSAYGTGFTVTIEAAEGVTTGVSAADRVTTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDNGTMARAPECIAF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_PECCP (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=ribB PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.520e-39
Identity = 80/178 (44.94%), Postives = 114/178 (64.04%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            +  A++ +R G+               +I +A+  T E MA  ++HG+GIVC+ +  E  ++L+LP+MV  ++N     TAFTVT++A  G TTGVSA DR TT+    + ++KP D NRPGH+FPL+ + GGVL R GHTEA+VDL  LAG  P+ VLCE+ +DDGSMA  P++  F
Sbjct:   16 VERALDALRHGRGVLVLDDEDRENEGDMIFSAENMTVEQMALTIRHGSGIVCLCLTEERRQQLELPMMV--EKNSSHYQTAFTVTIEAAEGVTTGVSAADRLTTIRAAIADNAKPSDLNRPGHVFPLRAQPGGVLTRGGHTEATVDLMTLAGLKPSGVLCELTNDDGSMAHAPEVIAF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_ERWCT (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Erwinia carotovora subsp. atroseptica GN=ribB PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.520e-39
Identity = 82/185 (44.32%), Postives = 117/185 (63.24%), Query Frame = 1
Query:  139 PTEGFSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            PTE    +  A++ +R G+               +I +A+  T E MA  ++HG+GIVC+ +  E  ++L+LP+MV  ++N     TAFTVT++A  G TTGVSA DR TT+    + +++P D NRPGH+FPL+ + GGVL R GHTEA+VDL  LAG  P+ VLCE+ +DDGSMA  P++  F
Sbjct:   12 PTE---RVERALDALRHGRGVLVLDDEDRENEGDMIFSAESMTVEQMALTIRHGSGIVCLCLTEERRQQLELPMMV--EKNSSHYQTAFTVTIEAAEGVTTGVSAADRLTTIRAAIADNARPSDLNRPGHVFPLRAQPGGVLTRGGHTEATVDLMTLAGLKPSGVLCELTNDDGSMAHAPEVIAF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_BACSK (Riboflavin biosynthesis protein ribBA OS=Bacillus clausii (strain KSM-K16) GN=ribBA PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.520e-39
Identity = 85/179 (47.49%), Postives = 113/179 (63.13%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLR 687
            F SI EAI  ++ G                 +  A+ A+PE + F+  HG G++CV +  E  ERL L  MV+   +     TAFTV+VD  H TTTG+SA +RA TV  LA  +++P DF RPGH+FPL  + GGVL+RAGHTEA+VD A L G  PA V+CEV+++DGSMAR+P+LR
Sbjct:    2 FESIDEAITQLKAGGMILVVDDEDRENEGDFLALAETASPETINFMATHGRGLICVPLTEEQAERLQLGQMVSHSTDPHG--TAFTVSVDHSH-TTTGISAFERAETVRALADANAQPSDFKRPGHVFPLVAKNGGVLRRAGHTEAAVDFAKLCGAKPAGVICEVMNEDGSMARVPELR 177          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_RHOSR (Riboflavin biosynthesis protein ribBA OS=Rhodococcus sp. (strain RHA1) GN=ribBA PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.209e-39
Identity = 89/183 (48.63%), Postives = 115/183 (62.84%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVD--DDGSMARLPKLREF 693
            F SI  A+ DI  GK               LI AA+ ATPE +AF+V++ +G +CV + G D +RL LP M A   N +K  TA+TVTVDA+ G  TG+SA DRA T+  LA   S   DF RPGH+ PL+ +EGGVL+R GHTEA+VDLA +A   PA V+CE+V   D+G MA+  +LR F
Sbjct:    4 FDSIERAVADIAAGKAVVVVDDEDRENEGDLIFAAEKATPELVAFMVRYTSGYLCVPLDGADCDRLGLPPMYAT--NQDKHGTAYTVTVDAREGIGTGISASDRAATMRLLADPSSGAQDFTRPGHVVPLRAKEGGVLRRPGHTEAAVDLARMADLRPAGVICEIVSQKDEGHMAQTDELRVF 184          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_PASMU (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Pasteurella multocida GN=ribB PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.415e-39
Identity = 83/175 (47.43%), Postives = 111/175 (63.43%), Query Frame = 1
Query:  169 AIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            AI   +QG                LI  A+  T E M  ++++G+GIVC+ +  E  ++LDLP MV +  +  K  TAFTVT++A  G +TGVSA DR TT+    + ++KP D +RPGHIFPL+   GGVLKR GHTEASVDLA LAG+  A V+CE+ +DDGSMAR P++  F
Sbjct:   19 AINAFKQGNGVLVLDDEDRENEGDLIFPAETITVEQMTMLIRYGSGIVCLCLSDEICQQLDLPPMVTENTSVNK--TAFTVTIEAAKGVSTGVSATDRVTTIRAAVADNAKPSDLSRPGHIFPLRAMTGGVLKRRGHTEASVDLARLAGYKAAGVICEITNDDGSMARAPEIVTF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_HAEIE (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Haemophilus influenzae (strain PittEE) GN=ribB PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.230e-38
Identity = 80/151 (52.98%), Postives = 106/151 (70.20%), Query Frame = 1
Query:  241 LIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            LI  A+  TPE MA ++++G+GIVC+ +  E  ++LDLP MV    +  K  TAFTVT++A  G +TGVSA DR TT+ T  + ++ P D +RPGH+FPL+   GGVL R GHTEASVDLA LAGF  A V+CE+ +DDG+MAR P + EF
Sbjct:   44 LIFPAETITPEQMAKLIRYGSGIVCLCITDERCQQLDLPSMVEHNNSVNK--TAFTVTIEAAKGVSTGVSAADRVTTIQTAIADNAVPTDLHRPGHVFPLRAANGGVLTRRGHTEASVDLARLAGFKEAGVICEITNDDGTMARTPDIVEF 192          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_DESAD (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=ribB PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.230e-38
Identity = 79/178 (44.38%), Postives = 115/178 (64.61%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            + + ++ +R+G+               LI +A+  + E MA +++  +GIVC+ +  E  E+L LP+MV  + N  +  T FTVT++A  G TTGVSA DR TTV    +  +KP D +RPGH+FPL+ REGGVL+R GHTEA+VD+  LAG +P  VLCE+ + DG+MARLP++ EF
Sbjct:   16 VEKGLQALREGRGILVTDNESRENEGDLIFSAEKLSDEQMAMMIRECSGIVCLCLTDEKTEQLGLPMMV--ESNSSRYQTGFTVTIEAAEGVTTGVSAADRVTTVKAAIADGAKPADLHRPGHVFPLRAREGGVLEREGHTEATVDMMTLAGLNPCGVLCELTNPDGTMARLPEIVEF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_PARD8 (Riboflavin biosynthesis protein ribBA OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=ribBA PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.606e-38
Identity = 88/180 (48.89%), Postives = 115/180 (63.89%), Query Frame = 1
Query:  154 SSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGT-TTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLRE 690
            ++I EAIED R+GKF               I+AA+  TPE + F++K+G G++C  +  E  + L+L + VA   N   L T FT+TVD   G  TTGVS  DRA T+L LA   +KP D  RPGHI PL+ R  GVL+RAGHTEA+VDLA LAG  PA  L E++++DG+MARLP+L E
Sbjct:    7 NTIEEAIEDFREGKFLIVVDDEDRENEGDFIIAAEKVTPEKINFMLKNGRGVLCAPITEERCQELELDMQVAN--NTSLLGTPFTITVDKLGGKCTTGVSMYDRAETILALADPKTKPSDLGRPGHINPLRARSRGVLRRAGHTEAAVDLARLAGLYPAGALIEIINEDGTMARLPQLIE 184          
The following BLAST results are available for this feature:
BLAST of CX295133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
RIB3_SCHPO4.226e-3948.573,4-dihydroxy-2-butanone 4-phosphate synthase OS=S... [more]
RIBB_SALAR5.520e-3944.753,4-dihydroxy-2-butanone 4-phosphate synthase OS=S... [more]
RIBB_PECCP5.520e-3944.943,4-dihydroxy-2-butanone 4-phosphate synthase OS=P... [more]
RIBB_ERWCT5.520e-3944.323,4-dihydroxy-2-butanone 4-phosphate synthase OS=E... [more]
RIBBA_BACSK5.520e-3947.49Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]
RIBBA_RHOSR7.209e-3948.63Riboflavin biosynthesis protein ribBA OS=Rhodococc... [more]
RIBB_PASMU9.415e-3947.433,4-dihydroxy-2-butanone 4-phosphate synthase OS=P... [more]
RIBB_HAEIE1.230e-3852.983,4-dihydroxy-2-butanone 4-phosphate synthase OS=H... [more]
RIBB_DESAD1.230e-3844.383,4-dihydroxy-2-butanone 4-phosphate synthase OS=D... [more]
RIBBA_PARD81.606e-3848.89Riboflavin biosynthesis protein ribBA OS=Parabacte... [more]

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Properties
Property NameValue
Genbank descriptionC05068H10SK DroRLeaf1 Citrus clementina cDNA clone C05068H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295133 ID=CX295133; Name=CX295133; organism=Citrus clementina; type=EST; length=695bp
GAAAGTACTGGTGCTCATGATCAATTGGAGGGGATTGAGTTACAACCGGA
TGCAATAGCATTTGGAGCACTTGCACCAGATACCGCTCCCACAACTTTTG
GATTTTCCAGTGATGATAGTGAATTTGATTTGGATAGCCCTACAGAAGGT
TTTTCTTCTATCCCCGAGGCCATTGAAGACATTCGCCAAGGAAAGTTTGT
CGTGGTCGTGGATGATGAAGATAGAGAAAATGAGGGAGATCTTATAATGG
CAGCACAGCTCGCAACACCTGAAGCTATGGCATTTATTGTAAAACATGGA
ACTGGAATTGTTTGCGTGAGCATGAAGGGGGAAGATCTGGAGAGGCTGGA
TCTTCCTTTAATGGTTGCACAAAAGGAAAATGATGAGAAACTTTGTACTG
CATTCACAGTGACAGTGGATGCAAAACATGGAACAACCACAGGGGTCTCA
GCTCGTGATAGGGCAACAACTGTTTTGACTCTTGCTTCTAGGGATTCAAA
ACCTGGGGATTTCAATCGCCCGGGCCATATTTTTCCTCTGAAGTACAGAG
AGGGTGGAGTTCTGAAAAGAGCTGGTCATACAGAAGCTTCTGTTGATCTT
GCTGTGCTAGCTGGATTTGACCCTGCAGCAGTTTTGTGTGAGGTTGTGGA
TGATGATGGTTCCATGGCTAGATTACCAAAGCTTCGTGAATTTTG
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