CX295133

Overview
NameCX295133
Unique NameCX295133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_SODGM (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Sodalis glossinidius (strain morsitans) GN=ribB PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.097e-38
Identity = 83/178 (46.63%), Postives = 110/178 (61.80%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            +  A+E +R G+               +I AAQ  T E MA  +++G+GIVC+ +  E  ++L LP+MV  + N     TAFTVT++A  G +TGVSA DR TT+      ++KP D NRPGH+FPL  + GGVL R GHTEA+VDL  LAG  PA VLCEV +DDGSMA  P++  F
Sbjct:   16 VENALESLRNGRGVLVLDDEDRENEGDMIFAAQNMTVEQMALTIRYGSGIVCLCLTEERRQQLALPMMV--ERNSSHYQTAFTVTIEAAEGVSTGVSAADRLTTIRAAIKDNAKPTDLNRPGHVFPLCAQPGGVLVRGGHTEAAVDLTTLAGLKPAGVLCEVTNDDGSMAHAPEIIAF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_HAEIG (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Haemophilus influenzae (strain PittGG) GN=ribB PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.097e-38
Identity = 80/151 (52.98%), Postives = 106/151 (70.20%), Query Frame = 1
Query:  241 LIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            LI  A+  TPE MA ++++G+GIVC+ +  E  ++LDLP MV    +  K  TAFTVT++A  G +TGVSA DR TT+ T  + ++ P D +RPGH+FPL+   GGVL R GHTEASVDLA LAGF  A V+CE+ +DDG+MAR P + EF
Sbjct:   44 LIFPAETITPEQMAKLIRYGSGIVCLCITDERCQQLDLPSMVEHNNSVNK--TAFTVTIEAAKGVSTGVSAADRVTTIQTAIADNAVPTDLHRPGHVFPLRAVNGGVLTRRGHTEASVDLARLAGFKEAGVICEITNDDGTMARTPDIVEF 192          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_SHEHH (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Shewanella halifaxensis (strain HAW-EB4) GN=ribB PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.673e-38
Identity = 83/175 (47.43%), Postives = 114/175 (65.14%), Query Frame = 1
Query:  169 AIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            A+  +RQGK               LI +A+  T E MA +++  +GIVC+ +  E +E+L LP MV+  +N+ +  TAFTV+++AK G TTGVSA DR TT+ T  + ++KP D  RPGH++PL+ R GGVL+R GHTE +VDL  LAG  P  VLCEV   DG+MARLP++ EF
Sbjct:   19 ALTALRQGKGVLVVDDEDRENEGDLIYSAETLTNEQMALLIRECSGIVCLCLTDERIEQLQLPPMVS--DNNSQYGTAFTVSIEAKQGVTTGVSAADRVTTIKTAIADNAKPDDLARPGHVYPLRARPGGVLERRGHTEGTVDLMKLAGLKPYGVLCEVTLVDGTMARLPEIIEF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_PHOLE (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Photobacterium leiognathi GN=ribB PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.970e-38
Identity = 80/180 (44.44%), Postives = 118/180 (65.56%), Query Frame = 1
Query:  154 SSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            SS  E I+DIRQG+               LI+A+++ TPEA+ F+  HG G++C+++     + L+LPLMV  + N++   T FT++++A    TTG+SA DRA TVL   + ++K  D   PGHIFPL  ++GGVL RAGHTEA  D+A LAG +P++V+ E++++DGSMAR P+L  F
Sbjct:    4 SSAKEIIDDIRQGRMVILMDDESRENEGDLIIASEMVTPEAINFMATHGRGLICLTLSKARCKTLNLPLMV--QGNNDNFSTPFTISIEAAKYVTTGISASDRAKTVLAAVAPNAKSTDIVMPGHIFPLMAQDGGVLIRAGHTEAGCDVARLAGLEPSSVIVEILNEDGSMARRPQLEIF 181          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_PELCD (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=ribB PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.970e-38
Identity = 79/175 (45.14%), Postives = 114/175 (65.14%), Query Frame = 1
Query:  169 AIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            AI+ +RQG+               LI  A+  TP  MA +++  +GIVC+ +  + L++L+LP MV+  +N     TAFT++++A+ G TTGVSA DR TT+ T  + D +P D  RPGH+FPL+ R GGVL R GHTE +VDL  +AG+ PA VLCE+ ++DG+MARLP++  F
Sbjct:   19 AIDRLRQGRGVLLVDDENRENEGDLIFPAETITPAQMAMMIRECSGIVCLCLTEDKLKQLELPQMVS--DNTSANQTAFTLSIEARQGVTTGVSAADRVTTIRTAVADDCRPDDLARPGHVFPLRARPGGVLTRRGHTEGTVDLMRMAGYKPAGVLCELTNEDGTMARLPEIITF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_HAEI8 (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Haemophilus influenzae (strain 86-028NP) GN=ribB PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.970e-38
Identity = 79/151 (52.32%), Postives = 106/151 (70.20%), Query Frame = 1
Query:  241 LIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            LI  A+  T E MA ++++G+GIVC+ +  E  ++LDLP MV    +  K  TAFTVT++A  G +TGVSA DR TT+ T  + ++ P D +RPGH+FPL+   GGVL R GHTEASVDLA LAGF  A V+CE+ +DDG+MAR P++ EF
Sbjct:   44 LIFPAETITSEQMAKLIRYGSGIVCLCITDERCQQLDLPPMVEHNNSVNK--TAFTVTIEAAKGVSTGVSAADRVTTIQTAIADNAVPTDLHRPGHVFPLRAANGGVLTRRGHTEASVDLARLAGFKEAGVICEITNDDGTMARTPEIVEF 192          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_SHEPA (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=ribB PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.041e-37
Identity = 81/175 (46.29%), Postives = 113/175 (64.57%), Query Frame = 1
Query:  169 AIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            A+  +RQGK               LI +A+  T + MA +++  +GIVC+ +  E +++L LP MV+  +N+ +  TAFTV+++AK G TTGVSA DR TT+    + D+KP D  RPGH++PL+ R GGVL+R GHTE +VDL  LAG  P  VLCEV   DG+MARLP++ EF
Sbjct:   19 ALSALRQGKGVLVVDDEDRENEGDLIYSAETLTNQQMALLIRECSGIVCLCLTDERIKQLQLPPMVS--DNNSQYGTAFTVSIEAKQGVTTGVSAADRVTTIKAAIADDAKPDDLARPGHVYPLRARPGGVLERRGHTEGTVDLMKLAGLQPFGVLCEVTLPDGTMARLPEIVEF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_BAUCH (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=ribB PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.041e-37
Identity = 80/175 (45.71%), Postives = 111/175 (63.43%), Query Frame = 1
Query:  169 AIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            A++ +R G+               +I AA+  T E MA  +++G+GI+C+ +  E  ++L+LP+MV  + N     TAFTVT++A  G TTGVSA DR TT+ T    D+ P D NRPGH+FPL  + GGVL R GHTEA++DL +LAG  PA VLCEV ++DGSMAR  ++  F
Sbjct:   19 ALQALRHGRGVLVLDNEDRENEGDMIFAAEKMTIEQMALAIRYGSGIICLCLTEERRQQLELPMMV--EHNTSHYQTAFTVTIEAAEGVTTGVSAADRITTIRTAIKNDAIPEDLNRPGHVFPLLAQPGGVLNRGGHTEAAIDLTLLAGLKPAGVLCEVTNEDGSMARALEIIAF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCVP (Riboflavin biosynthesis protein ribBA OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=ribBA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.041e-37
Identity = 86/181 (47.51%), Postives = 116/181 (64.09%), Query Frame = 1
Query:  157 SIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVD--DDGSMARLPKLREF 693
            S+  A+ DI  GK               LI AA+ ATPE +AF+V++ +G +CV + G+  +RL L  M A   N +K  TA+TVTVDAK G  TG+SA DRATT+  LA  D+   DF +PGH+ PL+ ++GGVL+R GHTEA+VDLA LAG  PA  +CE+V   D+G+MA+  +LR F
Sbjct:    6 SVERAVADIAAGKAVVVIDDEDRENEGDLIFAAEKATPELVAFMVRYTSGYLCVPLAGDICDRLGLLPMYAV--NQDKHGTAYTVTVDAKKGVGTGISAMDRATTMRLLADPDAVADDFTKPGHVVPLRAKDGGVLRRPGHTEAAVDLARLAGLQPAGAICEIVSQKDEGAMAQTDELRIF 184          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_BACTN (Riboflavin biosynthesis protein ribBA OS=Bacteroides thetaiotaomicron GN=ribBA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.041e-37
Identity = 84/176 (47.73%), Postives = 110/176 (62.50%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLR 687
            I +AI D ++GKF              LI+AA+  TPE + F++KH  G++C  +     + LDLP  V+  +N   L T FTVT+D   G +TGVSA DRA T+  LA   S P  F RPGHI PL  +E GVL+RAGHTEA++D+A LAG  PA  L E++ DDG+MARLP+LR
Sbjct:    9 IEDAIADFKEGKFVIVVDDEDRENEGDLIIAAEKITPEKVNFMLKHARGVLCAPITVSRCKELDLPHQVS--DNTSVLGTPFTVTIDKLEGCSTGVSASDRAATIQALADPASTPATFGRPGHINPLYAQEKGVLRRAGHTEATIDMARLAGLYPAGALMEIMSDDGTMARLPELR 182          
The following BLAST results are available for this feature:
BLAST of CX295133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
RIBB_SODGM2.097e-3846.633,4-dihydroxy-2-butanone 4-phosphate synthase OS=S... [more]
RIBB_HAEIG2.097e-3852.983,4-dihydroxy-2-butanone 4-phosphate synthase OS=H... [more]
RIBB_SHEHH4.673e-3847.433,4-dihydroxy-2-butanone 4-phosphate synthase OS=S... [more]
RIBB_PHOLE7.970e-3844.443,4-dihydroxy-2-butanone 4-phosphate synthase OS=P... [more]
RIBB_PELCD7.970e-3845.143,4-dihydroxy-2-butanone 4-phosphate synthase OS=P... [more]
RIBB_HAEI87.970e-3852.323,4-dihydroxy-2-butanone 4-phosphate synthase OS=H... [more]
RIBB_SHEPA1.041e-3746.293,4-dihydroxy-2-butanone 4-phosphate synthase OS=S... [more]
RIBB_BAUCH1.041e-3745.713,4-dihydroxy-2-butanone 4-phosphate synthase OS=B... [more]
RIBBA_MYCVP1.041e-3747.51Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_BACTN1.041e-3747.73Riboflavin biosynthesis protein ribBA OS=Bacteroid... [more]

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Properties
Property NameValue
Genbank descriptionC05068H10SK DroRLeaf1 Citrus clementina cDNA clone C05068H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295133 ID=CX295133; Name=CX295133; organism=Citrus clementina; type=EST; length=695bp
GAAAGTACTGGTGCTCATGATCAATTGGAGGGGATTGAGTTACAACCGGA
TGCAATAGCATTTGGAGCACTTGCACCAGATACCGCTCCCACAACTTTTG
GATTTTCCAGTGATGATAGTGAATTTGATTTGGATAGCCCTACAGAAGGT
TTTTCTTCTATCCCCGAGGCCATTGAAGACATTCGCCAAGGAAAGTTTGT
CGTGGTCGTGGATGATGAAGATAGAGAAAATGAGGGAGATCTTATAATGG
CAGCACAGCTCGCAACACCTGAAGCTATGGCATTTATTGTAAAACATGGA
ACTGGAATTGTTTGCGTGAGCATGAAGGGGGAAGATCTGGAGAGGCTGGA
TCTTCCTTTAATGGTTGCACAAAAGGAAAATGATGAGAAACTTTGTACTG
CATTCACAGTGACAGTGGATGCAAAACATGGAACAACCACAGGGGTCTCA
GCTCGTGATAGGGCAACAACTGTTTTGACTCTTGCTTCTAGGGATTCAAA
ACCTGGGGATTTCAATCGCCCGGGCCATATTTTTCCTCTGAAGTACAGAG
AGGGTGGAGTTCTGAAAAGAGCTGGTCATACAGAAGCTTCTGTTGATCTT
GCTGTGCTAGCTGGATTTGACCCTGCAGCAGTTTTGTGTGAGGTTGTGGA
TGATGATGGTTCCATGGCTAGATTACCAAAGCTTCGTGAATTTTG
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