CX295133

Overview
NameCX295133
Unique NameCX295133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCMM (Riboflavin biosynthesis protein ribBA OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=ribBA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.319e-37
Identity = 87/181 (48.07%), Postives = 115/181 (63.54%), Query Frame = 1
Query:  157 SIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVD--DDGSMARLPKLREF 693
            S+  A+ DI  GK               LI AA+ ATPE +AF+V++ +G +CV + G   +RL L  M A   N +K  TA+TVTVDAK+G  TG+SA DRATT+  LA   S   DF RPGH+ PL+ ++GGVL+R GHTEA+VDLA +AG  PA  +CE+V   D+GSMA+  +LR F
Sbjct:    6 SVERAVADIGAGKAVIVIDDEDRENEGDLIFAAEKATPELVAFMVRYTSGYLCVPLDGAVCDRLGLLPMYAV--NQDKHGTAYTVTVDAKNGVGTGISASDRATTMRLLADPASVAEDFTRPGHVVPLRAKDGGVLRRPGHTEAAVDLARMAGLQPAGAICEIVSQKDEGSMAQTDELRVF 184          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_PHOPO (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Photobacterium phosphoreum GN=ribB PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.029e-37
Identity = 79/180 (43.89%), Postives = 113/180 (62.78%), Query Frame = 1
Query:  154 SSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            S+  E IEDI QGK               LI+A+   TPEA+ F+  +G G++C+++  E   +L+LP+MV  K N +K  T FT++++A  G TTG+S  DRA TV    +  +   D   PGHIFPL  ++GGVL RAGHTEA  D+A LAG +P++V+ E+++DDG+MAR P+L  F
Sbjct:    4 STAQEIIEDIHQGKMVILMDDEDRENEGDLIIASDKVTPEAINFMATYGRGLICLTLNKERCLQLELPMMV--KSNTDKFATPFTISIEAASGVTTGISVNDRARTVQAAIAATATAKDIVMPGHIFPLMAQDGGVLARAGHTEAGCDVARLAGLEPSSVIVEILNDDGTMARRPQLEVF 181          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_DESRM (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Desulfotomaculum reducens (strain MI-1) GN=ribB PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.029e-37
Identity = 81/181 (44.75%), Postives = 108/181 (59.67%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            F  +  A+  +R G                LI  AQ      MA +++  +GIVC+ +  E +  L LP+MV  + N  +  TAFTVT++A HG TTGVSA DR  TV T  + ++KP D NRPGH+FPL+   GGVL+R GHTEA+VDL  LAG  P  VLCE+ + DG+MARLP++  F
Sbjct:   13 FERVERALRSLRNGNGVLVTDDENRENEGDLIFPAQTLNEVQMAMLIRECSGIVCLCLTDEKVRSLGLPMMV--ENNSSRFKTAFTVTIEAAHGVTTGVSAADRVKTVKTAVAENAKPEDLNRPGHVFPLRACPGGVLERQGHTEATVDLMKLAGLQPYGVLCELTNIDGTMARLPEVVTF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_BUCAT (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=ribB PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.029e-37
Identity = 73/151 (48.34%), Postives = 107/151 (70.86%), Query Frame = 1
Query:  241 LIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            L+ A +  T E MA  +++G+GIVC+ +     ++L+LP+MV  K+N     T FTVT++A  G +TGVSA+DR TT+ T  + D+KP D NRPGH+FPL+  +GGVL R GHTEA++++  LAGF PA V+CE+ + DG+MAR P++ +F
Sbjct:   43 LVFACENMTVEQMALSIRYGSGIVCLCITESKRKQLNLPMMV--KKNTSAYRTGFTVTIEASKGISTGVSAKDRLTTIKTAIADDAKPSDLNRPGHVFPLRAHKGGVLSRPGHTEAAIEIVSLAGFKPAGVICELTNKDGTMARTPEIIKF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_BUCAI (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ribB PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.029e-37
Identity = 73/151 (48.34%), Postives = 107/151 (70.86%), Query Frame = 1
Query:  241 LIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            L+ A +  T E MA  +++G+GIVC+ +     ++L+LP+MV  K+N     T FTVT++A  G +TGVSA+DR TT+ T  + D+KP D NRPGH+FPL+  +GGVL R GHTEA++++  LAGF PA V+CE+ + DG+MAR P++ +F
Sbjct:   43 LVFACENMTVEQMALSIRYGSGIVCLCITESKRKQLNLPMMV--KKNTSAYRTGFTVTIEASKGISTGVSAKDRLTTIKTAIADDAKPSDLNRPGHVFPLRAHKGGVLSRPGHTEAAIEIVSLAGFKPAGVICELTNKDGTMARTPEIIKF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_BUCA5 (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=ribB PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.029e-37
Identity = 73/151 (48.34%), Postives = 107/151 (70.86%), Query Frame = 1
Query:  241 LIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            L+ A +  T E MA  +++G+GIVC+ +     ++L+LP+MV  K+N     T FTVT++A  G +TGVSA+DR TT+ T  + D+KP D NRPGH+FPL+  +GGVL R GHTEA++++  LAGF PA V+CE+ + DG+MAR P++ +F
Sbjct:   43 LVFACENMTVEQMALSIRYGSGIVCLCITESKRKQLNLPMMV--KKNTSAYRTGFTVTIEASKGISTGVSAKDRLTTIKTAIADDAKPSDLNRPGHVFPLRAHKGGVLSRPGHTEAAIEIVSLAGFKPAGVICELTNKDGTMARTPEIIKF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCGI (Riboflavin biosynthesis protein ribBA OS=Mycobacterium gilvum (strain PYR-GCK) GN=ribBA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.029e-37
Identity = 87/181 (48.07%), Postives = 115/181 (63.54%), Query Frame = 1
Query:  157 SIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVD--DDGSMARLPKLREF 693
            S+  A+ DI  GK               LI AA+ ATPE +AF+V++ +G +CV + GE  +RL L  M A   N +K  TA+TVTVDAK G  TG+SA DRATT+  LA  DS   DF +PGH+ PL+ ++GGVL+R GHTEA+VDLA LAG   A  +CE+V   D+G+MA+  +LR F
Sbjct:    6 SVERAVADIAAGKAVVVIDDEDRENEGDLIFAAEKATPELVAFMVRYTSGYLCVPLAGEICDRLGLLPMYAV--NQDKHGTAYTVTVDAKVGVGTGISASDRATTMRLLADPDSVADDFTKPGHVVPLRAKDGGVLRRPGHTEAAVDLARLAGLQAAGTICEIVSQKDEGAMAQTDELRIF 184          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_GEOSW (Riboflavin biosynthesis protein ribBA OS=Geobacillus sp. (strain WCH70) GN=ribBA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.029e-37
Identity = 82/180 (45.56%), Postives = 115/180 (63.89%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLRE 690
            F  I EAI ++ QGK                +  A+ ATPE + F++K+G G+VCV +  E  ++LDL  MV    N +   TAFTV++D K  TTTG+SA +R+ T+  L   ++K  DF RPGH+FPL  ++GGVL+RAGHTEA+VDLA L G  PA V+CE++ +DG+MAR+  LR+
Sbjct:    2 FDMIEEAIYELMQGKVIIVCDDEDRENEGDFVALAEKATPEVINFMIKYGRGLVCVPITEELADKLDLAPMV--NHNTDSHGTAFTVSIDYK-STTTGISAYERSMTIQALLDPNAKASDFKRPGHVFPLVAKKGGVLRRAGHTEAAVDLARLCGAKPAGVICEIIKEDGTMARVSDLRK 178          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_CORAM (Riboflavin biosynthesis protein ribBA OS=Corynebacterium ammoniagenes GN=ribBA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.029e-37
Identity = 91/181 (50.28%), Postives = 116/181 (64.09%), Query Frame = 1
Query:  157 SIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVV--DDDGSMARLPKLREF 693
            SI EAI DI  GK               LI AA+LATPE +AF+V++ +G +CV +  ED +RL+LP M+ +  N++   TA+TVTVDA  GTT G+SA  RA T+L LA   S   DF RPGH+ PL  R  GVL+R GHTEA++DLA LAG  PA VLCE+V  +D  +MAR  +LR F
Sbjct:   13 SIEEAIADIAAGKAVVVVDNEDRENEGDLIFAAELATPELVAFMVRYSSGYICVPLLPEDCKRLNLPPMMGR--NEDVRGTAYTVTVDANTGTT-GISATSRAETMLRLADPMSVVDDFTRPGHVVPLAARPNGVLERDGHTEAAIDLARLAGLRPAGVLCEIVSEEDPTTMARSEELRRF 190          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCTU (Riboflavin biosynthesis protein ribBA OS=Mycobacterium tuberculosis GN=ribBA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.956e-37
Identity = 86/181 (47.51%), Postives = 114/181 (62.98%), Query Frame = 1
Query:  157 SIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVD--DDGSMARLPKLREF 693
            S+  A+ DI  GK               LI AA+ ATPE +AF+V++ +G +CV + G   +RL L  M A   N +K  TA+TVTVDA++G  TG+SA DRATT+  LA   S   DF RPGH+ PL+ ++GGVL+R GHTEA+VDLA +AG  PA  +CE+V   D+GSMA   +LR F
Sbjct:    6 SVERAVADIAAGKAVIVIDDEDRENEGDLIFAAEKATPEMVAFMVRYTSGYLCVPLDGAICDRLGLLPMYAV--NQDKHGTAYTVTVDARNGIGTGISASDRATTMRLLADPTSVADDFTRPGHVVPLRAKDGGVLRRPGHTEAAVDLARMAGLQPAGAICEIVSQKDEGSMAHTDELRVF 184          
The following BLAST results are available for this feature:
BLAST of CX295133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
RIBBA_MYCMM2.319e-3748.07Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBB_PHOPO3.029e-3743.893,4-dihydroxy-2-butanone 4-phosphate synthase OS=P... [more]
RIBB_DESRM3.029e-3744.753,4-dihydroxy-2-butanone 4-phosphate synthase OS=D... [more]
RIBB_BUCAT3.029e-3748.343,4-dihydroxy-2-butanone 4-phosphate synthase OS=B... [more]
RIBB_BUCAI3.029e-3748.343,4-dihydroxy-2-butanone 4-phosphate synthase OS=B... [more]
RIBB_BUCA53.029e-3748.343,4-dihydroxy-2-butanone 4-phosphate synthase OS=B... [more]
RIBBA_MYCGI3.029e-3748.07Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_GEOSW3.029e-3745.56Riboflavin biosynthesis protein ribBA OS=Geobacill... [more]
RIBBA_CORAM3.029e-3750.28Riboflavin biosynthesis protein ribBA OS=Corynebac... [more]
RIBBA_MYCTU3.956e-3747.51Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]

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Properties
Property NameValue
Genbank descriptionC05068H10SK DroRLeaf1 Citrus clementina cDNA clone C05068H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295133 ID=CX295133; Name=CX295133; organism=Citrus clementina; type=EST; length=695bp
GAAAGTACTGGTGCTCATGATCAATTGGAGGGGATTGAGTTACAACCGGA
TGCAATAGCATTTGGAGCACTTGCACCAGATACCGCTCCCACAACTTTTG
GATTTTCCAGTGATGATAGTGAATTTGATTTGGATAGCCCTACAGAAGGT
TTTTCTTCTATCCCCGAGGCCATTGAAGACATTCGCCAAGGAAAGTTTGT
CGTGGTCGTGGATGATGAAGATAGAGAAAATGAGGGAGATCTTATAATGG
CAGCACAGCTCGCAACACCTGAAGCTATGGCATTTATTGTAAAACATGGA
ACTGGAATTGTTTGCGTGAGCATGAAGGGGGAAGATCTGGAGAGGCTGGA
TCTTCCTTTAATGGTTGCACAAAAGGAAAATGATGAGAAACTTTGTACTG
CATTCACAGTGACAGTGGATGCAAAACATGGAACAACCACAGGGGTCTCA
GCTCGTGATAGGGCAACAACTGTTTTGACTCTTGCTTCTAGGGATTCAAA
ACCTGGGGATTTCAATCGCCCGGGCCATATTTTTCCTCTGAAGTACAGAG
AGGGTGGAGTTCTGAAAAGAGCTGGTCATACAGAAGCTTCTGTTGATCTT
GCTGTGCTAGCTGGATTTGACCCTGCAGCAGTTTTGTGTGAGGTTGTGGA
TGATGATGGTTCCATGGCTAGATTACCAAAGCTTCGTGAATTTTG
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